EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000015701 (Gene tree)
Gene ID: 306873
Gene Symbol: Rreb1
Alias: LOC306873
Full Name: ras responsive element binding protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 126134 bases
Position: chr17:27539133-27665266
Accession: 1310904
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073072	zf-C2H2	PF00096.26	3.1e-42	1	6
ENSRNOP00000073072	zf-C2H2	PF00096.26	3.1e-42	2	6
ENSRNOP00000073072	zf-C2H2	PF00096.26	3.1e-42	3	6
ENSRNOP00000073072	zf-C2H2	PF00096.26	3.1e-42	4	6
ENSRNOP00000073072	zf-C2H2	PF00096.26	3.1e-42	5	6
ENSRNOP00000073072	zf-C2H2	PF00096.26	3.1e-42	6	6
ENSRNOP00000056967	zf-C2H2	PF00096.26	5.6e-41	1	6
ENSRNOP00000056967	zf-C2H2	PF00096.26	5.6e-41	2	6
ENSRNOP00000056967	zf-C2H2	PF00096.26	5.6e-41	3	6
ENSRNOP00000056967	zf-C2H2	PF00096.26	5.6e-41	4	6
ENSRNOP00000056967	zf-C2H2	PF00096.26	5.6e-41	5	6
ENSRNOP00000056967	zf-C2H2	PF00096.26	5.6e-41	6	6
ENSRNOP00000056967	zf-met	PF12874.7	2e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000079298	-	8343	XM_006253812	ENSRNOP00000073072	1751 (aa)	XP_006253874	A0A0G2K4K0
ENSRNOT00000060218	-	8441	XM_006253816	ENSRNOP00000056967	1697 (aa)	XP_006253878	D3ZI11

Gene Model

Click here to download ENSRNOG00000015701's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000015701's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000015701	Rreb1	56	44.000	ENSRNOG00000048394	Zfp560	74	51.020
ENSRNOG00000015701	Rreb1	54	35.714	ENSRNOG00000025937	Zfp26	75	48.980
ENSRNOG00000015701	Rreb1	56	34.000	ENSRNOG00000049259	LOC102549842	85	46.939

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000015701	Rreb1	100	79.263	ENSG00000124782	RREB1	100	93.382	Homo_sapiens
ENSRNOG00000015701	Rreb1	99	61.534	ENSAPLG00000004726	RREB1	100	61.682	Anas_platyrhynchos
ENSRNOG00000015701	Rreb1	99	58.244	ENSACAG00000000520	RREB1	100	59.173	Anolis_carolinensis
ENSRNOG00000015701	Rreb1	100	79.070	ENSANAG00000029040	RREB1	100	83.747	Aotus_nancymaae
ENSRNOG00000015701	Rreb1	93	53.207	ENSAMXG00000019028	rreb1a	95	53.669	Astyanax_mexicanus
ENSRNOG00000015701	Rreb1	96	43.017	ENSAMXG00000015314	rreb1b	97	42.715	Astyanax_mexicanus
ENSRNOG00000015701	Rreb1	100	78.664	ENSCJAG00000021358	RREB1	100	83.559	Callithrix_jacchus
ENSRNOG00000015701	Rreb1	100	76.152	ENSCAFG00000009527	RREB1	100	83.019	Canis_familiaris
ENSRNOG00000015701	Rreb1	100	75.248	ENSCAFG00020013260	RREB1	100	75.993	Canis_lupus_dingo
ENSRNOG00000015701	Rreb1	100	78.608	ENSCCAG00000021905	RREB1	100	83.196	Cebus_capucinus
ENSRNOG00000015701	Rreb1	100	79.093	ENSCATG00000043662	RREB1	100	84.298	Cercocebus_atys
ENSRNOG00000015701	Rreb1	100	79.174	ENSCSAG00000007376	RREB1	100	79.287	Chlorocebus_sabaeus
ENSRNOG00000015701	Rreb1	99	62.281	ENSCPBG00000008709	RREB1	100	63.069	Chrysemys_picta_bellii
ENSRNOG00000015701	Rreb1	100	79.103	ENSCANG00000032835	RREB1	100	83.898	Colobus_angolensis_palliatus
ENSRNOG00000015701	Rreb1	95	50.980	ENSCSEG00000018342	rreb1a	86	50.980	Cynoglossus_semilaevis
ENSRNOG00000015701	Rreb1	99	45.359	ENSDARG00000063701	rreb1a	92	62.755	Danio_rerio
ENSRNOG00000015701	Rreb1	100	81.498	ENSDORG00000006979	Rreb1	99	86.150	Dipodomys_ordii
ENSRNOG00000015701	Rreb1	100	79.181	ENSEASG00005012054	RREB1	100	79.125	Equus_asinus_asinus
ENSRNOG00000015701	Rreb1	100	79.461	ENSECAG00000018169	RREB1	100	79.237	Equus_caballus
ENSRNOG00000015701	Rreb1	99	60.956	ENSFALG00000013231	RREB1	96	61.230	Ficedula_albicollis
ENSRNOG00000015701	Rreb1	98	85.590	ENSFDAG00000004213	RREB1	96	65.145	Fukomys_damarensis
ENSRNOG00000015701	Rreb1	100	60.624	ENSGALG00000012799	RREB1	100	61.095	Gallus_gallus
ENSRNOG00000015701	Rreb1	96	60.133	ENSGAGG00000002213	RREB1	100	61.091	Gopherus_agassizii
ENSRNOG00000015701	Rreb1	100	79.694	ENSGGOG00000004561	RREB1	100	85.102	Gorilla_gorilla
ENSRNOG00000015701	Rreb1	89	50.980	ENSLBEG00000013512	rreb1a	93	50.980	Labrus_bergylta
ENSRNOG00000015701	Rreb1	93	53.684	ENSLACG00000009283	RREB1	98	53.791	Latimeria_chalumnae
ENSRNOG00000015701	Rreb1	92	52.378	ENSLOCG00000011702	rreb1b	96	51.801	Lepisosteus_oculatus
ENSRNOG00000015701	Rreb1	100	73.797	ENSLAFG00000005300	RREB1	100	73.070	Loxodonta_africana
ENSRNOG00000015701	Rreb1	100	79.445	ENSMFAG00000000389	RREB1	100	84.448	Macaca_fascicularis
ENSRNOG00000015701	Rreb1	100	79.332	ENSMMUG00000007852	RREB1	100	84.298	Macaca_mulatta
ENSRNOG00000015701	Rreb1	100	79.320	ENSMNEG00000038556	RREB1	100	84.448	Macaca_nemestrina
ENSRNOG00000015701	Rreb1	100	79.207	ENSMLEG00000040965	RREB1	100	84.448	Mandrillus_leucophaeus
ENSRNOG00000015701	Rreb1	99	61.399	ENSMGAG00000003910	RREB1	100	61.279	Meleagris_gallopavo
ENSRNOG00000015701	Rreb1	100	79.898	ENSMICG00000003683	RREB1	100	84.876	Microcebus_murinus
ENSRNOG00000015701	Rreb1	100	67.059	ENSMODG00000009892	RREB1	100	68.011	Monodelphis_domestica
ENSRNOG00000015701	Rreb1	100	76.457	ENSMPUG00000000558	RREB1	100	76.698	Mustela_putorius_furo
ENSRNOG00000015701	Rreb1	100	76.671	ENSMLUG00000013153	RREB1	100	76.721	Myotis_lucifugus
ENSRNOG00000015701	Rreb1	100	86.620	ENSNGAG00000021506	Rreb1	100	86.297	Nannospalax_galili
ENSRNOG00000015701	Rreb1	67	54.167	ENSNBRG00000016744	rreb1a	91	53.608	Neolamprologus_brichardi
ENSRNOG00000015701	Rreb1	100	78.470	ENSNLEG00000011554	RREB1	100	84.523	Nomascus_leucogenys
ENSRNOG00000015701	Rreb1	100	67.346	ENSMEUG00000015377	RREB1	100	67.797	Notamacropus_eugenii
ENSRNOG00000015701	Rreb1	99	66.375	ENSOPRG00000001966	RREB1	97	66.550	Ochotona_princeps
ENSRNOG00000015701	Rreb1	100	74.297	ENSODEG00000007124	RREB1	100	74.473	Octodon_degus
ENSRNOG00000015701	Rreb1	95	50.980	ENSOMEG00000001389	rreb1a	96	50.980	Oryzias_melastigma
ENSRNOG00000015701	Rreb1	100	74.633	ENSOGAG00000025755	RREB1	100	74.831	Otolemur_garnettii
ENSRNOG00000015701	Rreb1	100	79.320	ENSPPAG00000037017	RREB1	100	84.823	Pan_paniscus
ENSRNOG00000015701	Rreb1	100	77.873	ENSPPRG00000012144	RREB1	100	78.295	Panthera_pardus
ENSRNOG00000015701	Rreb1	100	79.263	ENSPTRG00000017697	RREB1	100	84.748	Pan_troglodytes
ENSRNOG00000015701	Rreb1	100	79.263	ENSPANG00000019553	RREB1	100	84.298	Papio_anubis
ENSRNOG00000015701	Rreb1	97	50.980	ENSPKIG00000006372	rreb1b	95	52.220	Paramormyrops_kingsleyae
ENSRNOG00000015701	Rreb1	99	61.660	ENSPSIG00000006582	RREB1	100	62.310	Pelodiscus_sinensis
ENSRNOG00000015701	Rreb1	100	86.910	ENSPEMG00000014153	Rreb1	100	86.966	Peromyscus_maniculatus_bairdii
ENSRNOG00000015701	Rreb1	96	66.060	ENSPCIG00000012644	RREB1	100	66.403	Phascolarctos_cinereus
ENSRNOG00000015701	Rreb1	100	78.697	ENSPPYG00000016204	RREB1	100	79.150	Pongo_abelii
ENSRNOG00000015701	Rreb1	100	79.443	ENSPCOG00000014821	RREB1	100	84.424	Propithecus_coquereli
ENSRNOG00000015701	Rreb1	100	77.759	ENSPVAG00000014081	RREB1	100	77.985	Pteropus_vampyrus
ENSRNOG00000015701	Rreb1	98	46.552	ENSPNAG00000000486	rreb1a	95	45.931	Pygocentrus_nattereri
ENSRNOG00000015701	Rreb1	100	79.353	ENSRROG00000039603	RREB1	100	84.123	Rhinopithecus_roxellana
ENSRNOG00000015701	Rreb1	100	78.778	ENSSBOG00000025257	RREB1	100	83.196	Saimiri_boliviensis_boliviensis
ENSRNOG00000015701	Rreb1	96	77.277	ENSSHAG00000005295	RREB1	100	71.172	Sarcophilus_harrisii
ENSRNOG00000015701	Rreb1	93	48.570	ENSSFOG00015001117	rreb1b	94	48.507	Scleropages_formosus
ENSRNOG00000015701	Rreb1	99	60.035	ENSSPUG00000007686	RREB1	100	60.762	Sphenodon_punctatus
ENSRNOG00000015701	Rreb1	99	61.027	ENSTGUG00000002309	RREB1	99	63.406	Taeniopygia_guttata
ENSRNOG00000015701	Rreb1	100	77.765	ENSUAMG00000003741	RREB1	100	77.653	Ursus_americanus
ENSRNOG00000015701	Rreb1	100	83.572	ENSVVUG00000005050	RREB1	96	83.497	Vulpes_vulpes
ENSRNOG00000015701	Rreb1	95	55.323	ENSXETG00000015435	rreb1	98	55.153	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	21873635.	IBA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0010634	positive regulation of epithelial cell migration	-	IEA	Process
GO:0010634	positive regulation of epithelial cell migration	-	ISO	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0033601	positive regulation of mammary gland epithelial cell proliferation	-	IEA	Process
GO:0033601	positive regulation of mammary gland epithelial cell proliferation	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:1900026	positive regulation of substrate adhesion-dependent cell spreading	-	IEA	Process
GO:1900026	positive regulation of substrate adhesion-dependent cell spreading	-	ISO	Process
GO:1903691	positive regulation of wound healing, spreading of epidermal cells	-	IEA	Process
GO:1903691	positive regulation of wound healing, spreading of epidermal cells	-	ISO	Process
GO:2000394	positive regulation of lamellipodium morphogenesis	-	IEA	Process
GO:2000394	positive regulation of lamellipodium morphogenesis	-	ISO	Process