EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000015411 (Gene tree)
Gene ID: 25383
Gene Symbol: Apobec1
Alias: REPR|apobec-1
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 14770 bases
Position: chr4:155386711-155401480
Accession: 2133
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020735	APOBEC_N	PF08210.11	1.4e-28	1	1
ENSRNOP00000020735	APOBEC_C	PF05240.14	4.6e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020735	-	1272	XM_006237290	ENSRNOP00000020735	229 (aa)	XP_006237352	P38483

Gene Model

Click here to download ENSRNOG00000015411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000015411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000015411	Apobec1	76	33.628	ENSRNOG00000016852	Apobec3	72	33.628
ENSRNOG00000015411	Apobec1	55	34.921	ENSRNOG00000015478	Aicda	60	34.921

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000015411	Apobec1	99	69.737	ENSG00000111701	APOBEC1	97	69.737	Homo_sapiens
ENSRNOG00000015411	Apobec1	99	66.667	ENSAMEG00000007098	APOBEC1	97	66.667	Ailuropoda_melanoleuca
ENSRNOG00000015411	Apobec1	67	44.304	ENSACAG00000028578	-	84	44.304	Anolis_carolinensis
ENSRNOG00000015411	Apobec1	99	68.421	ENSANAG00000027743	APOBEC1	92	68.421	Aotus_nancymaae
ENSRNOG00000015411	Apobec1	99	67.105	ENSBTAG00000014683	APOBEC1	97	67.105	Bos_taurus
ENSRNOG00000015411	Apobec1	93	67.606	ENSCJAG00000005398	APOBEC1	96	67.606	Callithrix_jacchus
ENSRNOG00000015411	Apobec1	99	68.860	ENSCAFG00000013901	APOBEC1	97	68.860	Canis_familiaris
ENSRNOG00000015411	Apobec1	95	68.807	ENSCAFG00020003511	APOBEC1	91	68.807	Canis_lupus_dingo
ENSRNOG00000015411	Apobec1	99	64.912	ENSCHIG00000011898	APOBEC1	95	64.912	Capra_hircus
ENSRNOG00000015411	Apobec1	61	71.429	ENSTSYG00000029141	APOBEC1	99	71.429	Carlito_syrichta
ENSRNOG00000015411	Apobec1	93	60.563	ENSCAPG00000015882	-	99	60.563	Cavia_aperea
ENSRNOG00000015411	Apobec1	99	59.649	ENSCPOG00000033068	APOBEC1	97	59.649	Cavia_porcellus
ENSRNOG00000015411	Apobec1	99	68.421	ENSCCAG00000022258	APOBEC1	97	68.421	Cebus_capucinus
ENSRNOG00000015411	Apobec1	99	68.860	ENSCATG00000021613	APOBEC1	92	68.860	Cercocebus_atys
ENSRNOG00000015411	Apobec1	99	60.965	ENSCLAG00000014645	APOBEC1	99	60.965	Chinchilla_lanigera
ENSRNOG00000015411	Apobec1	78	68.156	ENSCSAG00000009817	APOBEC1	94	68.156	Chlorocebus_sabaeus
ENSRNOG00000015411	Apobec1	88	40.887	ENSCPBG00000014328	-	89	40.887	Chrysemys_picta_bellii
ENSRNOG00000015411	Apobec1	85	45.408	ENSCPBG00000014329	-	54	45.408	Chrysemys_picta_bellii
ENSRNOG00000015411	Apobec1	93	36.449	ENSCPBG00000014327	-	83	36.449	Chrysemys_picta_bellii
ENSRNOG00000015411	Apobec1	76	42.458	ENSCPBG00000017398	-	79	42.458	Chrysemys_picta_bellii
ENSRNOG00000015411	Apobec1	81	47.059	ENSCPBG00000014335	-	76	47.059	Chrysemys_picta_bellii
ENSRNOG00000015411	Apobec1	91	39.524	ENSCPBG00000014331	-	84	39.524	Chrysemys_picta_bellii
ENSRNOG00000015411	Apobec1	97	68.919	ENSCANG00000038359	APOBEC1	97	68.919	Colobus_angolensis_palliatus
ENSRNOG00000015411	Apobec1	99	82.018	ENSCGRG00001011130	Apobec1	99	82.018	Cricetulus_griseus_chok1gshd
ENSRNOG00000015411	Apobec1	99	82.018	ENSCGRG00000008644	Apobec1	99	82.018	Cricetulus_griseus_crigri
ENSRNOG00000015411	Apobec1	99	69.737	ENSDNOG00000010926	APOBEC1	97	69.737	Dasypus_novemcinctus
ENSRNOG00000015411	Apobec1	93	61.682	ENSDORG00000023717	Apobec1	100	61.682	Dipodomys_ordii
ENSRNOG00000015411	Apobec1	99	66.376	ENSETEG00000004867	APOBEC1	97	66.376	Echinops_telfairi
ENSRNOG00000015411	Apobec1	99	70.175	ENSEASG00005015951	APOBEC1	96	70.175	Equus_asinus_asinus
ENSRNOG00000015411	Apobec1	79	69.613	ENSECAG00000017163	APOBEC1	95	69.613	Equus_caballus
ENSRNOG00000015411	Apobec1	90	60.386	ENSEEUG00000009112	-	92	60.386	Erinaceus_europaeus
ENSRNOG00000015411	Apobec1	89	49.510	ENSEEUG00000007530	-	97	49.510	Erinaceus_europaeus
ENSRNOG00000015411	Apobec1	99	69.298	ENSFCAG00000009350	APOBEC1	97	69.298	Felis_catus
ENSRNOG00000015411	Apobec1	62	50.000	ENSFALG00000007257	-	70	50.000	Ficedula_albicollis
ENSRNOG00000015411	Apobec1	87	52.000	ENSFDAG00000018470	APOBEC1	96	52.000	Fukomys_damarensis
ENSRNOG00000015411	Apobec1	79	41.530	ENSGAGG00000006624	-	66	41.530	Gopherus_agassizii
ENSRNOG00000015411	Apobec1	78	41.667	ENSGAGG00000021744	-	71	41.667	Gopherus_agassizii
ENSRNOG00000015411	Apobec1	74	40.805	ENSGAGG00000021745	-	64	40.805	Gopherus_agassizii
ENSRNOG00000015411	Apobec1	94	45.622	ENSGAGG00000011837	-	84	52.174	Gopherus_agassizii
ENSRNOG00000015411	Apobec1	75	45.087	ENSGAGG00000004947	-	86	45.087	Gopherus_agassizii
ENSRNOG00000015411	Apobec1	99	58.772	ENSHGLG00000001495	APOBEC1	97	58.772	Heterocephalus_glaber_female
ENSRNOG00000015411	Apobec1	99	57.895	ENSHGLG00100002187	APOBEC1	97	57.895	Heterocephalus_glaber_male
ENSRNOG00000015411	Apobec1	93	56.808	ENSSTOG00000021971	APOBEC1	99	73.196	Ictidomys_tridecemlineatus
ENSRNOG00000015411	Apobec1	99	71.053	ENSJJAG00000022108	Apobec1	99	71.053	Jaculus_jaculus
ENSRNOG00000015411	Apobec1	94	68.372	ENSLAFG00000030837	APOBEC1	96	68.372	Loxodonta_africana
ENSRNOG00000015411	Apobec1	99	68.860	ENSMFAG00000000277	APOBEC1	97	68.860	Macaca_fascicularis
ENSRNOG00000015411	Apobec1	99	68.860	ENSMNEG00000029670	APOBEC1	97	68.860	Macaca_nemestrina
ENSRNOG00000015411	Apobec1	99	68.860	ENSMLEG00000036301	APOBEC1	97	68.860	Mandrillus_leucophaeus
ENSRNOG00000015411	Apobec1	97	78.733	ENSMAUG00000022167	Apobec1	99	78.733	Mesocricetus_auratus
ENSRNOG00000015411	Apobec1	99	68.421	ENSMICG00000043645	APOBEC1	97	68.421	Microcebus_murinus
ENSRNOG00000015411	Apobec1	99	62.719	ENSMODG00000018004	APOBEC1	97	62.719	Monodelphis_domestica
ENSRNOG00000015411	Apobec1	100	91.703	ENSMUSG00000040613	Apobec1	100	94.215	Mus_musculus
ENSRNOG00000015411	Apobec1	100	89.083	MGP_PahariEiJ_G0022580	-	100	90.083	Mus_pahari
ENSRNOG00000015411	Apobec1	100	91.703	MGP_SPRETEiJ_G0029857	Apobec1	100	94.215	Mus_spretus
ENSRNOG00000015411	Apobec1	99	68.860	ENSMPUG00000017532	APOBEC1	97	68.860	Mustela_putorius_furo
ENSRNOG00000015411	Apobec1	99	72.807	ENSNGAG00000022607	Apobec1	99	72.807	Nannospalax_galili
ENSRNOG00000015411	Apobec1	99	68.860	ENSNLEG00000005342	APOBEC1	97	68.860	Nomascus_leucogenys
ENSRNOG00000015411	Apobec1	99	58.772	ENSMEUG00000013406	APOBEC1	97	58.772	Notamacropus_eugenii
ENSRNOG00000015411	Apobec1	79	56.354	ENSOPRG00000009508	-	100	56.354	Ochotona_princeps
ENSRNOG00000015411	Apobec1	99	65.351	ENSOCUG00000025736	APOBEC1	85	65.351	Oryctolagus_cuniculus
ENSRNOG00000015411	Apobec1	99	68.860	ENSOGAG00000026415	APOBEC1	97	68.860	Otolemur_garnettii
ENSRNOG00000015411	Apobec1	99	64.912	ENSOARG00000002072	APOBEC1	95	64.912	Ovis_aries
ENSRNOG00000015411	Apobec1	99	64.035	ENSPPAG00000027657	APOBEC1	96	64.035	Pan_paniscus
ENSRNOG00000015411	Apobec1	99	69.737	ENSPPRG00000012182	APOBEC1	97	69.737	Panthera_pardus
ENSRNOG00000015411	Apobec1	99	69.737	ENSPTIG00000020280	APOBEC1	97	69.737	Panthera_tigris_altaica
ENSRNOG00000015411	Apobec1	99	69.298	ENSPTRG00000004614	APOBEC1	97	69.298	Pan_troglodytes
ENSRNOG00000015411	Apobec1	99	69.298	ENSPANG00000021027	APOBEC1	97	69.298	Papio_anubis
ENSRNOG00000015411	Apobec1	81	40.860	ENSPSIG00000012568	-	81	40.860	Pelodiscus_sinensis
ENSRNOG00000015411	Apobec1	55	45.833	ENSPSIG00000012791	-	71	45.833	Pelodiscus_sinensis
ENSRNOG00000015411	Apobec1	99	80.702	ENSPEMG00000023841	Apobec1	99	80.702	Peromyscus_maniculatus_bairdii
ENSRNOG00000015411	Apobec1	99	63.596	ENSPCIG00000023973	APOBEC1	97	63.596	Phascolarctos_cinereus
ENSRNOG00000015411	Apobec1	99	68.860	ENSPPYG00000004228	APOBEC1	92	68.860	Pongo_abelii
ENSRNOG00000015411	Apobec1	82	70.588	ENSPCAG00000008733	APOBEC1	100	70.588	Procavia_capensis
ENSRNOG00000015411	Apobec1	93	68.224	ENSPCOG00000013957	APOBEC1	95	68.224	Propithecus_coquereli
ENSRNOG00000015411	Apobec1	99	55.263	ENSPVAG00000010709	APOBEC1	97	55.263	Pteropus_vampyrus
ENSRNOG00000015411	Apobec1	99	68.421	ENSRBIG00000031161	APOBEC1	97	68.421	Rhinopithecus_bieti
ENSRNOG00000015411	Apobec1	99	68.421	ENSRROG00000033576	APOBEC1	97	68.421	Rhinopithecus_roxellana
ENSRNOG00000015411	Apobec1	76	68.786	ENSSBOG00000030587	APOBEC1	98	68.786	Saimiri_boliviensis_boliviensis
ENSRNOG00000015411	Apobec1	95	62.844	ENSSHAG00000008925	APOBEC1	96	62.844	Sarcophilus_harrisii
ENSRNOG00000015411	Apobec1	75	61.628	ENSSARG00000000032	-	100	61.628	Sorex_araneus
ENSRNOG00000015411	Apobec1	56	68.217	ENSSARG00000011972	-	98	68.217	Sorex_araneus
ENSRNOG00000015411	Apobec1	89	44.498	ENSSPUG00000009044	-	79	44.498	Sphenodon_punctatus
ENSRNOG00000015411	Apobec1	99	68.421	ENSSSCG00000000668	APOBEC1	97	68.421	Sus_scrofa
ENSRNOG00000015411	Apobec1	63	52.740	ENSTGUG00000013118	-	100	52.740	Taeniopygia_guttata
ENSRNOG00000015411	Apobec1	93	66.667	ENSTBEG00000010043	APOBEC1	90	66.667	Tupaia_belangeri
ENSRNOG00000015411	Apobec1	82	67.914	ENSTTRG00000014015	APOBEC1	100	67.914	Tursiops_truncatus
ENSRNOG00000015411	Apobec1	99	66.667	ENSUAMG00000011636	APOBEC1	93	66.667	Ursus_americanus
ENSRNOG00000015411	Apobec1	99	66.667	ENSUMAG00000016552	APOBEC1	93	66.667	Ursus_maritimus
ENSRNOG00000015411	Apobec1	99	66.667	ENSVPAG00000001343	APOBEC1	97	66.667	Vicugna_pacos
ENSRNOG00000015411	Apobec1	99	69.298	ENSVVUG00000010522	APOBEC1	97	69.298	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	10781591.	NAS	Function
GO:0003729	mRNA binding	9792439.	IDA	Function
GO:0004126	cytidine deaminase activity	21873635.	IBA	Function
GO:0004126	cytidine deaminase activity	8511591.15448152.	IDA	Function
GO:0004126	cytidine deaminase activity	10781591.	NAS	Function
GO:0004131	cytosine deaminase activity	12697753.	IDA	Function
GO:0005515	protein binding	10781591.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9371802.	IDA	Component
GO:0005634	nucleus	10781591.	NAS	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	9371802.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006641	triglyceride metabolic process	-	IEA	Process
GO:0006641	triglyceride metabolic process	-	ISO	Process
GO:0006970	response to osmotic stress	10939631.	IDA	Process
GO:0008047	enzyme activator activity	9792439.	IDA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0009972	cytidine deamination	-	IEA	Process
GO:0010043	response to zinc ion	10498758.	IEP	Process
GO:0010332	response to gamma radiation	-	IEA	Process
GO:0010332	response to gamma radiation	-	ISO	Process
GO:0016554	cytidine to uridine editing	21873635.	IBA	Process
GO:0016554	cytidine to uridine editing	12020819.	IDA	Process
GO:0016554	cytidine to uridine editing	-	ISO	Process
GO:0016556	mRNA modification	8511591.	IDA	Process
GO:0016556	mRNA modification	-	ISO	Process
GO:0017091	AU-rich element binding	-	IEA	Function
GO:0017091	AU-rich element binding	-	ISO	Function
GO:0019904	protein domain specific binding	9792439.	IPI	Function
GO:0032869	cellular response to insulin stimulus	9667237.	IEP	Process
GO:0042127	regulation of cell proliferation	-	IEA	Process
GO:0042127	regulation of cell proliferation	-	ISO	Process
GO:0042157	lipoprotein metabolic process	-	ISO	Process
GO:0042158	lipoprotein biosynthetic process	-	IEA	Process
GO:0042158	lipoprotein biosynthetic process	-	ISO	Process
GO:0042493	response to drug	11116209.	IDA	Process
GO:0042953	lipoprotein transport	-	IEA	Process
GO:0042953	lipoprotein transport	-	ISO	Process
GO:0043021	ribonucleoprotein complex binding	9792439.	IPI	Function
GO:0043085	positive regulation of catalytic activity	-	IEA	Process
GO:0045471	response to ethanol	9826530.	IDA	Process
GO:0046087	cytidine metabolic process	10781591.	IC	Process
GO:0048255	mRNA stabilization	-	IEA	Process
GO:0048255	mRNA stabilization	-	ISO	Process
GO:0051592	response to calcium ion	11027667.	IDA	Process
GO:0051607	defense response to virus	15296758.	IDA	Process
GO:0070383	DNA cytosine deamination	12697753.	IDA	Process
GO:0080111	DNA demethylation	21873635.	IBA	Process
GO:0080111	DNA demethylation	-	ISO	Process
GO:0080111	DNA demethylation	-	ISS	Process
GO:0090209	negative regulation of triglyceride metabolic process	-	IEA	Process
GO:0090209	negative regulation of triglyceride metabolic process	-	ISO	Process
GO:0090310	negative regulation of methylation-dependent chromatin silencing	-	ISO	Process
GO:0090310	negative regulation of methylation-dependent chromatin silencing	-	ISS	Process
GO:0090366	positive regulation of mRNA modification	9792439.	IDA	Process