EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000015491 (Gene tree)
Gene ID: 309301
Gene Symbol: Rcl1
Alias: Ab1-353|Ac1292|LOC309301
Full Name: RNA terminal phosphate cyclase-like 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 77633 bases
Position: chr1:247228061-247305693
Accession: 1305320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020809	RTC	PF01137.21	3.8e-61	1	1
ENSRNOP00000073254	RTC	PF01137.21	9.1e-21	1	1
ENSRNOP00000044460	RTC	PF01137.21	1.3e-20	1	1
ENSRNOP00000020809	RTC_insert	PF05189.13	8e-37	1	1
ENSRNOP00000073254	RTC_insert	PF05189.13	2e-25	1	1
ENSRNOP00000044460	RTC_insert	PF05189.13	2.3e-25	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020809	-	1710	XM_006231208	ENSRNOP00000020809	373 (aa)	XP_006231270	G3V7Z1
ENSRNOT00000048910	-	1344	-	ENSRNOP00000044460	447 (aa)	-	Q7TQ76
ENSRNOT00000083511	-	1179	-	ENSRNOP00000073254	392 (aa)	-	A0A0G2K515

Gene Model

Click here to download ENSRNOG00000015491's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000015491's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000015491	Rcl1	100	96.783	ENSG00000120158	RCL1	100	96.783	Homo_sapiens
ENSRNOG00000015491	Rcl1	100	78.342	ENSAPOG00000015666	rcl1	100	78.342	Acanthochromis_polyacanthus
ENSRNOG00000015491	Rcl1	100	96.515	ENSAMEG00000002631	RCL1	100	96.515	Ailuropoda_melanoleuca
ENSRNOG00000015491	Rcl1	99	78.919	ENSACIG00000021195	rcl1	99	78.919	Amphilophus_citrinellus
ENSRNOG00000015491	Rcl1	100	77.540	ENSAOCG00000002223	rcl1	100	77.540	Amphiprion_ocellaris
ENSRNOG00000015491	Rcl1	100	77.807	ENSAPEG00000006905	rcl1	100	77.807	Amphiprion_percula
ENSRNOG00000015491	Rcl1	99	76.216	ENSATEG00000020026	rcl1	99	76.216	Anabas_testudineus
ENSRNOG00000015491	Rcl1	88	86.585	ENSAPLG00000006031	RCL1	100	86.585	Anas_platyrhynchos
ENSRNOG00000015491	Rcl1	100	84.718	ENSACAG00000003640	RCL1	100	84.718	Anolis_carolinensis
ENSRNOG00000015491	Rcl1	100	95.979	ENSANAG00000037372	RCL1	100	95.979	Aotus_nancymaae
ENSRNOG00000015491	Rcl1	99	78.649	ENSACLG00000021724	rcl1	99	78.649	Astatotilapia_calliptera
ENSRNOG00000015491	Rcl1	98	77.717	ENSAMXG00000033394	rcl1	99	77.717	Astyanax_mexicanus
ENSRNOG00000015491	Rcl1	99	46.809	WBGene00022852	ZK1127.5	99	46.809	Caenorhabditis_elegans
ENSRNOG00000015491	Rcl1	100	96.515	ENSCJAG00000011202	RCL1	100	96.515	Callithrix_jacchus
ENSRNOG00000015491	Rcl1	100	95.174	ENSCAFG00000002091	RCL1	100	95.174	Canis_familiaris
ENSRNOG00000015491	Rcl1	100	95.174	ENSCAFG00020000638	RCL1	78	95.174	Canis_lupus_dingo
ENSRNOG00000015491	Rcl1	100	94.102	ENSCHIG00000012407	RCL1	100	94.102	Capra_hircus
ENSRNOG00000015491	Rcl1	88	96.024	ENSTSYG00000009592	RCL1	97	95.028	Carlito_syrichta
ENSRNOG00000015491	Rcl1	67	81.657	ENSCAPG00000013575	RCL1	100	81.657	Cavia_aperea
ENSRNOG00000015491	Rcl1	100	95.174	ENSCPOG00000015354	RCL1	100	95.174	Cavia_porcellus
ENSRNOG00000015491	Rcl1	100	96.515	ENSCCAG00000033505	RCL1	100	96.515	Cebus_capucinus
ENSRNOG00000015491	Rcl1	100	95.979	ENSCATG00000034721	RCL1	100	95.979	Cercocebus_atys
ENSRNOG00000015491	Rcl1	100	95.442	ENSCLAG00000007445	RCL1	100	95.442	Chinchilla_lanigera
ENSRNOG00000015491	Rcl1	100	96.515	ENSCSAG00000008811	RCL1	100	96.515	Chlorocebus_sabaeus
ENSRNOG00000015491	Rcl1	87	80.495	ENSCHOG00000007216	RCL1	100	80.495	Choloepus_hoffmanni
ENSRNOG00000015491	Rcl1	100	88.204	ENSCPBG00000025481	RCL1	94	88.450	Chrysemys_picta_bellii
ENSRNOG00000015491	Rcl1	98	59.189	ENSCING00000019565	-	98	59.189	Ciona_intestinalis
ENSRNOG00000015491	Rcl1	95	30.110	ENSCSAVG00000007269	-	95	30.110	Ciona_savignyi
ENSRNOG00000015491	Rcl1	100	96.515	ENSCANG00000027099	RCL1	100	96.515	Colobus_angolensis_palliatus
ENSRNOG00000015491	Rcl1	100	97.855	ENSCGRG00001013748	Rcl1	100	97.855	Cricetulus_griseus_chok1gshd
ENSRNOG00000015491	Rcl1	88	97.561	ENSCGRG00000005843	Rcl1	99	97.561	Cricetulus_griseus_crigri
ENSRNOG00000015491	Rcl1	99	78.649	ENSCSEG00000000712	rcl1	97	78.649	Cynoglossus_semilaevis
ENSRNOG00000015491	Rcl1	99	79.730	ENSCVAG00000011536	rcl1	99	79.730	Cyprinodon_variegatus
ENSRNOG00000015491	Rcl1	98	76.022	ENSDARG00000038312	rcl1	100	76.022	Danio_rerio
ENSRNOG00000015491	Rcl1	71	94.340	ENSDNOG00000019911	RCL1	100	94.340	Dasypus_novemcinctus
ENSRNOG00000015491	Rcl1	100	95.442	ENSDORG00000015645	Rcl1	100	95.442	Dipodomys_ordii
ENSRNOG00000015491	Rcl1	99	53.439	FBgn0020909	Rtc1	98	53.439	Drosophila_melanogaster
ENSRNOG00000015491	Rcl1	72	100.000	ENSETEG00000014087	-	82	100.000	Echinops_telfairi
ENSRNOG00000015491	Rcl1	100	54.133	ENSEBUG00000016621	-	100	54.133	Eptatretus_burgeri
ENSRNOG00000015491	Rcl1	100	95.442	ENSEASG00005010653	RCL1	100	95.442	Equus_asinus_asinus
ENSRNOG00000015491	Rcl1	100	95.442	ENSECAG00000015973	RCL1	100	95.442	Equus_caballus
ENSRNOG00000015491	Rcl1	100	81.233	ENSEEUG00000009801	RCL1	100	81.233	Erinaceus_europaeus
ENSRNOG00000015491	Rcl1	100	76.738	ENSELUG00000007353	rcl1	100	76.738	Esox_lucius
ENSRNOG00000015491	Rcl1	100	94.906	ENSFCAG00000014557	RCL1	100	94.906	Felis_catus
ENSRNOG00000015491	Rcl1	95	83.099	ENSFALG00000010553	RCL1	94	83.099	Ficedula_albicollis
ENSRNOG00000015491	Rcl1	88	94.495	ENSFDAG00000004209	RCL1	100	94.495	Fukomys_damarensis
ENSRNOG00000015491	Rcl1	99	79.730	ENSFHEG00000011228	rcl1	99	79.730	Fundulus_heteroclitus
ENSRNOG00000015491	Rcl1	99	76.757	ENSGMOG00000004677	rcl1	99	77.027	Gadus_morhua
ENSRNOG00000015491	Rcl1	99	84.824	ENSGALG00000015024	RCL1	99	84.824	Gallus_gallus
ENSRNOG00000015491	Rcl1	99	77.568	ENSGAFG00000007257	rcl1	99	77.568	Gambusia_affinis
ENSRNOG00000015491	Rcl1	100	77.540	ENSGACG00000017474	rcl1	100	77.540	Gasterosteus_aculeatus
ENSRNOG00000015491	Rcl1	100	88.204	ENSGAGG00000003689	RCL1	100	88.204	Gopherus_agassizii
ENSRNOG00000015491	Rcl1	100	96.783	ENSGGOG00000015041	RCL1	100	96.783	Gorilla_gorilla
ENSRNOG00000015491	Rcl1	99	78.919	ENSHBUG00000001393	rcl1	99	78.919	Haplochromis_burtoni
ENSRNOG00000015491	Rcl1	100	94.906	ENSHGLG00000016452	RCL1	100	94.906	Heterocephalus_glaber_female
ENSRNOG00000015491	Rcl1	100	79.625	ENSHGLG00000005368	-	100	79.088	Heterocephalus_glaber_female
ENSRNOG00000015491	Rcl1	100	80.429	ENSHGLG00100018010	-	100	79.893	Heterocephalus_glaber_male
ENSRNOG00000015491	Rcl1	100	88.204	ENSHGLG00100008718	-	100	88.204	Heterocephalus_glaber_male
ENSRNOG00000015491	Rcl1	99	78.108	ENSHCOG00000020170	rcl1	99	78.108	Hippocampus_comes
ENSRNOG00000015491	Rcl1	98	78.804	ENSIPUG00000018054	RCL1	99	78.804	Ictalurus_punctatus
ENSRNOG00000015491	Rcl1	100	95.979	ENSSTOG00000000023	RCL1	100	95.979	Ictidomys_tridecemlineatus
ENSRNOG00000015491	Rcl1	100	95.442	ENSJJAG00000022803	-	100	95.442	Jaculus_jaculus
ENSRNOG00000015491	Rcl1	100	84.718	ENSJJAG00000015632	-	100	84.718	Jaculus_jaculus
ENSRNOG00000015491	Rcl1	54	71.144	ENSJJAG00000000764	-	95	71.134	Jaculus_jaculus
ENSRNOG00000015491	Rcl1	98	78.202	ENSKMAG00000011946	rcl1	99	78.202	Kryptolebias_marmoratus
ENSRNOG00000015491	Rcl1	99	75.405	ENSLBEG00000003957	rcl1	99	75.405	Labrus_bergylta
ENSRNOG00000015491	Rcl1	91	80.826	ENSLACG00000004594	RCL1	98	85.174	Latimeria_chalumnae
ENSRNOG00000015491	Rcl1	100	82.038	ENSLOCG00000010148	rcl1	98	82.038	Lepisosteus_oculatus
ENSRNOG00000015491	Rcl1	100	91.957	ENSLAFG00000017495	RCL1	100	91.957	Loxodonta_africana
ENSRNOG00000015491	Rcl1	100	96.515	ENSMFAG00000037906	RCL1	100	96.515	Macaca_fascicularis
ENSRNOG00000015491	Rcl1	100	96.515	ENSMNEG00000012288	RCL1	100	96.515	Macaca_nemestrina
ENSRNOG00000015491	Rcl1	100	96.515	ENSMLEG00000043088	RCL1	100	96.515	Mandrillus_leucophaeus
ENSRNOG00000015491	Rcl1	99	79.459	ENSMAMG00000008311	rcl1	99	79.459	Mastacembelus_armatus
ENSRNOG00000015491	Rcl1	99	78.649	ENSMZEG00005017292	rcl1	99	78.649	Maylandia_zebra
ENSRNOG00000015491	Rcl1	58	82.648	ENSMGAG00000002245	RCL1	97	82.547	Meleagris_gallopavo
ENSRNOG00000015491	Rcl1	58	97.674	ENSMAUG00000008922	Rcl1	100	97.674	Mesocricetus_auratus
ENSRNOG00000015491	Rcl1	100	94.370	ENSMICG00000015562	RCL1	100	94.370	Microcebus_murinus
ENSRNOG00000015491	Rcl1	100	98.928	ENSMOCG00000012145	Rcl1	100	98.928	Microtus_ochrogaster
ENSRNOG00000015491	Rcl1	99	75.472	ENSMMOG00000021264	rcl1	99	75.472	Mola_mola
ENSRNOG00000015491	Rcl1	95	92.676	ENSMODG00000015377	RCL1	94	92.676	Monodelphis_domestica
ENSRNOG00000015491	Rcl1	99	78.108	ENSMALG00000018618	rcl1	99	78.108	Monopterus_albus
ENSRNOG00000015491	Rcl1	100	99.196	MGP_CAROLIEiJ_G0022853	Rcl1	100	99.196	Mus_caroli
ENSRNOG00000015491	Rcl1	100	99.196	ENSMUSG00000024785	Rcl1	100	99.196	Mus_musculus
ENSRNOG00000015491	Rcl1	100	98.123	MGP_PahariEiJ_G0014346	Rcl1	100	98.123	Mus_pahari
ENSRNOG00000015491	Rcl1	100	98.391	MGP_SPRETEiJ_G0023771	Rcl1	100	98.391	Mus_spretus
ENSRNOG00000015491	Rcl1	100	95.442	ENSMPUG00000004998	RCL1	100	95.442	Mustela_putorius_furo
ENSRNOG00000015491	Rcl1	100	95.174	ENSMLUG00000009654	RCL1	100	95.174	Myotis_lucifugus
ENSRNOG00000015491	Rcl1	100	97.587	ENSNGAG00000015327	Rcl1	100	97.587	Nannospalax_galili
ENSRNOG00000015491	Rcl1	90	78.042	ENSNBRG00000019854	rcl1	96	74.581	Neolamprologus_brichardi
ENSRNOG00000015491	Rcl1	100	93.834	ENSNLEG00000008891	RCL1	100	93.834	Nomascus_leucogenys
ENSRNOG00000015491	Rcl1	100	85.791	ENSMEUG00000007653	RCL1	100	85.791	Notamacropus_eugenii
ENSRNOG00000015491	Rcl1	100	95.710	ENSOPRG00000010965	RCL1	100	95.710	Ochotona_princeps
ENSRNOG00000015491	Rcl1	88	78.614	ENSODEG00000004151	RCL1	96	79.268	Octodon_degus
ENSRNOG00000015491	Rcl1	99	78.919	ENSONIG00000003871	rcl1	99	78.919	Oreochromis_niloticus
ENSRNOG00000015491	Rcl1	67	86.166	ENSOANG00000013193	-	100	86.166	Ornithorhynchus_anatinus
ENSRNOG00000015491	Rcl1	100	96.247	ENSOCUG00000008161	RCL1	100	96.247	Oryctolagus_cuniculus
ENSRNOG00000015491	Rcl1	100	76.471	ENSORLG00000010443	rcl1	100	76.471	Oryzias_latipes
ENSRNOG00000015491	Rcl1	100	76.471	ENSORLG00020012211	rcl1	100	76.471	Oryzias_latipes_hni
ENSRNOG00000015491	Rcl1	100	76.203	ENSORLG00015001122	rcl1	100	76.203	Oryzias_latipes_hsok
ENSRNOG00000015491	Rcl1	100	78.075	ENSOMEG00000022976	rcl1	88	78.075	Oryzias_melastigma
ENSRNOG00000015491	Rcl1	100	94.370	ENSOGAG00000007480	RCL1	100	94.370	Otolemur_garnettii
ENSRNOG00000015491	Rcl1	100	94.370	ENSOARG00000013463	RCL1	100	94.370	Ovis_aries
ENSRNOG00000015491	Rcl1	100	96.515	ENSPPAG00000037958	RCL1	100	96.515	Pan_paniscus
ENSRNOG00000015491	Rcl1	100	94.370	ENSPPRG00000022645	RCL1	100	94.370	Panthera_pardus
ENSRNOG00000015491	Rcl1	87	94.479	ENSPTIG00000019031	RCL1	97	93.750	Panthera_tigris_altaica
ENSRNOG00000015491	Rcl1	100	96.247	ENSPTRG00000020743	RCL1	100	96.247	Pan_troglodytes
ENSRNOG00000015491	Rcl1	100	96.515	ENSPANG00000025151	RCL1	100	96.515	Papio_anubis
ENSRNOG00000015491	Rcl1	100	77.540	ENSPKIG00000021022	rcl1	100	77.540	Paramormyrops_kingsleyae
ENSRNOG00000015491	Rcl1	88	88.720	ENSPSIG00000012302	RCL1	100	88.720	Pelodiscus_sinensis
ENSRNOG00000015491	Rcl1	100	75.401	ENSPMGG00000024007	rcl1	100	75.401	Periophthalmus_magnuspinnatus
ENSRNOG00000015491	Rcl1	100	98.928	ENSPEMG00000023275	Rcl1	100	98.928	Peromyscus_maniculatus_bairdii
ENSRNOG00000015491	Rcl1	97	30.411	ENSPMAG00000009110	rtca	96	30.411	Petromyzon_marinus
ENSRNOG00000015491	Rcl1	100	92.761	ENSPCIG00000000188	RCL1	100	92.761	Phascolarctos_cinereus
ENSRNOG00000015491	Rcl1	99	78.378	ENSPFOG00000019682	rcl1	99	78.378	Poecilia_formosa
ENSRNOG00000015491	Rcl1	99	78.378	ENSPLAG00000022354	rcl1	99	78.378	Poecilia_latipinna
ENSRNOG00000015491	Rcl1	99	78.378	ENSPMEG00000008131	rcl1	99	78.378	Poecilia_mexicana
ENSRNOG00000015491	Rcl1	99	78.108	ENSPREG00000008032	rcl1	99	78.108	Poecilia_reticulata
ENSRNOG00000015491	Rcl1	100	96.515	ENSPPYG00000019244	RCL1	100	96.515	Pongo_abelii
ENSRNOG00000015491	Rcl1	100	85.255	ENSPCAG00000001440	RCL1	100	85.255	Procavia_capensis
ENSRNOG00000015491	Rcl1	100	95.710	ENSPCOG00000009611	RCL1	100	95.710	Propithecus_coquereli
ENSRNOG00000015491	Rcl1	100	95.442	ENSPVAG00000015752	RCL1	100	95.442	Pteropus_vampyrus
ENSRNOG00000015491	Rcl1	99	78.649	ENSPNYG00000012910	rcl1	99	78.649	Pundamilia_nyererei
ENSRNOG00000015491	Rcl1	99	78.016	ENSPNAG00000028307	rcl1	92	78.016	Pygocentrus_nattereri
ENSRNOG00000015491	Rcl1	100	96.247	ENSRBIG00000035818	RCL1	100	96.247	Rhinopithecus_bieti
ENSRNOG00000015491	Rcl1	100	96.515	ENSRROG00000029781	RCL1	100	96.515	Rhinopithecus_roxellana
ENSRNOG00000015491	Rcl1	98	36.216	YOL010W	-	97	36.170	Saccharomyces_cerevisiae
ENSRNOG00000015491	Rcl1	100	96.247	ENSSBOG00000026369	RCL1	100	96.247	Saimiri_boliviensis_boliviensis
ENSRNOG00000015491	Rcl1	88	91.515	ENSSHAG00000014086	RCL1	100	91.515	Sarcophilus_harrisii
ENSRNOG00000015491	Rcl1	100	78.342	ENSSFOG00015023020	rcl1	100	78.342	Scleropages_formosus
ENSRNOG00000015491	Rcl1	99	78.649	ENSSMAG00000019751	rcl1	85	78.649	Scophthalmus_maximus
ENSRNOG00000015491	Rcl1	100	77.540	ENSSDUG00000006349	rcl1	100	77.540	Seriola_dumerili
ENSRNOG00000015491	Rcl1	100	77.807	ENSSLDG00000022076	rcl1	100	77.807	Seriola_lalandi_dorsalis
ENSRNOG00000015491	Rcl1	100	94.638	ENSSARG00000009260	RCL1	100	94.638	Sorex_araneus
ENSRNOG00000015491	Rcl1	100	87.131	ENSSPUG00000016330	RCL1	100	87.131	Sphenodon_punctatus
ENSRNOG00000015491	Rcl1	100	79.412	ENSSPAG00000018038	rcl1	100	79.412	Stegastes_partitus
ENSRNOG00000015491	Rcl1	100	95.979	ENSSSCG00000005217	RCL1	83	95.979	Sus_scrofa
ENSRNOG00000015491	Rcl1	100	84.800	ENSTGUG00000005138	RCL1	100	84.800	Taeniopygia_guttata
ENSRNOG00000015491	Rcl1	99	77.838	ENSTRUG00000010493	rcl1	99	77.838	Takifugu_rubripes
ENSRNOG00000015491	Rcl1	99	76.694	ENSTNIG00000013214	rcl1	99	76.694	Tetraodon_nigroviridis
ENSRNOG00000015491	Rcl1	100	88.472	ENSTBEG00000016339	RCL1	100	88.472	Tupaia_belangeri
ENSRNOG00000015491	Rcl1	100	94.906	ENSTTRG00000016525	RCL1	100	94.906	Tursiops_truncatus
ENSRNOG00000015491	Rcl1	100	96.515	ENSUAMG00000005598	RCL1	100	96.605	Ursus_americanus
ENSRNOG00000015491	Rcl1	88	95.719	ENSUMAG00000017890	RCL1	97	95.719	Ursus_maritimus
ENSRNOG00000015491	Rcl1	88	96.330	ENSVPAG00000009188	RCL1	100	96.330	Vicugna_pacos
ENSRNOG00000015491	Rcl1	88	94.817	ENSVVUG00000007304	RCL1	89	94.817	Vulpes_vulpes
ENSRNOG00000015491	Rcl1	100	74.332	ENSXETG00000000592	rcl1	100	74.332	Xenopus_tropicalis
ENSRNOG00000015491	Rcl1	99	78.378	ENSXCOG00000004922	rcl1	99	78.378	Xiphophorus_couchianus
ENSRNOG00000015491	Rcl1	59	30.455	ENSXCOG00000008002	rtca	63	30.455	Xiphophorus_couchianus
ENSRNOG00000015491	Rcl1	99	78.378	ENSXMAG00000022366	RCL1	99	78.378	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	-	ISO	Process
GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process