EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000015375 (Gene tree)
Gene ID: 364624
Gene Symbol: Lsm1
Alias: LOC364624
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 11409 bases
Position: chr16:71046475-71057883
Accession: 1304967
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020721	LSM	PF01423.22	2.2e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020721	-	1216	-	ENSRNOP00000020721	133 (aa)	-	D3ZWB1

Gene Model

Click here to download ENSRNOG00000015375's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000015375's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000015375	Lsm1	65	34.091	ENSRNOG00000058677	Lsm8	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000015375	Lsm1	100	97.744	ENSG00000175324	LSM1	100	97.744	Homo_sapiens
ENSRNOG00000015375	Lsm1	100	83.459	ENSAPOG00000010833	lsm1	100	83.459	Acanthochromis_polyacanthus
ENSRNOG00000015375	Lsm1	100	97.744	ENSAMEG00000011141	LSM1	100	97.744	Ailuropoda_melanoleuca
ENSRNOG00000015375	Lsm1	58	90.909	ENSACIG00000019593	lsm1	64	90.909	Amphilophus_citrinellus
ENSRNOG00000015375	Lsm1	100	83.459	ENSAOCG00000017997	-	100	83.459	Amphiprion_ocellaris
ENSRNOG00000015375	Lsm1	100	83.459	ENSAOCG00000017096	lsm1	100	83.459	Amphiprion_ocellaris
ENSRNOG00000015375	Lsm1	100	83.459	ENSAPEG00000011669	lsm1	100	83.459	Amphiprion_percula
ENSRNOG00000015375	Lsm1	100	82.707	ENSATEG00000022266	lsm1	100	82.707	Anabas_testudineus
ENSRNOG00000015375	Lsm1	100	97.744	ENSANAG00000027785	LSM1	100	97.744	Aotus_nancymaae
ENSRNOG00000015375	Lsm1	100	82.707	ENSACLG00000011400	lsm1	100	82.707	Astatotilapia_calliptera
ENSRNOG00000015375	Lsm1	100	84.962	ENSAMXG00000005441	lsm1	100	84.962	Astyanax_mexicanus
ENSRNOG00000015375	Lsm1	100	96.992	ENSBTAG00000001612	LSM1	100	96.992	Bos_taurus
ENSRNOG00000015375	Lsm1	70	56.989	WBGene00003076	lsm-1	73	56.989	Caenorhabditis_elegans
ENSRNOG00000015375	Lsm1	100	96.992	ENSCJAG00000048015	LSM1	100	96.992	Callithrix_jacchus
ENSRNOG00000015375	Lsm1	100	97.744	ENSCAFG00000006113	LSM1	100	97.744	Canis_familiaris
ENSRNOG00000015375	Lsm1	100	97.744	ENSCAFG00020001822	LSM1	100	97.744	Canis_lupus_dingo
ENSRNOG00000015375	Lsm1	100	97.744	ENSCHIG00000013194	LSM1	100	97.744	Capra_hircus
ENSRNOG00000015375	Lsm1	100	97.744	ENSTSYG00000010394	LSM1	100	97.744	Carlito_syrichta
ENSRNOG00000015375	Lsm1	100	97.744	ENSCPOG00000032671	LSM1	100	97.744	Cavia_porcellus
ENSRNOG00000015375	Lsm1	100	97.744	ENSCCAG00000037171	LSM1	100	97.744	Cebus_capucinus
ENSRNOG00000015375	Lsm1	100	97.744	ENSCATG00000020377	LSM1	100	97.744	Cercocebus_atys
ENSRNOG00000015375	Lsm1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
ENSRNOG00000015375	Lsm1	100	97.744	ENSCSAG00000015485	LSM1	100	97.744	Chlorocebus_sabaeus
ENSRNOG00000015375	Lsm1	100	96.992	ENSCHOG00000006030	LSM1	100	96.992	Choloepus_hoffmanni
ENSRNOG00000015375	Lsm1	95	87.402	ENSCPBG00000006569	LSM1	86	87.402	Chrysemys_picta_bellii
ENSRNOG00000015375	Lsm1	99	66.667	ENSCING00000013536	-	99	66.667	Ciona_intestinalis
ENSRNOG00000015375	Lsm1	100	97.744	ENSCANG00000019173	LSM1	100	97.744	Colobus_angolensis_palliatus
ENSRNOG00000015375	Lsm1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
ENSRNOG00000015375	Lsm1	80	81.982	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSRNOG00000015375	Lsm1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
ENSRNOG00000015375	Lsm1	80	81.982	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSRNOG00000015375	Lsm1	100	81.203	ENSCSEG00000008319	lsm1	92	81.203	Cynoglossus_semilaevis
ENSRNOG00000015375	Lsm1	100	81.955	ENSCSEG00000010570	lsm1	92	81.955	Cynoglossus_semilaevis
ENSRNOG00000015375	Lsm1	100	81.955	ENSCVAG00000003871	lsm1	100	81.955	Cyprinodon_variegatus
ENSRNOG00000015375	Lsm1	100	84.211	ENSDARG00000043177	lsm1	100	84.211	Danio_rerio
ENSRNOG00000015375	Lsm1	100	91.729	ENSDNOG00000030989	-	100	91.729	Dasypus_novemcinctus
ENSRNOG00000015375	Lsm1	100	97.744	ENSDNOG00000046387	-	100	97.744	Dasypus_novemcinctus
ENSRNOG00000015375	Lsm1	100	96.992	ENSDNOG00000032911	-	100	96.992	Dasypus_novemcinctus
ENSRNOG00000015375	Lsm1	89	77.311	ENSDNOG00000046620	-	100	77.311	Dasypus_novemcinctus
ENSRNOG00000015375	Lsm1	100	97.744	ENSDORG00000028172	Lsm1	100	97.744	Dipodomys_ordii
ENSRNOG00000015375	Lsm1	93	64.516	FBgn0261067	LSm1	91	64.516	Drosophila_melanogaster
ENSRNOG00000015375	Lsm1	100	97.744	ENSEASG00005016677	LSM1	100	97.744	Equus_asinus_asinus
ENSRNOG00000015375	Lsm1	100	97.744	ENSECAG00000010461	LSM1	100	97.744	Equus_caballus
ENSRNOG00000015375	Lsm1	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSRNOG00000015375	Lsm1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSRNOG00000015375	Lsm1	100	84.962	ENSELUG00000002322	lsm1	100	84.962	Esox_lucius
ENSRNOG00000015375	Lsm1	100	97.744	ENSFCAG00000039335	LSM1	100	97.744	Felis_catus
ENSRNOG00000015375	Lsm1	89	93.220	ENSFALG00000006723	LSM1	100	93.220	Ficedula_albicollis
ENSRNOG00000015375	Lsm1	100	97.744	ENSFDAG00000007658	LSM1	100	97.744	Fukomys_damarensis
ENSRNOG00000015375	Lsm1	100	81.955	ENSFHEG00000009556	lsm1	100	81.955	Fundulus_heteroclitus
ENSRNOG00000015375	Lsm1	100	81.955	ENSGMOG00000016651	lsm1	98	81.955	Gadus_morhua
ENSRNOG00000015375	Lsm1	100	91.729	ENSGALG00000003245	LSM1	100	91.729	Gallus_gallus
ENSRNOG00000015375	Lsm1	100	81.955	ENSGAFG00000011355	lsm1	100	81.955	Gambusia_affinis
ENSRNOG00000015375	Lsm1	100	82.707	ENSGACG00000011763	lsm1	98	82.707	Gasterosteus_aculeatus
ENSRNOG00000015375	Lsm1	100	93.985	ENSGAGG00000024065	LSM1	100	93.985	Gopherus_agassizii
ENSRNOG00000015375	Lsm1	100	97.744	ENSGGOG00000022658	LSM1	100	97.744	Gorilla_gorilla
ENSRNOG00000015375	Lsm1	100	82.707	ENSHBUG00000010897	lsm1	100	82.707	Haplochromis_burtoni
ENSRNOG00000015375	Lsm1	100	97.744	ENSHGLG00000005711	LSM1	100	97.744	Heterocephalus_glaber_female
ENSRNOG00000015375	Lsm1	100	77.444	ENSHGLG00000017574	-	100	77.444	Heterocephalus_glaber_female
ENSRNOG00000015375	Lsm1	100	97.744	ENSHGLG00100017660	LSM1	100	97.744	Heterocephalus_glaber_male
ENSRNOG00000015375	Lsm1	100	77.444	ENSHGLG00100012152	-	100	77.444	Heterocephalus_glaber_male
ENSRNOG00000015375	Lsm1	100	81.955	ENSHCOG00000017233	lsm1	100	81.955	Hippocampus_comes
ENSRNOG00000015375	Lsm1	100	83.459	ENSIPUG00000002312	LSM1	100	83.459	Ictalurus_punctatus
ENSRNOG00000015375	Lsm1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSRNOG00000015375	Lsm1	100	96.241	ENSJJAG00000014605	-	100	96.241	Jaculus_jaculus
ENSRNOG00000015375	Lsm1	100	82.707	ENSKMAG00000003016	lsm1	100	82.707	Kryptolebias_marmoratus
ENSRNOG00000015375	Lsm1	100	82.707	ENSLBEG00000022352	lsm1	100	82.707	Labrus_bergylta
ENSRNOG00000015375	Lsm1	89	88.983	ENSLACG00000010947	LSM1	98	88.983	Latimeria_chalumnae
ENSRNOG00000015375	Lsm1	100	94.737	ENSLOCG00000015149	lsm1	100	94.737	Lepisosteus_oculatus
ENSRNOG00000015375	Lsm1	100	97.744	ENSLAFG00000003534	LSM1	100	97.744	Loxodonta_africana
ENSRNOG00000015375	Lsm1	100	97.744	ENSMFAG00000032661	LSM1	100	97.744	Macaca_fascicularis
ENSRNOG00000015375	Lsm1	100	97.744	ENSMLEG00000034535	LSM1	100	97.744	Mandrillus_leucophaeus
ENSRNOG00000015375	Lsm1	100	82.707	ENSMAMG00000007464	lsm1	100	82.707	Mastacembelus_armatus
ENSRNOG00000015375	Lsm1	100	82.707	ENSMZEG00005010321	lsm1	100	82.707	Maylandia_zebra
ENSRNOG00000015375	Lsm1	100	91.729	ENSMGAG00000002125	LSM1	100	91.729	Meleagris_gallopavo
ENSRNOG00000015375	Lsm1	100	96.992	ENSMICG00000030726	LSM1	100	96.992	Microcebus_murinus
ENSRNOG00000015375	Lsm1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
ENSRNOG00000015375	Lsm1	100	83.459	ENSMMOG00000015466	lsm1	100	83.459	Mola_mola
ENSRNOG00000015375	Lsm1	100	95.489	ENSMODG00000010732	-	100	95.489	Monodelphis_domestica
ENSRNOG00000015375	Lsm1	58	90.909	ENSMALG00000001478	lsm1	82	90.909	Monopterus_albus
ENSRNOG00000015375	Lsm1	100	96.992	MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	Mus_caroli
ENSRNOG00000015375	Lsm1	100	96.992	ENSMUSG00000037296	Lsm1	100	96.992	Mus_musculus
ENSRNOG00000015375	Lsm1	100	96.992	MGP_PahariEiJ_G0021400	Lsm1	100	96.992	Mus_pahari
ENSRNOG00000015375	Lsm1	100	96.992	MGP_SPRETEiJ_G0032049	Lsm1	100	96.992	Mus_spretus
ENSRNOG00000015375	Lsm1	100	96.992	ENSMPUG00000009883	LSM1	100	96.992	Mustela_putorius_furo
ENSRNOG00000015375	Lsm1	100	96.992	ENSMLUG00000003734	LSM1	100	96.992	Myotis_lucifugus
ENSRNOG00000015375	Lsm1	100	97.744	ENSNGAG00000003753	Lsm1	100	97.744	Nannospalax_galili
ENSRNOG00000015375	Lsm1	58	90.909	ENSNBRG00000017370	lsm1	66	90.909	Neolamprologus_brichardi
ENSRNOG00000015375	Lsm1	100	97.744	ENSNLEG00000029390	LSM1	100	97.744	Nomascus_leucogenys
ENSRNOG00000015375	Lsm1	100	95.489	ENSMEUG00000014077	LSM1	100	95.489	Notamacropus_eugenii
ENSRNOG00000015375	Lsm1	88	94.017	ENSOPRG00000000333	LSM1	100	94.017	Ochotona_princeps
ENSRNOG00000015375	Lsm1	100	97.744	ENSODEG00000004834	LSM1	100	97.744	Octodon_degus
ENSRNOG00000015375	Lsm1	100	82.707	ENSONIG00000010782	lsm1	100	82.707	Oreochromis_niloticus
ENSRNOG00000015375	Lsm1	100	94.737	ENSOANG00000003256	LSM1	100	94.737	Ornithorhynchus_anatinus
ENSRNOG00000015375	Lsm1	100	97.744	ENSOCUG00000015399	LSM1	100	97.744	Oryctolagus_cuniculus
ENSRNOG00000015375	Lsm1	100	84.211	ENSORLG00000030288	lsm1	100	84.211	Oryzias_latipes
ENSRNOG00000015375	Lsm1	100	84.211	ENSORLG00020003941	lsm1	100	84.211	Oryzias_latipes_hni
ENSRNOG00000015375	Lsm1	100	82.707	ENSORLG00020006213	-	86	82.707	Oryzias_latipes_hni
ENSRNOG00000015375	Lsm1	100	84.211	ENSORLG00015018350	lsm1	100	84.211	Oryzias_latipes_hsok
ENSRNOG00000015375	Lsm1	100	82.707	ENSOMEG00000012454	lsm1	100	82.707	Oryzias_melastigma
ENSRNOG00000015375	Lsm1	100	97.744	ENSOGAG00000015161	LSM1	100	97.744	Otolemur_garnettii
ENSRNOG00000015375	Lsm1	100	97.744	ENSOARG00000001317	LSM1	100	97.744	Ovis_aries
ENSRNOG00000015375	Lsm1	100	97.744	ENSPPAG00000032279	LSM1	100	97.744	Pan_paniscus
ENSRNOG00000015375	Lsm1	100	97.744	ENSPPRG00000014172	-	100	97.744	Panthera_pardus
ENSRNOG00000015375	Lsm1	100	97.744	ENSPTIG00000010289	LSM1	100	97.744	Panthera_tigris_altaica
ENSRNOG00000015375	Lsm1	100	97.744	ENSPTRG00000020169	LSM1	100	97.744	Pan_troglodytes
ENSRNOG00000015375	Lsm1	100	97.744	ENSPANG00000008814	LSM1	100	97.744	Papio_anubis
ENSRNOG00000015375	Lsm1	100	81.203	ENSPKIG00000019409	LSM1	99	81.203	Paramormyrops_kingsleyae
ENSRNOG00000015375	Lsm1	100	88.722	ENSPKIG00000001839	lsm1	100	88.722	Paramormyrops_kingsleyae
ENSRNOG00000015375	Lsm1	98	87.692	ENSPSIG00000012563	LSM1	99	87.692	Pelodiscus_sinensis
ENSRNOG00000015375	Lsm1	58	90.909	ENSPMGG00000022999	lsm1	73	90.909	Periophthalmus_magnuspinnatus
ENSRNOG00000015375	Lsm1	85	78.761	ENSPMAG00000002671	lsm1	100	78.761	Petromyzon_marinus
ENSRNOG00000015375	Lsm1	100	93.985	ENSPCIG00000008880	LSM1	100	93.985	Phascolarctos_cinereus
ENSRNOG00000015375	Lsm1	100	81.955	ENSPFOG00000016029	lsm1	100	81.955	Poecilia_formosa
ENSRNOG00000015375	Lsm1	100	81.955	ENSPLAG00000007879	lsm1	100	81.955	Poecilia_latipinna
ENSRNOG00000015375	Lsm1	100	81.955	ENSPMEG00000023550	lsm1	100	81.955	Poecilia_mexicana
ENSRNOG00000015375	Lsm1	100	81.955	ENSPREG00000009574	lsm1	100	81.955	Poecilia_reticulata
ENSRNOG00000015375	Lsm1	100	97.744	ENSPPYG00000018521	LSM1	100	97.744	Pongo_abelii
ENSRNOG00000015375	Lsm1	100	97.744	ENSPCOG00000020901	-	100	97.744	Propithecus_coquereli
ENSRNOG00000015375	Lsm1	100	97.744	ENSPVAG00000006016	LSM1	100	97.744	Pteropus_vampyrus
ENSRNOG00000015375	Lsm1	100	82.707	ENSPNYG00000018067	lsm1	100	82.707	Pundamilia_nyererei
ENSRNOG00000015375	Lsm1	100	84.211	ENSPNAG00000013707	lsm1	100	84.211	Pygocentrus_nattereri
ENSRNOG00000015375	Lsm1	100	97.744	ENSRBIG00000027449	LSM1	100	97.744	Rhinopithecus_bieti
ENSRNOG00000015375	Lsm1	100	97.744	ENSRROG00000036074	LSM1	100	97.744	Rhinopithecus_roxellana
ENSRNOG00000015375	Lsm1	87	42.149	YJL124C	LSM1	70	42.149	Saccharomyces_cerevisiae
ENSRNOG00000015375	Lsm1	100	95.489	ENSSHAG00000017260	LSM1	100	95.489	Sarcophilus_harrisii
ENSRNOG00000015375	Lsm1	100	90.226	ENSSFOG00015019528	lsm1	100	90.226	Scleropages_formosus
ENSRNOG00000015375	Lsm1	100	82.707	ENSSMAG00000004930	lsm1	100	82.707	Scophthalmus_maximus
ENSRNOG00000015375	Lsm1	100	82.707	ENSSDUG00000021823	lsm1	100	82.707	Seriola_dumerili
ENSRNOG00000015375	Lsm1	100	82.707	ENSSLDG00000012154	lsm1	100	82.707	Seriola_lalandi_dorsalis
ENSRNOG00000015375	Lsm1	100	93.985	ENSSPUG00000014878	LSM1	100	93.985	Sphenodon_punctatus
ENSRNOG00000015375	Lsm1	100	82.707	ENSSPAG00000020548	lsm1	100	82.707	Stegastes_partitus
ENSRNOG00000015375	Lsm1	100	98.496	ENSSSCG00000039058	LSM1	100	98.496	Sus_scrofa
ENSRNOG00000015375	Lsm1	100	93.233	ENSTGUG00000004793	LSM1	100	93.233	Taeniopygia_guttata
ENSRNOG00000015375	Lsm1	100	84.962	ENSTRUG00000025239	lsm1	100	84.962	Takifugu_rubripes
ENSRNOG00000015375	Lsm1	100	84.962	ENSTNIG00000004055	lsm1	100	84.962	Tetraodon_nigroviridis
ENSRNOG00000015375	Lsm1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
ENSRNOG00000015375	Lsm1	100	97.744	ENSTTRG00000004482	LSM1	100	97.744	Tursiops_truncatus
ENSRNOG00000015375	Lsm1	100	97.744	ENSUAMG00000004103	LSM1	100	97.744	Ursus_americanus
ENSRNOG00000015375	Lsm1	100	97.744	ENSUMAG00000009132	LSM1	100	97.744	Ursus_maritimus
ENSRNOG00000015375	Lsm1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSRNOG00000015375	Lsm1	100	97.744	ENSVVUG00000020191	LSM1	100	97.744	Vulpes_vulpes
ENSRNOG00000015375	Lsm1	65	68.605	ENSVVUG00000014880	-	91	68.605	Vulpes_vulpes
ENSRNOG00000015375	Lsm1	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSRNOG00000015375	Lsm1	100	81.203	ENSXCOG00000015631	lsm1	100	81.203	Xiphophorus_couchianus
ENSRNOG00000015375	Lsm1	100	81.203	ENSXMAG00000026637	lsm1	100	81.203	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0000339	RNA cap binding	21873635.	IBA	Function
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	-	ISO	Component
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	19188494.	IDA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process
GO:0019827	stem cell population maintenance	-	IEA	Process
GO:0019827	stem cell population maintenance	-	ISO	Process
GO:0030424	axon	19188494.	IDA	Component
GO:0030425	dendrite	19188494.	IDA	Component
GO:0036002	pre-mRNA binding	19188494.	IDA	Function
GO:0043025	neuronal cell body	19188494.	IDA	Component
GO:0045665	negative regulation of neuron differentiation	-	IEA	Process
GO:0045665	negative regulation of neuron differentiation	-	ISO	Process
GO:0071044	histone mRNA catabolic process	-	IEA	Process
GO:0071044	histone mRNA catabolic process	-	ISO	Process
GO:1990124	messenger ribonucleoprotein complex	19188494.	IDA	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component