EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000016041 (Gene tree)
Gene ID: 308266
Gene Symbol: Zc3h12d
Alias: LOC308266
Full Name: zinc finger CCCH type containing 12D
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 34500 bases
Position: chr1:1938419-1972918
Accession: 1597152
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000059263	RNase_Zc3h12a	PF11977.8	1.4e-65	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000065646	-	3691	XM_006227616	ENSRNOP00000059263	533 (aa)	XP_006227678	D4A0I4

Gene Model

Click here to download ENSRNOG00000016041's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000016041's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000016041	Zc3h12d	56	60.738	ENSRNOG00000011508	Zc3h12b	68	58.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000016041	Zc3h12d	100	64.935	ENSG00000178199	ZC3H12D	98	91.346	Homo_sapiens
ENSRNOG00000016041	Zc3h12d	50	86.466	ENSAMEG00000018283	-	100	86.466	Ailuropoda_melanoleuca
ENSRNOG00000016041	Zc3h12d	58	70.874	ENSAPLG00000008379	ZC3H12D	94	70.874	Anas_platyrhynchos
ENSRNOG00000016041	Zc3h12d	59	63.190	ENSACAG00000006984	ZC3H12D	98	63.190	Anolis_carolinensis
ENSRNOG00000016041	Zc3h12d	100	65.250	ENSANAG00000020234	ZC3H12D	100	65.619	Aotus_nancymaae
ENSRNOG00000016041	Zc3h12d	99	61.609	ENSBTAG00000007388	ZC3H12D	99	61.609	Bos_taurus
ENSRNOG00000016041	Zc3h12d	100	64.641	ENSCJAG00000019606	ZC3H12D	89	77.483	Callithrix_jacchus
ENSRNOG00000016041	Zc3h12d	50	85.019	ENSCAFG00000000375	ZC3H12D	69	85.019	Canis_familiaris
ENSRNOG00000016041	Zc3h12d	99	62.340	ENSCHIG00000025964	ZC3H12D	99	62.340	Capra_hircus
ENSRNOG00000016041	Zc3h12d	91	60.000	ENSCAPG00000014473	ZC3H12D	94	60.000	Cavia_aperea
ENSRNOG00000016041	Zc3h12d	91	65.361	ENSCPOG00000014608	ZC3H12D	95	65.361	Cavia_porcellus
ENSRNOG00000016041	Zc3h12d	100	64.140	ENSCCAG00000013595	ZC3H12D	100	64.207	Cebus_capucinus
ENSRNOG00000016041	Zc3h12d	100	64.804	ENSCATG00000038224	ZC3H12D	89	76.821	Cercocebus_atys
ENSRNOG00000016041	Zc3h12d	89	66.806	ENSCLAG00000002831	ZC3H12D	94	66.806	Chinchilla_lanigera
ENSRNOG00000016041	Zc3h12d	99	63.822	ENSCSAG00000017217	ZC3H12D	99	64.074	Chlorocebus_sabaeus
ENSRNOG00000016041	Zc3h12d	100	62.909	ENSCANG00000028774	ZC3H12D	89	76.821	Colobus_angolensis_palliatus
ENSRNOG00000016041	Zc3h12d	100	79.554	ENSCGRG00001019159	Zc3h12d	100	79.554	Cricetulus_griseus_chok1gshd
ENSRNOG00000016041	Zc3h12d	100	79.554	ENSCGRG00000006178	Zc3h12d	100	79.554	Cricetulus_griseus_crigri
ENSRNOG00000016041	Zc3h12d	60	82.704	ENSDORG00000027483	-	99	82.704	Dipodomys_ordii
ENSRNOG00000016041	Zc3h12d	85	65.272	ENSEASG00005008940	ZC3H12D	79	82.759	Equus_asinus_asinus
ENSRNOG00000016041	Zc3h12d	100	61.062	ENSECAG00000017135	ZC3H12D	98	62.254	Equus_caballus
ENSRNOG00000016041	Zc3h12d	85	74.172	ENSEEUG00000000087	-	84	74.172	Erinaceus_europaeus
ENSRNOG00000016041	Zc3h12d	99	62.936	ENSFCAG00000011290	ZC3H12D	94	77.419	Felis_catus
ENSRNOG00000016041	Zc3h12d	58	71.336	ENSFALG00000013127	ZC3H12D	98	71.336	Ficedula_albicollis
ENSRNOG00000016041	Zc3h12d	54	85.417	ENSFDAG00000000874	ZC3H12D	74	85.417	Fukomys_damarensis
ENSRNOG00000016041	Zc3h12d	65	63.610	ENSGALG00000038782	ZC3H12D	55	63.610	Gallus_gallus
ENSRNOG00000016041	Zc3h12d	100	65.306	ENSGGOG00000005511	ZC3H12D	89	77.483	Gorilla_gorilla
ENSRNOG00000016041	Zc3h12d	100	72.846	ENSSTOG00000013975	ZC3H12D	100	72.846	Ictidomys_tridecemlineatus
ENSRNOG00000016041	Zc3h12d	55	65.646	ENSLACG00000016816	ZC3H12D	93	65.646	Latimeria_chalumnae
ENSRNOG00000016041	Zc3h12d	58	82.958	ENSLAFG00000021535	-	97	82.958	Loxodonta_africana
ENSRNOG00000016041	Zc3h12d	100	64.618	ENSMFAG00000034693	ZC3H12D	89	76.159	Macaca_fascicularis
ENSRNOG00000016041	Zc3h12d	100	64.246	ENSMNEG00000004043	ZC3H12D	89	76.159	Macaca_nemestrina
ENSRNOG00000016041	Zc3h12d	56	70.707	ENSMGAG00000012594	ZC3H12D	92	70.707	Meleagris_gallopavo
ENSRNOG00000016041	Zc3h12d	100	63.869	ENSMICG00000044838	ZC3H12D	100	64.599	Microcebus_murinus
ENSRNOG00000016041	Zc3h12d	100	80.374	ENSMOCG00000015590	Zc3h12d	100	80.374	Microtus_ochrogaster
ENSRNOG00000016041	Zc3h12d	56	79.866	ENSMODG00000016829	-	94	79.866	Monodelphis_domestica
ENSRNOG00000016041	Zc3h12d	100	86.116	MGP_CAROLIEiJ_G0015104	Zc3h12d	100	86.116	Mus_caroli
ENSRNOG00000016041	Zc3h12d	100	86.304	ENSMUSG00000039981	Zc3h12d	100	86.304	Mus_musculus
ENSRNOG00000016041	Zc3h12d	100	86.116	MGP_PahariEiJ_G0023723	Zc3h12d	100	86.116	Mus_pahari
ENSRNOG00000016041	Zc3h12d	100	86.867	MGP_SPRETEiJ_G0015911	Zc3h12d	100	86.867	Mus_spretus
ENSRNOG00000016041	Zc3h12d	51	82.847	ENSMPUG00000018072	-	99	82.847	Mustela_putorius_furo
ENSRNOG00000016041	Zc3h12d	58	82.315	ENSMLUG00000029238	ZC3H12D	100	82.315	Myotis_lucifugus
ENSRNOG00000016041	Zc3h12d	90	65.361	ENSNGAG00000010502	Zc3h12d	95	65.361	Nannospalax_galili
ENSRNOG00000016041	Zc3h12d	82	71.429	ENSNLEG00000015313	-	96	71.429	Nomascus_leucogenys
ENSRNOG00000016041	Zc3h12d	52	78.495	ENSMEUG00000004686	-	98	78.495	Notamacropus_eugenii
ENSRNOG00000016041	Zc3h12d	100	60.075	ENSOPRG00000014034	ZC3H12D	100	61.007	Ochotona_princeps
ENSRNOG00000016041	Zc3h12d	91	64.124	ENSODEG00000002553	ZC3H12D	93	64.124	Octodon_degus
ENSRNOG00000016041	Zc3h12d	50	86.466	ENSOCUG00000007690	-	85	86.466	Oryctolagus_cuniculus
ENSRNOG00000016041	Zc3h12d	99	63.534	ENSOGAG00000031025	ZC3H12D	99	63.534	Otolemur_garnettii
ENSRNOG00000016041	Zc3h12d	86	78.344	ENSOARG00000002626	ZC3H12D	99	78.344	Ovis_aries
ENSRNOG00000016041	Zc3h12d	100	65.306	ENSPPAG00000041304	ZC3H12D	89	77.483	Pan_paniscus
ENSRNOG00000016041	Zc3h12d	99	61.453	ENSPPRG00000004536	ZC3H12D	94	76.774	Panthera_pardus
ENSRNOG00000016041	Zc3h12d	100	65.306	ENSPTRG00000050357	ZC3H12D	89	77.483	Pan_troglodytes
ENSRNOG00000016041	Zc3h12d	100	64.804	ENSPANG00000034987	ZC3H12D	89	76.821	Papio_anubis
ENSRNOG00000016041	Zc3h12d	55	69.231	ENSPSIG00000016475	ZC3H12D	97	69.231	Pelodiscus_sinensis
ENSRNOG00000016041	Zc3h12d	100	78.879	ENSPEMG00000010962	Zc3h12d	100	78.879	Peromyscus_maniculatus_bairdii
ENSRNOG00000016041	Zc3h12d	100	65.428	ENSPPYG00000017087	ZC3H12D	100	65.428	Pongo_abelii
ENSRNOG00000016041	Zc3h12d	100	53.506	ENSPCAG00000002991	ZC3H12D	100	53.506	Procavia_capensis
ENSRNOG00000016041	Zc3h12d	100	63.570	ENSPCOG00000017645	ZC3H12D	88	76.159	Propithecus_coquereli
ENSRNOG00000016041	Zc3h12d	100	63.501	ENSRBIG00000012478	ZC3H12D	89	76.159	Rhinopithecus_bieti
ENSRNOG00000016041	Zc3h12d	100	63.501	ENSRROG00000038053	ZC3H12D	89	76.159	Rhinopithecus_roxellana
ENSRNOG00000016041	Zc3h12d	100	64.007	ENSSBOG00000023337	ZC3H12D	89	76.159	Saimiri_boliviensis_boliviensis
ENSRNOG00000016041	Zc3h12d	56	78.859	ENSSHAG00000017000	ZC3H12D	98	53.860	Sarcophilus_harrisii
ENSRNOG00000016041	Zc3h12d	100	61.101	ENSSSCG00000004109	ZC3H12D	98	61.101	Sus_scrofa
ENSRNOG00000016041	Zc3h12d	58	69.055	ENSTGUG00000010664	ZC3H12D	98	69.055	Taeniopygia_guttata
ENSRNOG00000016041	Zc3h12d	58	79.870	ENSTBEG00000000892	-	99	79.870	Tupaia_belangeri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	-	IEA	Component
GO:0000932	P-body	-	ISO	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006402	mRNA catabolic process	-	ISO	Process
GO:0030308	negative regulation of cell growth	-	ISO	Process
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0042130	negative regulation of T cell proliferation	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0061158	3'-UTR-mediated mRNA destabilization	-	ISO	Process
GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	-	ISO	Process