EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000015332 (Gene tree)
Gene ID: 291797
Gene Symbol: Thoc1
Alias: LOC291797|LRRGT00070
Full Name: THO complex 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 34193 bases
Position: chr18:1142782-1176974
Accession: 1308657
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000042658	efThoc1	PF11957.8	4.6e-63	1	3
ENSRNOP00000042658	efThoc1	PF11957.8	4.6e-63	2	3
ENSRNOP00000042658	efThoc1	PF11957.8	4.6e-63	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000046718	-	1500	-	ENSRNOP00000042658	499 (aa)	-	Q6TUH4

Gene Model

Click here to download ENSRNOG00000015332's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000015332's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000015332	Thoc1	56	74.394	ENSRNOG00000032739	Da2-19	83	74.394

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000015332	Thoc1	100	85.882	ENSG00000079134	THOC1	99	97.872	Homo_sapiens
ENSRNOG00000015332	Thoc1	100	85.938	ENSAMEG00000006645	THOC1	91	85.938	Ailuropoda_melanoleuca
ENSRNOG00000015332	Thoc1	96	58.076	ENSACIG00000019392	thoc1	85	58.076	Amphilophus_citrinellus
ENSRNOG00000015332	Thoc1	95	53.191	ENSAOCG00000008391	thoc1	90	53.191	Amphiprion_ocellaris
ENSRNOG00000015332	Thoc1	94	60.072	ENSAPEG00000001093	thoc1	81	60.072	Amphiprion_percula
ENSRNOG00000015332	Thoc1	95	53.597	ENSATEG00000004783	thoc1	90	53.405	Anabas_testudineus
ENSRNOG00000015332	Thoc1	96	75.581	ENSAPLG00000016149	THOC1	81	75.581	Anas_platyrhynchos
ENSRNOG00000015332	Thoc1	99	75.486	ENSACAG00000008307	THOC1	89	71.595	Anolis_carolinensis
ENSRNOG00000015332	Thoc1	100	83.459	ENSANAG00000033200	THOC1	92	83.459	Aotus_nancymaae
ENSRNOG00000015332	Thoc1	94	60.650	ENSACLG00000016836	thoc1	80	60.650	Astatotilapia_calliptera
ENSRNOG00000015332	Thoc1	91	50.346	ENSAMXG00000014708	thoc1	93	50.346	Astyanax_mexicanus
ENSRNOG00000015332	Thoc1	100	85.938	ENSBTAG00000019215	THOC1	91	85.938	Bos_taurus
ENSRNOG00000015332	Thoc1	61	32.292	WBGene00020172	thoc-1	52	34.483	Caenorhabditis_elegans
ENSRNOG00000015332	Thoc1	100	85.938	ENSCJAG00000020450	THOC1	91	85.938	Callithrix_jacchus
ENSRNOG00000015332	Thoc1	100	89.379	ENSCAFG00000018324	THOC1	100	89.379	Canis_familiaris
ENSRNOG00000015332	Thoc1	100	85.938	ENSCAFG00020017894	THOC1	91	85.938	Canis_lupus_dingo
ENSRNOG00000015332	Thoc1	100	85.938	ENSCHIG00000015399	THOC1	91	85.938	Capra_hircus
ENSRNOG00000015332	Thoc1	100	85.938	ENSTSYG00000010585	THOC1	91	85.938	Carlito_syrichta
ENSRNOG00000015332	Thoc1	96	66.854	ENSCAPG00000016270	THOC1	90	66.854	Cavia_aperea
ENSRNOG00000015332	Thoc1	100	84.766	ENSCPOG00000000959	THOC1	91	84.766	Cavia_porcellus
ENSRNOG00000015332	Thoc1	100	85.938	ENSCCAG00000025766	THOC1	91	85.938	Cebus_capucinus
ENSRNOG00000015332	Thoc1	100	85.938	ENSCATG00000028180	THOC1	92	85.938	Cercocebus_atys
ENSRNOG00000015332	Thoc1	96	84.766	ENSCLAG00000009117	THOC1	84	84.766	Chinchilla_lanigera
ENSRNOG00000015332	Thoc1	100	85.938	ENSCSAG00000017631	THOC1	91	85.938	Chlorocebus_sabaeus
ENSRNOG00000015332	Thoc1	93	74.615	ENSCHOG00000010609	THOC1	85	74.615	Choloepus_hoffmanni
ENSRNOG00000015332	Thoc1	99	83.268	ENSCPBG00000027558	THOC1	91	83.268	Chrysemys_picta_bellii
ENSRNOG00000015332	Thoc1	91	40.084	ENSCSAVG00000010649	-	81	37.553	Ciona_savignyi
ENSRNOG00000015332	Thoc1	100	85.547	ENSCANG00000034265	THOC1	92	85.547	Colobus_angolensis_palliatus
ENSRNOG00000015332	Thoc1	100	89.062	ENSCGRG00001016464	Thoc1	91	89.062	Cricetulus_griseus_chok1gshd
ENSRNOG00000015332	Thoc1	96	63.009	ENSCGRG00000003390	-	99	63.009	Cricetulus_griseus_crigri
ENSRNOG00000015332	Thoc1	96	89.062	ENSCGRG00000010269	-	84	89.062	Cricetulus_griseus_crigri
ENSRNOG00000015332	Thoc1	96	57.447	ENSCSEG00000012486	thoc1	85	57.588	Cynoglossus_semilaevis
ENSRNOG00000015332	Thoc1	94	58.730	ENSCVAG00000020600	thoc1	81	58.730	Cyprinodon_variegatus
ENSRNOG00000015332	Thoc1	94	52.721	ENSDARG00000088246	thoc1	89	52.811	Danio_rerio
ENSRNOG00000015332	Thoc1	100	84.766	ENSDNOG00000019217	THOC1	91	84.766	Dasypus_novemcinctus
ENSRNOG00000015332	Thoc1	96	86.328	ENSDORG00000008060	Thoc1	83	86.328	Dipodomys_ordii
ENSRNOG00000015332	Thoc1	93	34.036	FBgn0037382	Hpr1	56	34.347	Drosophila_melanogaster
ENSRNOG00000015332	Thoc1	81	68.528	ENSETEG00000004165	THOC1	84	69.231	Echinops_telfairi
ENSRNOG00000015332	Thoc1	96	53.957	ENSEBUG00000005998	thoc1	86	53.571	Eptatretus_burgeri
ENSRNOG00000015332	Thoc1	100	87.109	ENSEASG00005002549	THOC1	87	87.109	Equus_asinus_asinus
ENSRNOG00000015332	Thoc1	100	87.109	ENSECAG00000009267	THOC1	81	87.109	Equus_caballus
ENSRNOG00000015332	Thoc1	89	81.379	ENSELUG00000023277	thoc1	67	81.379	Esox_lucius
ENSRNOG00000015332	Thoc1	100	85.938	ENSFCAG00000022454	THOC1	79	85.938	Felis_catus
ENSRNOG00000015332	Thoc1	96	78.846	ENSFALG00000006205	THOC1	84	78.846	Ficedula_albicollis
ENSRNOG00000015332	Thoc1	96	85.156	ENSFDAG00000006842	THOC1	83	85.156	Fukomys_damarensis
ENSRNOG00000015332	Thoc1	94	58.730	ENSFHEG00000008841	thoc1	92	52.660	Fundulus_heteroclitus
ENSRNOG00000015332	Thoc1	94	59.498	ENSGMOG00000011486	thoc1	80	59.498	Gadus_morhua
ENSRNOG00000015332	Thoc1	99	78.656	ENSGALG00000014915	THOC1	89	78.656	Gallus_gallus
ENSRNOG00000015332	Thoc1	94	58.065	ENSGAFG00000021464	thoc1	91	52.158	Gambusia_affinis
ENSRNOG00000015332	Thoc1	95	51.429	ENSGACG00000017361	thoc1	90	51.429	Gasterosteus_aculeatus
ENSRNOG00000015332	Thoc1	99	82.879	ENSGAGG00000021230	-	89	82.879	Gopherus_agassizii
ENSRNOG00000015332	Thoc1	100	85.547	ENSGGOG00000003013	THOC1	91	85.547	Gorilla_gorilla
ENSRNOG00000015332	Thoc1	94	60.650	ENSHBUG00000009096	thoc1	80	60.650	Haplochromis_burtoni
ENSRNOG00000015332	Thoc1	100	85.156	ENSHGLG00000003712	-	91	85.156	Heterocephalus_glaber_female
ENSRNOG00000015332	Thoc1	96	74.385	ENSHGLG00000009264	-	98	74.385	Heterocephalus_glaber_female
ENSRNOG00000015332	Thoc1	100	85.547	ENSHGLG00100003570	THOC1	91	85.547	Heterocephalus_glaber_male
ENSRNOG00000015332	Thoc1	96	73.597	ENSHGLG00100002225	-	98	73.597	Heterocephalus_glaber_male
ENSRNOG00000015332	Thoc1	77	55.752	ENSIPUG00000005306	thoc1	79	55.531	Ictalurus_punctatus
ENSRNOG00000015332	Thoc1	100	86.328	ENSSTOG00000006484	THOC1	91	86.328	Ictidomys_tridecemlineatus
ENSRNOG00000015332	Thoc1	94	58.993	ENSKMAG00000003904	thoc1	88	53.913	Kryptolebias_marmoratus
ENSRNOG00000015332	Thoc1	94	52.034	ENSLBEG00000020372	thoc1	88	52.034	Labrus_bergylta
ENSRNOG00000015332	Thoc1	96	68.482	ENSLACG00000014869	THOC1	82	66.016	Latimeria_chalumnae
ENSRNOG00000015332	Thoc1	94	64.400	ENSLOCG00000002097	thoc1	80	62.651	Lepisosteus_oculatus
ENSRNOG00000015332	Thoc1	100	83.984	ENSLAFG00000009585	THOC1	91	83.984	Loxodonta_africana
ENSRNOG00000015332	Thoc1	100	85.938	ENSMFAG00000041520	THOC1	91	85.938	Macaca_fascicularis
ENSRNOG00000015332	Thoc1	100	85.938	ENSMMUG00000004662	THOC1	91	85.938	Macaca_mulatta
ENSRNOG00000015332	Thoc1	100	85.938	ENSMNEG00000040177	THOC1	91	85.938	Macaca_nemestrina
ENSRNOG00000015332	Thoc1	100	85.938	ENSMLEG00000034201	THOC1	91	85.938	Mandrillus_leucophaeus
ENSRNOG00000015332	Thoc1	95	60.215	ENSMAMG00000016747	thoc1	84	60.215	Mastacembelus_armatus
ENSRNOG00000015332	Thoc1	94	60.650	ENSMZEG00005024609	thoc1	80	60.650	Maylandia_zebra
ENSRNOG00000015332	Thoc1	96	77.821	ENSMGAG00000009811	THOC1	84	77.821	Meleagris_gallopavo
ENSRNOG00000015332	Thoc1	100	89.062	ENSMAUG00000010272	Thoc1	91	89.062	Mesocricetus_auratus
ENSRNOG00000015332	Thoc1	100	85.938	ENSMICG00000027200	THOC1	91	85.938	Microcebus_murinus
ENSRNOG00000015332	Thoc1	99	65.837	ENSMOCG00000014924	-	96	65.837	Microtus_ochrogaster
ENSRNOG00000015332	Thoc1	99	85.490	ENSMOCG00000014536	-	78	85.490	Microtus_ochrogaster
ENSRNOG00000015332	Thoc1	94	51.624	ENSMMOG00000011772	thoc1	96	51.624	Mola_mola
ENSRNOG00000015332	Thoc1	100	84.047	ENSMODG00000021482	THOC1	91	84.047	Monodelphis_domestica
ENSRNOG00000015332	Thoc1	94	60.573	ENSMALG00000021872	thoc1	93	54.049	Monopterus_albus
ENSRNOG00000015332	Thoc1	100	90.625	MGP_CAROLIEiJ_G0021989	Thoc1	91	90.625	Mus_caroli
ENSRNOG00000015332	Thoc1	100	91.016	ENSMUSG00000024287	Thoc1	100	99.481	Mus_musculus
ENSRNOG00000015332	Thoc1	100	91.016	MGP_PahariEiJ_G0018726	Thoc1	91	91.016	Mus_pahari
ENSRNOG00000015332	Thoc1	100	90.625	MGP_SPRETEiJ_G0022905	Thoc1	91	90.625	Mus_spretus
ENSRNOG00000015332	Thoc1	100	85.938	ENSMPUG00000005448	THOC1	91	85.938	Mustela_putorius_furo
ENSRNOG00000015332	Thoc1	83	68.229	ENSMLUG00000027965	-	79	66.784	Myotis_lucifugus
ENSRNOG00000015332	Thoc1	51	56.380	ENSMLUG00000024912	-	86	56.380	Myotis_lucifugus
ENSRNOG00000015332	Thoc1	100	85.938	ENSMLUG00000004090	-	91	85.938	Myotis_lucifugus
ENSRNOG00000015332	Thoc1	96	69.170	ENSNGAG00000008061	-	81	69.170	Nannospalax_galili
ENSRNOG00000015332	Thoc1	100	86.719	ENSNGAG00000001401	-	91	86.719	Nannospalax_galili
ENSRNOG00000015332	Thoc1	95	58.167	ENSNBRG00000005991	thoc1	89	52.120	Neolamprologus_brichardi
ENSRNOG00000015332	Thoc1	100	85.938	ENSNLEG00000006835	THOC1	91	85.938	Nomascus_leucogenys
ENSRNOG00000015332	Thoc1	96	70.463	ENSMEUG00000009756	THOC1	84	70.463	Notamacropus_eugenii
ENSRNOG00000015332	Thoc1	99	73.494	ENSOPRG00000001108	THOC1	91	73.494	Ochotona_princeps
ENSRNOG00000015332	Thoc1	100	85.156	ENSODEG00000006623	THOC1	90	85.156	Octodon_degus
ENSRNOG00000015332	Thoc1	95	61.011	ENSONIG00000009440	thoc1	81	61.011	Oreochromis_niloticus
ENSRNOG00000015332	Thoc1	100	85.938	ENSOCUG00000011601	THOC1	91	85.938	Oryctolagus_cuniculus
ENSRNOG00000015332	Thoc1	96	47.899	ENSORLG00000017629	thoc1	90	50.508	Oryzias_latipes
ENSRNOG00000015332	Thoc1	95	50.441	ENSORLG00020007567	thoc1	90	50.508	Oryzias_latipes_hni
ENSRNOG00000015332	Thoc1	95	49.155	ENSORLG00015007356	thoc1	99	48.101	Oryzias_latipes_hsok
ENSRNOG00000015332	Thoc1	98	59.838	ENSOMEG00000008200	thoc1	99	60.852	Oryzias_melastigma
ENSRNOG00000015332	Thoc1	100	77.647	ENSOGAG00000000470	THOC1	91	77.647	Otolemur_garnettii
ENSRNOG00000015332	Thoc1	96	85.938	ENSOARG00000009238	THOC1	81	85.938	Ovis_aries
ENSRNOG00000015332	Thoc1	100	85.547	ENSPPAG00000031812	THOC1	91	85.547	Pan_paniscus
ENSRNOG00000015332	Thoc1	100	85.115	ENSPPRG00000023794	THOC1	92	85.115	Panthera_pardus
ENSRNOG00000015332	Thoc1	100	85.115	ENSPTIG00000007469	THOC1	92	85.115	Panthera_tigris_altaica
ENSRNOG00000015332	Thoc1	100	83.835	ENSPTRG00000009816	THOC1	92	83.835	Pan_troglodytes
ENSRNOG00000015332	Thoc1	100	86.275	ENSPANG00000008665	THOC1	90	86.275	Papio_anubis
ENSRNOG00000015332	Thoc1	95	58.268	ENSPKIG00000005906	thoc1	81	60.357	Paramormyrops_kingsleyae
ENSRNOG00000015332	Thoc1	78	91.034	ENSPSIG00000007691	THOC1	74	91.034	Pelodiscus_sinensis
ENSRNOG00000015332	Thoc1	93	51.630	ENSPMGG00000008279	thoc1	92	51.630	Periophthalmus_magnuspinnatus
ENSRNOG00000015332	Thoc1	100	89.844	ENSPEMG00000021789	Thoc1	91	89.844	Peromyscus_maniculatus_bairdii
ENSRNOG00000015332	Thoc1	79	91.216	ENSPCIG00000026942	THOC1	97	76.347	Phascolarctos_cinereus
ENSRNOG00000015332	Thoc1	95	57.874	ENSPFOG00000011673	thoc1	81	58.167	Poecilia_formosa
ENSRNOG00000015332	Thoc1	94	58.633	ENSPLAG00000019648	thoc1	81	58.633	Poecilia_latipinna
ENSRNOG00000015332	Thoc1	94	58.167	ENSPMEG00000007083	thoc1	81	58.167	Poecilia_mexicana
ENSRNOG00000015332	Thoc1	94	58.065	ENSPREG00000006719	thoc1	81	58.065	Poecilia_reticulata
ENSRNOG00000015332	Thoc1	66	67.442	ENSPPYG00000009049	-	87	67.442	Pongo_abelii
ENSRNOG00000015332	Thoc1	100	63.081	ENSPCAG00000005320	THOC1	92	63.081	Procavia_capensis
ENSRNOG00000015332	Thoc1	100	85.938	ENSPCOG00000009234	THOC1	91	85.938	Propithecus_coquereli
ENSRNOG00000015332	Thoc1	100	67.752	ENSPVAG00000004007	THOC1	100	67.752	Pteropus_vampyrus
ENSRNOG00000015332	Thoc1	94	60.650	ENSPNYG00000019152	thoc1	80	60.650	Pundamilia_nyererei
ENSRNOG00000015332	Thoc1	95	60.956	ENSPNAG00000023390	thoc1	81	60.956	Pygocentrus_nattereri
ENSRNOG00000015332	Thoc1	100	85.938	ENSRBIG00000033738	THOC1	92	85.938	Rhinopithecus_bieti
ENSRNOG00000015332	Thoc1	100	85.938	ENSRROG00000044988	THOC1	92	85.938	Rhinopithecus_roxellana
ENSRNOG00000015332	Thoc1	100	85.938	ENSSBOG00000016556	THOC1	91	85.938	Saimiri_boliviensis_boliviensis
ENSRNOG00000015332	Thoc1	100	83.984	ENSSHAG00000014829	THOC1	91	83.984	Sarcophilus_harrisii
ENSRNOG00000015332	Thoc1	94	59.921	ENSSFOG00015021527	thoc1	81	61.151	Scleropages_formosus
ENSRNOG00000015332	Thoc1	94	51.273	ENSSMAG00000018465	thoc1	91	51.186	Scophthalmus_maximus
ENSRNOG00000015332	Thoc1	95	60.777	ENSSDUG00000016810	thoc1	81	60.777	Seriola_dumerili
ENSRNOG00000015332	Thoc1	95	60.424	ENSSLDG00000015555	thoc1	81	60.424	Seriola_lalandi_dorsalis
ENSRNOG00000015332	Thoc1	85	85.098	ENSSARG00000006910	THOC1	79	85.098	Sorex_araneus
ENSRNOG00000015332	Thoc1	94	80.784	ENSSPUG00000007238	THOC1	91	80.784	Sphenodon_punctatus
ENSRNOG00000015332	Thoc1	94	60.072	ENSSPAG00000018847	thoc1	80	60.072	Stegastes_partitus
ENSRNOG00000015332	Thoc1	100	86.719	ENSSSCG00000025653	THOC1	86	86.719	Sus_scrofa
ENSRNOG00000015332	Thoc1	99	78.988	ENSTGUG00000010204	THOC1	91	78.988	Taeniopygia_guttata
ENSRNOG00000015332	Thoc1	98	56.746	ENSTRUG00000013518	thoc1	90	56.746	Takifugu_rubripes
ENSRNOG00000015332	Thoc1	94	60.215	ENSTNIG00000008473	thoc1	80	60.215	Tetraodon_nigroviridis
ENSRNOG00000015332	Thoc1	100	81.496	ENSTBEG00000016920	THOC1	91	81.496	Tupaia_belangeri
ENSRNOG00000015332	Thoc1	79	93.919	ENSTTRG00000016664	THOC1	63	93.919	Tursiops_truncatus
ENSRNOG00000015332	Thoc1	100	85.547	ENSUAMG00000002527	THOC1	91	85.547	Ursus_americanus
ENSRNOG00000015332	Thoc1	100	85.547	ENSUMAG00000019693	THOC1	91	85.547	Ursus_maritimus
ENSRNOG00000015332	Thoc1	84	93.500	ENSVPAG00000003726	-	77	93.500	Vicugna_pacos
ENSRNOG00000015332	Thoc1	100	85.938	ENSVVUG00000004384	THOC1	91	85.938	Vulpes_vulpes
ENSRNOG00000015332	Thoc1	96	63.878	ENSXETG00000003155	thoc1	80	63.878	Xenopus_tropicalis
ENSRNOG00000015332	Thoc1	94	52.158	ENSXCOG00000016085	thoc1	85	52.158	Xiphophorus_couchianus
ENSRNOG00000015332	Thoc1	94	58.065	ENSXMAG00000002353	thoc1	90	50.862	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000018	regulation of DNA recombination	-	ISO	Process
GO:0000346	transcription export complex	-	ISO	Component
GO:0000347	THO complex	21873635.	IBA	Component
GO:0000347	THO complex	-	ISO	Component
GO:0000445	THO complex part of transcription export complex	21873635.	IBA	Component
GO:0000445	THO complex part of transcription export complex	-	ISO	Component
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0006915	apoptotic process	-	ISO	Process
GO:0007165	signal transduction	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0031297	replication fork processing	-	ISO	Process
GO:0032784	regulation of DNA-templated transcription, elongation	21873635.	IBA	Process
GO:0032784	regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0045171	intercellular bridge	-	ISO	Component
GO:0046784	viral mRNA export from host cell nucleus	-	ISO	Process
GO:0048297	negative regulation of isotype switching to IgA isotypes	-	ISO	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISO	Process