EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000016226 (Gene tree)
Gene ID: 291071
Gene Symbol: Rpp40
Alias: LOC291071|MGC108849
Full Name: ribonuclease P/MRP subunit p40
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 9087 bases
Position: chr17:29638677-29647763
Accession: 1310228
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000021877	Ribonuc_P_40	PF08584.11	1e-94	1	1
ENSRNOP00000062962	Ribonuc_P_40	PF08584.11	1.7e-94	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000021877	-	1178	-	ENSRNOP00000021877	303 (aa)	-	Q5BK64
ENSRNOT00000068617	-	1183	XM_006253790	ENSRNOP00000062962	363 (aa)	XP_006253852	Q5BK64

Gene Model

Click here to download ENSRNOG00000016226's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG
rno03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000016226's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000016226	Rpp40	100	84.158	ENSG00000124787	RPP40	100	84.158	Homo_sapiens
ENSRNOG00000016226	Rpp40	72	33.790	ENSAPOG00000008660	rpp40	71	33.790	Acanthochromis_polyacanthus
ENSRNOG00000016226	Rpp40	100	85.399	ENSAMEG00000012938	RPP40	100	85.399	Ailuropoda_melanoleuca
ENSRNOG00000016226	Rpp40	98	36.964	ENSACIG00000003617	rpp40	98	36.740	Amphilophus_citrinellus
ENSRNOG00000016226	Rpp40	98	38.591	ENSAOCG00000011846	rpp40	99	37.255	Amphiprion_ocellaris
ENSRNOG00000016226	Rpp40	98	38.591	ENSAPEG00000001322	rpp40	99	37.255	Amphiprion_percula
ENSRNOG00000016226	Rpp40	98	39.333	ENSATEG00000006584	rpp40	99	38.719	Anabas_testudineus
ENSRNOG00000016226	Rpp40	99	68.874	ENSAPLG00000005691	RPP40	99	68.874	Anas_platyrhynchos
ENSRNOG00000016226	Rpp40	99	65.781	ENSACAG00000006550	RPP40	88	63.510	Anolis_carolinensis
ENSRNOG00000016226	Rpp40	100	81.518	ENSANAG00000029246	RPP40	100	80.992	Aotus_nancymaae
ENSRNOG00000016226	Rpp40	98	39.437	ENSACLG00000015883	rpp40	96	39.437	Astatotilapia_calliptera
ENSRNOG00000016226	Rpp40	98	47.987	ENSAMXG00000001755	rpp40	99	47.619	Astyanax_mexicanus
ENSRNOG00000016226	Rpp40	100	83.196	ENSBTAG00000003332	RPP40	100	83.196	Bos_taurus
ENSRNOG00000016226	Rpp40	100	82.838	ENSCJAG00000021373	RPP40	100	82.094	Callithrix_jacchus
ENSRNOG00000016226	Rpp40	100	84.022	ENSCAFG00000009435	RPP40	100	84.022	Canis_familiaris
ENSRNOG00000016226	Rpp40	100	84.022	ENSCAFG00020013380	RPP40	100	84.022	Canis_lupus_dingo
ENSRNOG00000016226	Rpp40	100	82.920	ENSCHIG00000016849	RPP40	100	82.920	Capra_hircus
ENSRNOG00000016226	Rpp40	100	85.809	ENSTSYG00000032857	RPP40	100	85.809	Carlito_syrichta
ENSRNOG00000016226	Rpp40	100	77.558	ENSCAPG00000004957	RPP40	98	77.370	Cavia_aperea
ENSRNOG00000016226	Rpp40	100	83.747	ENSCPOG00000005855	RPP40	100	83.747	Cavia_porcellus
ENSRNOG00000016226	Rpp40	100	82.838	ENSCCAG00000019809	RPP40	100	82.094	Cebus_capucinus
ENSRNOG00000016226	Rpp40	100	83.498	ENSCATG00000038787	RPP40	100	83.471	Cercocebus_atys
ENSRNOG00000016226	Rpp40	100	83.196	ENSCLAG00000003235	RPP40	100	83.196	Chinchilla_lanigera
ENSRNOG00000016226	Rpp40	100	83.828	ENSCSAG00000007307	RPP40	100	83.747	Chlorocebus_sabaeus
ENSRNOG00000016226	Rpp40	83	66.000	ENSCHOG00000005856	-	100	66.000	Choloepus_hoffmanni
ENSRNOG00000016226	Rpp40	99	69.536	ENSCPBG00000009003	RPP40	99	68.056	Chrysemys_picta_bellii
ENSRNOG00000016226	Rpp40	100	84.158	ENSCANG00000033965	RPP40	100	84.022	Colobus_angolensis_palliatus
ENSRNOG00000016226	Rpp40	100	84.818	ENSCGRG00001018328	Rpp40	100	84.573	Cricetulus_griseus_chok1gshd
ENSRNOG00000016226	Rpp40	100	84.818	ENSCGRG00000011344	Rpp40	100	84.573	Cricetulus_griseus_crigri
ENSRNOG00000016226	Rpp40	98	35.674	ENSCSEG00000015006	-	98	35.754	Cynoglossus_semilaevis
ENSRNOG00000016226	Rpp40	89	34.050	ENSCVAG00000012169	rpp40	100	34.432	Cyprinodon_variegatus
ENSRNOG00000016226	Rpp40	99	49.025	ENSDARG00000017605	rpp40	99	49.025	Danio_rerio
ENSRNOG00000016226	Rpp40	82	80.808	ENSDNOG00000048136	RPP40	99	80.808	Dasypus_novemcinctus
ENSRNOG00000016226	Rpp40	100	82.508	ENSDORG00000029944	-	100	82.369	Dipodomys_ordii
ENSRNOG00000016226	Rpp40	100	62.466	ENSDORG00000011196	-	100	62.466	Dipodomys_ordii
ENSRNOG00000016226	Rpp40	100	66.116	ENSETEG00000007458	RPP40	100	66.116	Echinops_telfairi
ENSRNOG00000016226	Rpp40	99	44.667	ENSEBUG00000000386	rpp40	99	45.352	Eptatretus_burgeri
ENSRNOG00000016226	Rpp40	100	85.399	ENSEASG00005012116	RPP40	80	85.399	Equus_asinus_asinus
ENSRNOG00000016226	Rpp40	100	85.399	ENSECAG00000017247	RPP40	80	85.399	Equus_caballus
ENSRNOG00000016226	Rpp40	82	64.310	ENSEEUG00000012087	RPP40	100	64.310	Erinaceus_europaeus
ENSRNOG00000016226	Rpp40	98	49.833	ENSELUG00000017004	rpp40	99	48.883	Esox_lucius
ENSRNOG00000016226	Rpp40	100	83.747	ENSFCAG00000009249	RPP40	100	83.747	Felis_catus
ENSRNOG00000016226	Rpp40	99	64.557	ENSFALG00000013166	RPP40	100	63.303	Ficedula_albicollis
ENSRNOG00000016226	Rpp40	100	84.573	ENSFDAG00000013001	-	100	84.573	Fukomys_damarensis
ENSRNOG00000016226	Rpp40	96	68.493	ENSFDAG00000000265	-	99	68.493	Fukomys_damarensis
ENSRNOG00000016226	Rpp40	98	39.216	ENSFHEG00000021429	rpp40	88	39.216	Fundulus_heteroclitus
ENSRNOG00000016226	Rpp40	99	39.535	ENSGMOG00000018653	rpp40	100	39.130	Gadus_morhua
ENSRNOG00000016226	Rpp40	99	66.556	ENSGALG00000036074	RPP40	99	66.111	Gallus_gallus
ENSRNOG00000016226	Rpp40	98	34.899	ENSGAFG00000004189	-	98	34.899	Gambusia_affinis
ENSRNOG00000016226	Rpp40	98	38.936	ENSGACG00000002472	rpp40	99	38.936	Gasterosteus_aculeatus
ENSRNOG00000016226	Rpp40	99	70.199	ENSGAGG00000012918	RPP40	99	68.611	Gopherus_agassizii
ENSRNOG00000016226	Rpp40	100	83.498	ENSGGOG00000013764	RPP40	100	83.471	Gorilla_gorilla
ENSRNOG00000016226	Rpp40	98	39.597	ENSHBUG00000009378	rpp40	93	39.144	Haplochromis_burtoni
ENSRNOG00000016226	Rpp40	100	82.920	ENSHGLG00000004871	RPP40	100	82.920	Heterocephalus_glaber_female
ENSRNOG00000016226	Rpp40	100	83.196	ENSHGLG00100002080	RPP40	100	83.196	Heterocephalus_glaber_male
ENSRNOG00000016226	Rpp40	97	31.973	ENSHCOG00000013264	-	93	31.609	Hippocampus_comes
ENSRNOG00000016226	Rpp40	99	46.944	ENSIPUG00000008951	RPP40	99	46.944	Ictalurus_punctatus
ENSRNOG00000016226	Rpp40	100	84.022	ENSSTOG00000011199	RPP40	100	84.022	Ictidomys_tridecemlineatus
ENSRNOG00000016226	Rpp40	100	81.267	ENSJJAG00000020629	Rpp40	100	81.267	Jaculus_jaculus
ENSRNOG00000016226	Rpp40	98	37.584	ENSKMAG00000019358	rpp40	99	37.535	Kryptolebias_marmoratus
ENSRNOG00000016226	Rpp40	98	38.926	ENSLBEG00000022724	rpp40	99	39.216	Labrus_bergylta
ENSRNOG00000016226	Rpp40	99	59.444	ENSLACG00000014848	RPP40	99	59.444	Latimeria_chalumnae
ENSRNOG00000016226	Rpp40	100	54.270	ENSLOCG00000011650	rpp40	100	54.270	Lepisosteus_oculatus
ENSRNOG00000016226	Rpp40	100	80.858	ENSLAFG00000007530	RPP40	100	80.858	Loxodonta_africana
ENSRNOG00000016226	Rpp40	100	83.498	ENSMFAG00000043100	RPP40	100	83.471	Macaca_fascicularis
ENSRNOG00000016226	Rpp40	100	83.196	ENSMMUG00000004966	RPP40	100	83.196	Macaca_mulatta
ENSRNOG00000016226	Rpp40	100	83.828	ENSMNEG00000041986	RPP40	100	83.828	Macaca_nemestrina
ENSRNOG00000016226	Rpp40	100	73.267	ENSMLEG00000040851	RPP40	100	82.386	Mandrillus_leucophaeus
ENSRNOG00000016226	Rpp40	98	40.268	ENSMAMG00000019551	rpp40	98	40.056	Mastacembelus_armatus
ENSRNOG00000016226	Rpp40	99	39.889	ENSMZEG00005019475	rpp40	99	39.889	Maylandia_zebra
ENSRNOG00000016226	Rpp40	99	67.881	ENSMGAG00000004009	RPP40	99	62.778	Meleagris_gallopavo
ENSRNOG00000016226	Rpp40	100	87.603	ENSMAUG00000010268	Rpp40	100	87.603	Mesocricetus_auratus
ENSRNOG00000016226	Rpp40	100	84.573	ENSMICG00000003297	RPP40	100	79.063	Microcebus_murinus
ENSRNOG00000016226	Rpp40	100	90.358	ENSMOCG00000000305	Rpp40	100	90.358	Microtus_ochrogaster
ENSRNOG00000016226	Rpp40	98	33.333	ENSMMOG00000020591	-	99	33.333	Mola_mola
ENSRNOG00000016226	Rpp40	100	77.747	ENSMODG00000009826	RPP40	100	77.747	Monodelphis_domestica
ENSRNOG00000016226	Rpp40	98	40.268	ENSMALG00000020133	rpp40	99	39.776	Monopterus_albus
ENSRNOG00000016226	Rpp40	100	93.113	MGP_CAROLIEiJ_G0018429	Rpp40	100	93.113	Mus_caroli
ENSRNOG00000016226	Rpp40	100	93.664	ENSMUSG00000021418	Rpp40	100	93.664	Mus_musculus
ENSRNOG00000016226	Rpp40	100	92.837	MGP_PahariEiJ_G0019497	Rpp40	100	92.837	Mus_pahari
ENSRNOG00000016226	Rpp40	100	93.388	MGP_SPRETEiJ_G0019309	Rpp40	100	93.388	Mus_spretus
ENSRNOG00000016226	Rpp40	100	84.573	ENSMPUG00000000530	RPP40	93	84.573	Mustela_putorius_furo
ENSRNOG00000016226	Rpp40	100	83.471	ENSMLUG00000000501	RPP40	100	83.471	Myotis_lucifugus
ENSRNOG00000016226	Rpp40	95	77.168	ENSNGAG00000022529	-	100	77.168	Nannospalax_galili
ENSRNOG00000016226	Rpp40	100	87.129	ENSNGAG00000023955	-	100	87.052	Nannospalax_galili
ENSRNOG00000016226	Rpp40	98	36.093	ENSNBRG00000017465	rpp40	86	35.168	Neolamprologus_brichardi
ENSRNOG00000016226	Rpp40	100	82.369	ENSNLEG00000034397	RPP40	100	82.369	Nomascus_leucogenys
ENSRNOG00000016226	Rpp40	100	72.176	ENSMEUG00000005300	RPP40	100	72.176	Notamacropus_eugenii
ENSRNOG00000016226	Rpp40	100	74.587	ENSODEG00000006170	-	100	75.466	Octodon_degus
ENSRNOG00000016226	Rpp40	100	77.686	ENSODEG00000018153	-	100	77.686	Octodon_degus
ENSRNOG00000016226	Rpp40	100	81.818	ENSODEG00000007255	-	100	81.818	Octodon_degus
ENSRNOG00000016226	Rpp40	98	40.604	ENSONIG00000014016	rpp40	99	39.335	Oreochromis_niloticus
ENSRNOG00000016226	Rpp40	99	71.947	ENSOANG00000001200	RPP40	99	71.947	Ornithorhynchus_anatinus
ENSRNOG00000016226	Rpp40	99	77.667	ENSOCUG00000000354	RPP40	99	75.346	Oryctolagus_cuniculus
ENSRNOG00000016226	Rpp40	99	36.667	ENSORLG00000008242	-	100	36.667	Oryzias_latipes
ENSRNOG00000016226	Rpp40	99	36.667	ENSORLG00020013745	-	91	36.667	Oryzias_latipes_hni
ENSRNOG00000016226	Rpp40	99	36.944	ENSORLG00015000887	-	100	36.944	Oryzias_latipes_hsok
ENSRNOG00000016226	Rpp40	99	37.673	ENSOMEG00000002747	rpp40	100	37.673	Oryzias_melastigma
ENSRNOG00000016226	Rpp40	100	85.124	ENSOGAG00000006055	RPP40	100	85.124	Otolemur_garnettii
ENSRNOG00000016226	Rpp40	100	82.178	ENSOARG00000018783	RPP40	100	82.178	Ovis_aries
ENSRNOG00000016226	Rpp40	100	83.498	ENSPPAG00000023703	RPP40	100	83.196	Pan_paniscus
ENSRNOG00000016226	Rpp40	100	83.471	ENSPPRG00000005612	RPP40	100	83.471	Panthera_pardus
ENSRNOG00000016226	Rpp40	100	77.686	ENSPTIG00000018847	RPP40	100	77.686	Panthera_tigris_altaica
ENSRNOG00000016226	Rpp40	100	83.471	ENSPTRG00000017690	RPP40	100	83.471	Pan_troglodytes
ENSRNOG00000016226	Rpp40	100	84.158	ENSPANG00000017865	RPP40	100	83.747	Papio_anubis
ENSRNOG00000016226	Rpp40	98	50.838	ENSPKIG00000006311	rpp40	99	50.838	Paramormyrops_kingsleyae
ENSRNOG00000016226	Rpp40	73	69.820	ENSPSIG00000007854	RPP40	100	69.820	Pelodiscus_sinensis
ENSRNOG00000016226	Rpp40	96	82.534	ENSPEMG00000020809	Rpp40	91	77.745	Peromyscus_maniculatus_bairdii
ENSRNOG00000016226	Rpp40	90	47.080	ENSPMAG00000008412	rpp40	99	47.080	Petromyzon_marinus
ENSRNOG00000016226	Rpp40	100	76.584	ENSPCIG00000010682	RPP40	100	76.584	Phascolarctos_cinereus
ENSRNOG00000016226	Rpp40	98	35.333	ENSPFOG00000011460	rpp40	98	35.097	Poecilia_formosa
ENSRNOG00000016226	Rpp40	98	35.294	ENSPLAG00000001334	rpp40	99	35.294	Poecilia_latipinna
ENSRNOG00000016226	Rpp40	98	35.906	ENSPMEG00000007721	rpp40	99	35.574	Poecilia_mexicana
ENSRNOG00000016226	Rpp40	98	36.415	ENSPREG00000009215	rpp40	99	36.415	Poecilia_reticulata
ENSRNOG00000016226	Rpp40	100	83.828	ENSPPYG00000016194	RPP40	100	83.747	Pongo_abelii
ENSRNOG00000016226	Rpp40	51	83.696	ENSPCAG00000002700	-	99	83.696	Procavia_capensis
ENSRNOG00000016226	Rpp40	100	85.675	ENSPCOG00000003907	RPP40	100	85.675	Propithecus_coquereli
ENSRNOG00000016226	Rpp40	100	84.298	ENSPVAG00000011325	RPP40	100	84.298	Pteropus_vampyrus
ENSRNOG00000016226	Rpp40	98	39.262	ENSPNYG00000004432	rpp40	98	39.262	Pundamilia_nyererei
ENSRNOG00000016226	Rpp40	98	47.157	ENSPNAG00000019125	rpp40	99	45.810	Pygocentrus_nattereri
ENSRNOG00000016226	Rpp40	100	84.158	ENSRBIG00000035800	RPP40	100	84.158	Rhinopithecus_bieti
ENSRNOG00000016226	Rpp40	100	84.158	ENSRROG00000039116	RPP40	100	84.022	Rhinopithecus_roxellana
ENSRNOG00000016226	Rpp40	100	82.838	ENSSBOG00000020297	RPP40	100	82.094	Saimiri_boliviensis_boliviensis
ENSRNOG00000016226	Rpp40	92	75.899	ENSSHAG00000002102	RPP40	100	75.899	Sarcophilus_harrisii
ENSRNOG00000016226	Rpp40	98	50.836	ENSSFOG00015001142	rpp40	81	49.587	Scleropages_formosus
ENSRNOG00000016226	Rpp40	98	38.655	ENSSDUG00000007202	rpp40	99	38.655	Seriola_dumerili
ENSRNOG00000016226	Rpp40	98	38.936	ENSSLDG00000017563	rpp40	99	38.936	Seriola_lalandi_dorsalis
ENSRNOG00000016226	Rpp40	97	66.441	ENSSPUG00000018950	-	100	66.441	Sphenodon_punctatus
ENSRNOG00000016226	Rpp40	99	68.212	ENSSPUG00000017487	-	99	66.944	Sphenodon_punctatus
ENSRNOG00000016226	Rpp40	98	39.394	ENSSPAG00000022716	rpp40	99	38.375	Stegastes_partitus
ENSRNOG00000016226	Rpp40	100	80.165	ENSSSCG00000000998	RPP40	100	80.165	Sus_scrofa
ENSRNOG00000016226	Rpp40	99	68.212	ENSTGUG00000002258	-	100	65.922	Taeniopygia_guttata
ENSRNOG00000016226	Rpp40	58	69.492	ENSTGUG00000015246	-	100	69.492	Taeniopygia_guttata
ENSRNOG00000016226	Rpp40	98	41.275	ENSTRUG00000003755	rpp40	99	40.336	Takifugu_rubripes
ENSRNOG00000016226	Rpp40	99	38.056	ENSTNIG00000003077	rpp40	99	38.056	Tetraodon_nigroviridis
ENSRNOG00000016226	Rpp40	83	59.200	ENSTBEG00000014467	-	73	59.200	Tupaia_belangeri
ENSRNOG00000016226	Rpp40	99	76.796	ENSTTRG00000007319	RPP40	100	76.796	Tursiops_truncatus
ENSRNOG00000016226	Rpp40	100	85.124	ENSUAMG00000002159	RPP40	100	85.124	Ursus_americanus
ENSRNOG00000016226	Rpp40	100	85.124	ENSUMAG00000018639	RPP40	94	85.124	Ursus_maritimus
ENSRNOG00000016226	Rpp40	81	61.224	ENSVPAG00000004652	-	99	61.224	Vicugna_pacos
ENSRNOG00000016226	Rpp40	100	83.471	ENSVVUG00000005451	RPP40	100	83.471	Vulpes_vulpes
ENSRNOG00000016226	Rpp40	98	58.054	ENSXETG00000017617	rpp40	100	55.342	Xenopus_tropicalis
ENSRNOG00000016226	Rpp40	54	54.321	ENSXCOG00000019991	-	69	43.046	Xiphophorus_couchianus
ENSRNOG00000016226	Rpp40	99	32.320	ENSXMAG00000024940	rpp40	98	31.653	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0004526	ribonuclease P activity	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process