EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000015642 (Gene tree)
Gene ID
298510
Gene Symbol
Pabpc4
Alias
LOC298510
Full Name
poly(A) binding protein%2C cytoplasmic 4
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
15298 bases
Position
chr5:140979435-140994732
Accession
1305015
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000053432PABPPF00658.181.1e-3111
ENSRNOP00000053432RRM_5PF13893.64.4e-0912
ENSRNOP00000053432RRM_5PF13893.64.4e-0922
ENSRNOP00000053432RRM_1PF00076.221.1e-9014
ENSRNOP00000053432RRM_1PF00076.221.1e-9024
ENSRNOP00000053432RRM_1PF00076.221.1e-9034
ENSRNOP00000053432RRM_1PF00076.221.1e-9044
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000056592-2611XM_006238798ENSRNOP00000053432644 (aa)XP_006238860G3V9N0
Gene Model
Click here to download ENSRNOG00000015642's gene model file
Pathways
Pathway IDPathway NameSource
rno03013RNA transportKEGG
rno03015mRNA surveillance pathwayKEGG
rno03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000015642's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000015642Pabpc45331.013ENSRNOG00000039876LOC6814105131.788
ENSRNOG00000015642Pabpc45830.952ENSRNOG00000023601Elavl47330.952
ENSRNOG00000015642Pabpc45737.500ENSRNOG00000023661Celf25537.500
ENSRNOG00000015642Pabpc410097.826ENSRNOG00000028592AABR07035074.110097.826
ENSRNOG00000015642Pabpc49968.396ENSRNOG00000014527Pabpc29868.082
ENSRNOG00000015642Pabpc49858.295ENSRNOG00000012750Pabpc1l9959.019
ENSRNOG00000015642Pabpc45766.573ENSRNOG00000003354Pabpc59566.391
ENSRNOG00000015642Pabpc49977.500ENSRNOG00000008639Pabpc19877.500
ENSRNOG00000015642Pabpc45831.579ENSRNOG00000006853Elavl28634.940
ENSRNOG00000015642Pabpc45968.207ENSRNOG00000029749Pabpc4l9968.207
ENSRNOG00000015642Pabpc49967.275ENSRNOG00000017367Pabpc69967.530
ENSRNOG00000015642Pabpc45138.636ENSRNOG00000010379Celf17038.636
ENSRNOG00000015642Pabpc45733.553ENSRNOG00000001069Elavl19533.553
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000015642Pabpc410097.981ENSG00000090621PABPC4100100.000Homo_sapiens
ENSRNOG00000015642Pabpc49981.464ENSAPOG00000001161pabpc410081.776Acanthochromis_polyacanthus
ENSRNOG00000015642Pabpc49854.016ENSAMEG00000015083-9953.858Ailuropoda_melanoleuca
ENSRNOG00000015642Pabpc410095.455ENSAMEG00000011535-10095.455Ailuropoda_melanoleuca
ENSRNOG00000015642Pabpc410081.776ENSACIG00000023343pabpc410081.679Amphilophus_citrinellus
ENSRNOG00000015642Pabpc49981.620ENSAOCG00000021529pabpc410081.527Amphiprion_ocellaris
ENSRNOG00000015642Pabpc49981.620ENSAPEG00000019196pabpc410081.527Amphiprion_percula
ENSRNOG00000015642Pabpc49980.930ENSATEG00000007402pabpc410080.793Anabas_testudineus
ENSRNOG00000015642Pabpc49987.869ENSAPLG00000009729-10087.869Anas_platyrhynchos
ENSRNOG00000015642Pabpc49986.189ENSACAG00000002544PABPC410086.189Anolis_carolinensis
ENSRNOG00000015642Pabpc410095.758ENSANAG00000025079PABPC410095.758Aotus_nancymaae
ENSRNOG00000015642Pabpc410081.317ENSACLG00000019558pabpc410081.930Astatotilapia_calliptera
ENSRNOG00000015642Pabpc49977.019ENSAMXG00000018779pabpc49976.227Astyanax_mexicanus
ENSRNOG00000015642Pabpc45686.228ENSBTAG00000048536-9386.228Bos_taurus
ENSRNOG00000015642Pabpc410097.984ENSBTAG00000017125PABPC410097.984Bos_taurus
ENSRNOG00000015642Pabpc410095.303ENSCJAG00000002512-10095.303Callithrix_jacchus
ENSRNOG00000015642Pabpc47985.606ENSCJAG00000045953-9287.500Callithrix_jacchus
ENSRNOG00000015642Pabpc410094.410ENSCAFG00000003081PABPC410094.410Canis_familiaris
ENSRNOG00000015642Pabpc410095.606ENSCAFG00020004161PABPC410095.606Canis_lupus_dingo
ENSRNOG00000015642Pabpc410077.640ENSCHIG00000023385-10077.640Capra_hircus
ENSRNOG00000015642Pabpc410095.758ENSCHIG00000019398-10095.758Capra_hircus
ENSRNOG00000015642Pabpc410095.758ENSTSYG00000006532PABPC410095.758Carlito_syrichta
ENSRNOG00000015642Pabpc49995.897ENSCAPG00000015984PABPC410095.897Cavia_aperea
ENSRNOG00000015642Pabpc410095.909ENSCPOG00000009552PABPC410095.909Cavia_porcellus
ENSRNOG00000015642Pabpc410095.455ENSCCAG00000037306PABPC410095.455Cebus_capucinus
ENSRNOG00000015642Pabpc410095.758ENSCATG00000042164PABPC410095.758Cercocebus_atys
ENSRNOG00000015642Pabpc410095.455ENSCLAG00000011899PABPC410095.455Chinchilla_lanigera
ENSRNOG00000015642Pabpc410095.758ENSCSAG00000001135PABPC410095.758Chlorocebus_sabaeus
ENSRNOG00000015642Pabpc48496.306ENSCHOG00000005327PABPC48196.306Choloepus_hoffmanni
ENSRNOG00000015642Pabpc49988.180ENSCPBG00000001038PABPC410088.180Chrysemys_picta_bellii
ENSRNOG00000015642Pabpc49995.545ENSCANG00000034177PABPC410095.545Colobus_angolensis_palliatus
ENSRNOG00000015642Pabpc410095.166ENSCGRG00001018166Pabpc49995.166Cricetulus_griseus_chok1gshd
ENSRNOG00000015642Pabpc49997.488ENSCGRG00000009777Pabpc49997.488Cricetulus_griseus_crigri
ENSRNOG00000015642Pabpc410080.551ENSCSEG00000000130pabpc410080.333Cynoglossus_semilaevis
ENSRNOG00000015642Pabpc49981.493ENSCVAG00000019246pabpc410082.171Cyprinodon_variegatus
ENSRNOG00000015642Pabpc49982.298ENSDARG00000059259pabpc410081.746Danio_rerio
ENSRNOG00000015642Pabpc49895.345ENSDNOG00000018444-9995.345Dasypus_novemcinctus
ENSRNOG00000015642Pabpc410098.447ENSDORG00000011581Pabpc410098.447Dipodomys_ordii
ENSRNOG00000015642Pabpc4100100.000ENSETEG00000018453-84100.000Echinops_telfairi
ENSRNOG00000015642Pabpc48661.302ENSETEG00000009172-9961.181Echinops_telfairi
ENSRNOG00000015642Pabpc49974.844ENSEBUG00000000992pabpc49974.571Eptatretus_burgeri
ENSRNOG00000015642Pabpc49774.209ENSEBUG00000013782pabpc49974.729Eptatretus_burgeri
ENSRNOG00000015642Pabpc410095.758ENSEASG00005014119PABPC410095.758Equus_asinus_asinus
ENSRNOG00000015642Pabpc410095.758ENSECAG00000009396PABPC410095.758Equus_caballus
ENSRNOG00000015642Pabpc410092.424ENSEEUG00000002962PABPC410092.424Erinaceus_europaeus
ENSRNOG00000015642Pabpc49981.562ENSELUG00000003195pabpc49980.952Esox_lucius
ENSRNOG00000015642Pabpc410095.758ENSFCAG00000015254-10095.758Felis_catus
ENSRNOG00000015642Pabpc49987.403ENSFALG00000000543PABPC410087.403Ficedula_albicollis
ENSRNOG00000015642Pabpc410095.758ENSFDAG00000020016-10095.758Fukomys_damarensis
ENSRNOG00000015642Pabpc49066.170ENSFDAG00000010581-10062.176Fukomys_damarensis
ENSRNOG00000015642Pabpc410081.470ENSFHEG00000007548pabpc410082.137Fundulus_heteroclitus
ENSRNOG00000015642Pabpc410080.734ENSGMOG00000019025pabpc410080.275Gadus_morhua
ENSRNOG00000015642Pabpc49988.180ENSGALG00000003800PABPC410088.180Gallus_gallus
ENSRNOG00000015642Pabpc49990.094ENSGAFG00000018195pabpc49895.000Gambusia_affinis
ENSRNOG00000015642Pabpc410080.092ENSGACG00000007179pabpc410080.611Gasterosteus_aculeatus
ENSRNOG00000015642Pabpc49988.025ENSGAGG00000001888PABPC410088.025Gopherus_agassizii
ENSRNOG00000015642Pabpc410095.606ENSGGOG00000004002PABPC410095.606Gorilla_gorilla
ENSRNOG00000015642Pabpc410081.470ENSHBUG00000020206pabpc410082.083Haplochromis_burtoni
ENSRNOG00000015642Pabpc410098.292ENSHGLG00000011162PABPC410098.292Heterocephalus_glaber_female
ENSRNOG00000015642Pabpc410098.292ENSHGLG00100001580PABPC410098.292Heterocephalus_glaber_male
ENSRNOG00000015642Pabpc410080.521ENSHCOG00000012694pabpc410080.704Hippocampus_comes
ENSRNOG00000015642Pabpc49881.132ENSIPUG00000016620pabpc49980.368Ictalurus_punctatus
ENSRNOG00000015642Pabpc410098.137ENSSTOG00000010416PABPC410098.137Ictidomys_tridecemlineatus
ENSRNOG00000015642Pabpc410095.186ENSJJAG00000007781Pabpc410095.186Jaculus_jaculus
ENSRNOG00000015642Pabpc49981.173ENSKMAG00000013597pabpc49981.356Kryptolebias_marmoratus
ENSRNOG00000015642Pabpc410080.488ENSLBEG00000013654pabpc410080.822Labrus_bergylta
ENSRNOG00000015642Pabpc49985.162ENSLACG00000011907PABPC410085.162Latimeria_chalumnae
ENSRNOG00000015642Pabpc49983.179ENSLOCG00000001877pabpc49982.875Lepisosteus_oculatus
ENSRNOG00000015642Pabpc410095.606ENSLAFG00000000151PABPC410095.606Loxodonta_africana
ENSRNOG00000015642Pabpc410095.758ENSMFAG00000041481PABPC410095.758Macaca_fascicularis
ENSRNOG00000015642Pabpc410095.758ENSMMUG00000007497PABPC410095.758Macaca_mulatta
ENSRNOG00000015642Pabpc410095.606ENSMNEG00000043054PABPC410095.606Macaca_nemestrina
ENSRNOG00000015642Pabpc410095.758ENSMLEG00000040716PABPC410095.758Mandrillus_leucophaeus
ENSRNOG00000015642Pabpc49981.366ENSMAMG00000010025pabpc49981.260Mastacembelus_armatus
ENSRNOG00000015642Pabpc410081.164ENSMZEG00005006141pabpc410081.776Maylandia_zebra
ENSRNOG00000015642Pabpc49986.395ENSMGAG00000005408PABPC410086.395Meleagris_gallopavo
ENSRNOG00000015642Pabpc47089.423ENSMAUG00000001295-9789.423Mesocricetus_auratus
ENSRNOG00000015642Pabpc475100.000ENSMAUG00000019763-8496.262Mesocricetus_auratus
ENSRNOG00000015642Pabpc45680.702ENSMAUG00000004089-9280.702Mesocricetus_auratus
ENSRNOG00000015642Pabpc49978.125ENSMICG00000036729-10080.382Microcebus_murinus
ENSRNOG00000015642Pabpc48996.348ENSMICG00000016633-10096.348Microcebus_murinus
ENSRNOG00000015642Pabpc410095.303ENSMOCG00000006763Pabpc49995.303Microtus_ochrogaster
ENSRNOG00000015642Pabpc410078.648ENSMMOG00000002363pabpc410079.141Mola_mola
ENSRNOG00000015642Pabpc45873.164ENSMODG00000018051-9173.164Monodelphis_domestica
ENSRNOG00000015642Pabpc49887.287ENSMODG00000017657-10086.910Monodelphis_domestica
ENSRNOG00000015642Pabpc49980.650ENSMALG00000011017pabpc410080.611Monopterus_albus
ENSRNOG00000015642Pabpc49985.217MGP_CAROLIEiJ_G0024864-10085.217Mus_caroli
ENSRNOG00000015642Pabpc410095.909MGP_CAROLIEiJ_G0026435-10098.582Mus_caroli
ENSRNOG00000015642Pabpc410098.447ENSMUSG00000011257Pabpc410098.810Mus_musculus
ENSRNOG00000015642Pabpc49995.699MGP_PahariEiJ_G0028765Pabpc410099.291Mus_pahari
ENSRNOG00000015642Pabpc49977.117MGP_SPRETEiJ_G0027415Pabpc410098.582Mus_spretus
ENSRNOG00000015642Pabpc49550.567ENSMPUG00000006836-10050.405Mustela_putorius_furo
ENSRNOG00000015642Pabpc410095.758ENSMPUG00000014414-10095.758Mustela_putorius_furo
ENSRNOG00000015642Pabpc410093.634ENSMLUG00000012068PABPC410093.634Myotis_lucifugus
ENSRNOG00000015642Pabpc410098.137ENSNGAG00000018292Pabpc410098.137Nannospalax_galili
ENSRNOG00000015642Pabpc45891.827ENSNBRG00000009708pabpc49891.827Neolamprologus_brichardi
ENSRNOG00000015642Pabpc46686.441ENSNBRG00000010047-7586.441Neolamprologus_brichardi
ENSRNOG00000015642Pabpc410098.137ENSNLEG00000011928PABPC410098.137Nomascus_leucogenys
ENSRNOG00000015642Pabpc48397.234ENSOPRG00000011984PABPC48697.234Ochotona_princeps
ENSRNOG00000015642Pabpc410095.152ENSODEG00000006592-10095.152Octodon_degus
ENSRNOG00000015642Pabpc49985.626ENSODEG00000017434-10085.626Octodon_degus
ENSRNOG00000015642Pabpc45285.000ENSODEG00000013457-10085.000Octodon_degus
ENSRNOG00000015642Pabpc410081.470ENSONIG00000008176pabpc410082.083Oreochromis_niloticus
ENSRNOG00000015642Pabpc49988.025ENSOANG00000010001PABPC410088.025Ornithorhynchus_anatinus
ENSRNOG00000015642Pabpc49695.253ENSOCUG00000000562PABPC48895.253Oryctolagus_cuniculus
ENSRNOG00000015642Pabpc49990.432ENSORLG00000017479pabpc49990.432Oryzias_latipes
ENSRNOG00000015642Pabpc49990.432ENSORLG00020018644pabpc49990.432Oryzias_latipes_hni
ENSRNOG00000015642Pabpc49990.432ENSORLG00015015042pabpc49990.432Oryzias_latipes_hsok
ENSRNOG00000015642Pabpc49981.931ENSOMEG00000014410pabpc49983.266Oryzias_melastigma
ENSRNOG00000015642Pabpc410097.682ENSOGAG00000004067PABPC410097.682Otolemur_garnettii
ENSRNOG00000015642Pabpc410095.758ENSOARG00000020060PABPC410095.758Ovis_aries
ENSRNOG00000015642Pabpc410095.606ENSPPAG00000043625PABPC410095.606Pan_paniscus
ENSRNOG00000015642Pabpc410095.758ENSPPRG00000024727PABPC410095.758Panthera_pardus
ENSRNOG00000015642Pabpc410095.758ENSPTIG00000005829PABPC410095.758Panthera_tigris_altaica
ENSRNOG00000015642Pabpc410095.606ENSPTRG00000000573PABPC410095.606Pan_troglodytes
ENSRNOG00000015642Pabpc410095.909ENSPANG00000009484PABPC410095.909Papio_anubis
ENSRNOG00000015642Pabpc49982.226ENSPKIG00000025356pabpc49982.126Paramormyrops_kingsleyae
ENSRNOG00000015642Pabpc49988.180ENSPSIG00000016892PABPC410088.180Pelodiscus_sinensis
ENSRNOG00000015642Pabpc410079.444ENSPMGG00000009073pabpc49979.353Periophthalmus_magnuspinnatus
ENSRNOG00000015642Pabpc410093.323ENSPEMG00000024193-9993.323Peromyscus_maniculatus_bairdii
ENSRNOG00000015642Pabpc410095.152ENSPEMG00000023569-9995.152Peromyscus_maniculatus_bairdii
ENSRNOG00000015642Pabpc49569.461ENSPMAG00000007885pabpc49968.472Petromyzon_marinus
ENSRNOG00000015642Pabpc48971.186ENSPMAG00000002836pabpc410071.864Petromyzon_marinus
ENSRNOG00000015642Pabpc49893.317ENSPCIG00000020674PABPC410093.095Phascolarctos_cinereus
ENSRNOG00000015642Pabpc410080.858ENSPFOG00000002682pabpc410081.832Poecilia_formosa
ENSRNOG00000015642Pabpc410080.704ENSPLAG00000010112pabpc410081.832Poecilia_latipinna
ENSRNOG00000015642Pabpc49981.182ENSPMEG00000019739pabpc410081.832Poecilia_mexicana
ENSRNOG00000015642Pabpc410081.164ENSPREG00000001589pabpc410081.832Poecilia_reticulata
ENSRNOG00000015642Pabpc410095.606ENSPPYG00000001506PABPC410095.606Pongo_abelii
ENSRNOG00000015642Pabpc410090.758ENSPCAG00000003341PABPC410090.758Procavia_capensis
ENSRNOG00000015642Pabpc410095.613ENSPCOG00000023725-10095.613Propithecus_coquereli
ENSRNOG00000015642Pabpc49978.438ENSPCOG00000025882-9593.069Propithecus_coquereli
ENSRNOG00000015642Pabpc49994.790ENSPVAG00000002187PABPC410094.790Pteropus_vampyrus
ENSRNOG00000015642Pabpc410081.317ENSPNYG00000006134pabpc410081.930Pundamilia_nyererei
ENSRNOG00000015642Pabpc410081.193ENSPNAG00000024355pabpc410081.442Pygocentrus_nattereri
ENSRNOG00000015642Pabpc410095.758ENSRBIG00000039761PABPC410095.758Rhinopithecus_bieti
ENSRNOG00000015642Pabpc410095.758ENSRROG00000033355PABPC410095.758Rhinopithecus_roxellana
ENSRNOG00000015642Pabpc410095.606ENSSBOG00000026193PABPC410095.606Saimiri_boliviensis_boliviensis
ENSRNOG00000015642Pabpc49888.748ENSSHAG00000018139PABPC410088.336Sarcophilus_harrisii
ENSRNOG00000015642Pabpc49983.280ENSSFOG00015023514pabpc49983.173Scleropages_formosus
ENSRNOG00000015642Pabpc49980.775ENSSMAG00000009007pabpc49981.173Scophthalmus_maximus
ENSRNOG00000015642Pabpc49981.056ENSSDUG00000012683pabpc49587.586Seriola_dumerili
ENSRNOG00000015642Pabpc49981.056ENSSLDG00000013025pabpc49785.217Seriola_lalandi_dorsalis
ENSRNOG00000015642Pabpc410088.182ENSSARG00000000310PABPC410088.182Sorex_araneus
ENSRNOG00000015642Pabpc49987.403ENSSPUG00000003204PABPC410087.326Sphenodon_punctatus
ENSRNOG00000015642Pabpc49981.366ENSSPAG00000009252pabpc49889.686Stegastes_partitus
ENSRNOG00000015642Pabpc48951.211ENSSSCG00000036170-9651.211Sus_scrofa
ENSRNOG00000015642Pabpc410095.909ENSSSCG00000003660-10095.909Sus_scrofa
ENSRNOG00000015642Pabpc49985.152ENSTGUG00000001266PABPC410085.152Taeniopygia_guttata
ENSRNOG00000015642Pabpc410080.431ENSTRUG00000005907pabpc49981.048Takifugu_rubripes
ENSRNOG00000015642Pabpc410076.852ENSTNIG00000016902pabpc49976.543Tetraodon_nigroviridis
ENSRNOG00000015642Pabpc49984.202ENSTBEG00000009035PABPC410084.202Tupaia_belangeri
ENSRNOG00000015642Pabpc49979.502ENSTTRG00000014340PABPC410083.361Tursiops_truncatus
ENSRNOG00000015642Pabpc410095.758ENSUAMG00000000303PABPC410095.758Ursus_americanus
ENSRNOG00000015642Pabpc410095.455ENSUMAG00000019585PABPC410098.113Ursus_maritimus
ENSRNOG00000015642Pabpc48392.857ENSVPAG00000010041PABPC47792.857Vicugna_pacos
ENSRNOG00000015642Pabpc410095.606ENSVVUG00000005215PABPC410095.606Vulpes_vulpes
ENSRNOG00000015642Pabpc49980.249ENSXETG00000010946pabpc410080.249Xenopus_tropicalis
ENSRNOG00000015642Pabpc46096.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSRNOG00000015642Pabpc49988.831ENSXCOG00000013190pabpc49689.623Xiphophorus_couchianus
ENSRNOG00000015642Pabpc410081.011ENSXMAG00000019007pabpc410081.679Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding21873635.IBAFunction
GO:0003729mRNA binding-ISOFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-ISOComponent
GO:0008143poly(A) binding21873635.IBAFunction
GO:0008143poly(A) binding-ISOFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0008266poly(U) RNA binding-ISOFunction
GO:0010494cytoplasmic stress granule21873635.IBAComponent
GO:0010494cytoplasmic stress granule-ISOComponent
GO:0017130poly(C) RNA binding-ISOFunction
GO:0043488regulation of mRNA stability-ISOProcess
GO:0061515myeloid cell development-ISOProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent
GO:1990904ribonucleoprotein complex-ISOComponent

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