EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000016465 (Gene tree)
Gene ID: 362976
Gene Symbol: Trmu
Alias: LOC362976|Trmt1
Full Name: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 16599 bases
Position: chr7:126756151-126772749
Accession: 1311229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000022511	tRNA_Me_trans	PF03054.16	5.8e-141	1	1
ENSRNOP00000061254	tRNA_Me_trans	PF03054.16	1.5e-135	1	2
ENSRNOP00000061254	tRNA_Me_trans	PF03054.16	1.5e-135	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000022511	-	1566	XM_008765766	ENSRNOP00000022511	417 (aa)	-	D3ZLU4
ENSRNOT00000065283	-	1609	XM_006242164	ENSRNOP00000061254	441 (aa)	XP_006242226	B1WC37

Gene Model

Click here to download ENSRNOG00000016465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000016465's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000016465	Trmu	99	89.737	ENSG00000100416	TRMU	100	93.333	Homo_sapiens
ENSRNOG00000016465	Trmu	100	67.866	ENSAPOG00000014458	trmu	100	67.866	Acanthochromis_polyacanthus
ENSRNOG00000016465	Trmu	99	89.904	ENSAMEG00000003319	TRMU	99	89.904	Ailuropoda_melanoleuca
ENSRNOG00000016465	Trmu	97	67.494	ENSACIG00000002101	trmu	97	67.494	Amphilophus_citrinellus
ENSRNOG00000016465	Trmu	100	68.345	ENSAOCG00000013155	trmu	100	68.345	Amphiprion_ocellaris
ENSRNOG00000016465	Trmu	100	67.866	ENSAPEG00000013350	trmu	100	67.866	Amphiprion_percula
ENSRNOG00000016465	Trmu	100	67.146	ENSATEG00000007814	trmu	100	67.146	Anabas_testudineus
ENSRNOG00000016465	Trmu	92	78.590	ENSAPLG00000016380	TRMU	98	78.590	Anas_platyrhynchos
ENSRNOG00000016465	Trmu	100	76.499	ENSACAG00000007720	TRMU	100	76.499	Anolis_carolinensis
ENSRNOG00000016465	Trmu	99	88.564	ENSANAG00000038053	TRMU	97	88.564	Aotus_nancymaae
ENSRNOG00000016465	Trmu	97	68.983	ENSACLG00000005395	trmu	98	68.835	Astatotilapia_calliptera
ENSRNOG00000016465	Trmu	97	70.343	ENSAMXG00000005282	trmu	99	70.343	Astyanax_mexicanus
ENSRNOG00000016465	Trmu	99	88.221	ENSBTAG00000005595	TRMU	99	88.221	Bos_taurus
ENSRNOG00000016465	Trmu	91	39.948	WBGene00007114	mttu-1	98	39.948	Caenorhabditis_elegans
ENSRNOG00000016465	Trmu	99	86.988	ENSCJAG00000000198	TRMU	99	86.988	Callithrix_jacchus
ENSRNOG00000016465	Trmu	99	91.241	ENSCAFG00000000779	TRMU	98	90.408	Canis_familiaris
ENSRNOG00000016465	Trmu	99	91.241	ENSCAFG00020009184	TRMU	98	90.408	Canis_lupus_dingo
ENSRNOG00000016465	Trmu	100	89.448	ENSCHIG00000017074	TRMU	100	89.448	Capra_hircus
ENSRNOG00000016465	Trmu	99	88.462	ENSTSYG00000003853	TRMU	99	88.462	Carlito_syrichta
ENSRNOG00000016465	Trmu	96	83.294	ENSCAPG00000013034	TRMU	98	83.294	Cavia_aperea
ENSRNOG00000016465	Trmu	99	88.193	ENSCPOG00000020780	TRMU	99	88.193	Cavia_porcellus
ENSRNOG00000016465	Trmu	99	87.857	ENSCCAG00000021641	TRMU	99	87.857	Cebus_capucinus
ENSRNOG00000016465	Trmu	99	87.828	ENSCATG00000032800	TRMU	99	87.828	Cercocebus_atys
ENSRNOG00000016465	Trmu	99	90.238	ENSCLAG00000017269	TRMU	99	90.238	Chinchilla_lanigera
ENSRNOG00000016465	Trmu	99	88.544	ENSCSAG00000005279	TRMU	99	88.544	Chlorocebus_sabaeus
ENSRNOG00000016465	Trmu	90	79.947	ENSCPBG00000011621	TRMU	94	79.947	Chrysemys_picta_bellii
ENSRNOG00000016465	Trmu	94	46.565	ENSCING00000019371	-	96	46.565	Ciona_intestinalis
ENSRNOG00000016465	Trmu	99	88.067	ENSCANG00000041645	TRMU	99	88.067	Colobus_angolensis_palliatus
ENSRNOG00000016465	Trmu	99	96.394	ENSCGRG00001001739	Trmu	99	96.394	Cricetulus_griseus_chok1gshd
ENSRNOG00000016465	Trmu	99	88.702	ENSCGRG00000002781	Trmu	99	88.702	Cricetulus_griseus_crigri
ENSRNOG00000016465	Trmu	99	66.346	ENSCSEG00000012382	trmu	99	66.346	Cynoglossus_semilaevis
ENSRNOG00000016465	Trmu	100	68.106	ENSCVAG00000001366	trmu	100	68.106	Cyprinodon_variegatus
ENSRNOG00000016465	Trmu	99	66.024	ENSDARG00000043734	trmu	99	66.024	Danio_rerio
ENSRNOG00000016465	Trmu	54	84.141	ENSDNOG00000047245	-	84	80.833	Dasypus_novemcinctus
ENSRNOG00000016465	Trmu	99	87.591	ENSDORG00000007455	Trmu	100	87.591	Dipodomys_ordii
ENSRNOG00000016465	Trmu	89	42.359	FBgn0040337	CG3021	98	39.858	Drosophila_melanogaster
ENSRNOG00000016465	Trmu	95	53.731	ENSEBUG00000007454	trmu	99	53.731	Eptatretus_burgeri
ENSRNOG00000016465	Trmu	98	89.976	ENSEASG00005021725	TRMU	99	89.209	Equus_asinus_asinus
ENSRNOG00000016465	Trmu	98	89.976	ENSECAG00000000467	TRMU	99	89.209	Equus_caballus
ENSRNOG00000016465	Trmu	71	69.463	ENSEEUG00000000074	-	78	88.889	Erinaceus_europaeus
ENSRNOG00000016465	Trmu	99	65.049	ENSELUG00000009464	trmu	99	66.304	Esox_lucius
ENSRNOG00000016465	Trmu	98	90.220	ENSFCAG00000006533	TRMU	99	89.639	Felis_catus
ENSRNOG00000016465	Trmu	89	78.421	ENSFALG00000010035	TRMU	96	78.421	Ficedula_albicollis
ENSRNOG00000016465	Trmu	93	88.889	ENSFDAG00000017472	TRMU	98	88.889	Fukomys_damarensis
ENSRNOG00000016465	Trmu	100	68.585	ENSFHEG00000003162	trmu	100	68.585	Fundulus_heteroclitus
ENSRNOG00000016465	Trmu	97	62.162	ENSGMOG00000001323	trmu	100	62.162	Gadus_morhua
ENSRNOG00000016465	Trmu	96	78.133	ENSGALG00000031922	TRMU	96	78.133	Gallus_gallus
ENSRNOG00000016465	Trmu	96	70.927	ENSGAFG00000013331	trmu	96	70.927	Gambusia_affinis
ENSRNOG00000016465	Trmu	99	65.155	ENSGACG00000019024	trmu	99	65.155	Gasterosteus_aculeatus
ENSRNOG00000016465	Trmu	99	89.260	ENSGGOG00000000203	TRMU	99	89.260	Gorilla_gorilla
ENSRNOG00000016465	Trmu	97	68.486	ENSHBUG00000023421	trmu	98	68.293	Haplochromis_burtoni
ENSRNOG00000016465	Trmu	99	88.462	ENSHGLG00000009278	TRMU	99	88.462	Heterocephalus_glaber_female
ENSRNOG00000016465	Trmu	99	88.462	ENSHGLG00100018863	TRMU	99	88.462	Heterocephalus_glaber_male
ENSRNOG00000016465	Trmu	95	70.529	ENSHCOG00000013459	trmu	96	70.529	Hippocampus_comes
ENSRNOG00000016465	Trmu	98	67.647	ENSIPUG00000009785	trmu	100	67.647	Ictalurus_punctatus
ENSRNOG00000016465	Trmu	99	91.325	ENSSTOG00000010993	TRMU	99	91.325	Ictidomys_tridecemlineatus
ENSRNOG00000016465	Trmu	99	92.067	ENSJJAG00000000667	Trmu	99	92.067	Jaculus_jaculus
ENSRNOG00000016465	Trmu	100	67.386	ENSKMAG00000008516	trmu	100	67.386	Kryptolebias_marmoratus
ENSRNOG00000016465	Trmu	97	67.901	ENSLBEG00000018831	trmu	97	67.901	Labrus_bergylta
ENSRNOG00000016465	Trmu	97	72.906	ENSLACG00000013713	TRMU	97	72.906	Latimeria_chalumnae
ENSRNOG00000016465	Trmu	96	72.682	ENSLOCG00000016066	trmu	95	72.682	Lepisosteus_oculatus
ENSRNOG00000016465	Trmu	99	75.359	ENSLAFG00000005129	TRMU	99	75.359	Loxodonta_africana
ENSRNOG00000016465	Trmu	99	88.544	ENSMFAG00000039767	TRMU	99	88.544	Macaca_fascicularis
ENSRNOG00000016465	Trmu	99	88.544	ENSMMUG00000000807	TRMU	99	88.544	Macaca_mulatta
ENSRNOG00000016465	Trmu	99	88.544	ENSMNEG00000028164	TRMU	99	88.544	Macaca_nemestrina
ENSRNOG00000016465	Trmu	99	88.067	ENSMLEG00000033884	TRMU	99	88.067	Mandrillus_leucophaeus
ENSRNOG00000016465	Trmu	99	68.204	ENSMAMG00000004717	trmu	99	68.204	Mastacembelus_armatus
ENSRNOG00000016465	Trmu	97	68.983	ENSMZEG00005015797	trmu	97	68.983	Maylandia_zebra
ENSRNOG00000016465	Trmu	76	76.687	ENSMGAG00000007550	TRMU	95	76.687	Meleagris_gallopavo
ENSRNOG00000016465	Trmu	99	96.394	ENSMAUG00000022282	Trmu	99	96.394	Mesocricetus_auratus
ENSRNOG00000016465	Trmu	99	90.073	ENSMICG00000029046	TRMU	100	90.073	Microcebus_murinus
ENSRNOG00000016465	Trmu	99	95.673	ENSMOCG00000014641	Trmu	99	95.673	Microtus_ochrogaster
ENSRNOG00000016465	Trmu	97	68.734	ENSMMOG00000007229	trmu	97	68.734	Mola_mola
ENSRNOG00000016465	Trmu	99	77.778	ENSMODG00000007433	TRMU	96	77.778	Monodelphis_domestica
ENSRNOG00000016465	Trmu	98	65.865	ENSMALG00000007721	trmu	100	65.865	Monopterus_albus
ENSRNOG00000016465	Trmu	100	96.643	MGP_CAROLIEiJ_G0020134	Trmu	100	96.643	Mus_caroli
ENSRNOG00000016465	Trmu	100	97.602	ENSMUSG00000022386	Trmu	100	97.602	Mus_musculus
ENSRNOG00000016465	Trmu	100	97.362	MGP_PahariEiJ_G0020139	Trmu	100	97.362	Mus_pahari
ENSRNOG00000016465	Trmu	100	97.602	MGP_SPRETEiJ_G0021031	Trmu	100	97.602	Mus_spretus
ENSRNOG00000016465	Trmu	99	89.157	ENSMPUG00000002523	TRMU	99	89.157	Mustela_putorius_furo
ENSRNOG00000016465	Trmu	99	92.771	ENSNGAG00000005132	Trmu	99	92.771	Nannospalax_galili
ENSRNOG00000016465	Trmu	97	68.734	ENSNBRG00000022690	trmu	99	68.642	Neolamprologus_brichardi
ENSRNOG00000016465	Trmu	99	87.828	ENSNLEG00000015773	TRMU	99	87.828	Nomascus_leucogenys
ENSRNOG00000016465	Trmu	79	70.122	ENSMEUG00000000216	TRMU	99	70.122	Notamacropus_eugenii
ENSRNOG00000016465	Trmu	99	88.995	ENSODEG00000014745	TRMU	99	88.995	Octodon_degus
ENSRNOG00000016465	Trmu	97	68.734	ENSONIG00000009821	trmu	97	68.734	Oreochromis_niloticus
ENSRNOG00000016465	Trmu	92	76.623	ENSOANG00000001891	TRMU	97	76.623	Ornithorhynchus_anatinus
ENSRNOG00000016465	Trmu	93	89.974	ENSOCUG00000003664	TRMU	97	88.206	Oryctolagus_cuniculus
ENSRNOG00000016465	Trmu	98	66.586	ENSORLG00000019015	trmu	99	66.586	Oryzias_latipes
ENSRNOG00000016465	Trmu	98	66.344	ENSORLG00020006830	trmu	99	66.344	Oryzias_latipes_hni
ENSRNOG00000016465	Trmu	98	66.344	ENSORLG00015003907	trmu	99	66.344	Oryzias_latipes_hsok
ENSRNOG00000016465	Trmu	58	63.750	ENSOMEG00000015541	trmu	86	63.750	Oryzias_melastigma
ENSRNOG00000016465	Trmu	99	88.462	ENSOGAG00000008096	TRMU	99	88.462	Otolemur_garnettii
ENSRNOG00000016465	Trmu	100	80.336	ENSOARG00000019475	TRMU	100	80.336	Ovis_aries
ENSRNOG00000016465	Trmu	99	89.260	ENSPPAG00000033944	TRMU	99	89.260	Pan_paniscus
ENSRNOG00000016465	Trmu	97	90.864	ENSPPRG00000004197	TRMU	99	89.880	Panthera_pardus
ENSRNOG00000016465	Trmu	64	90.602	ENSPTIG00000014122	TRMU	98	90.602	Panthera_tigris_altaica
ENSRNOG00000016465	Trmu	99	89.260	ENSPTRG00000014510	TRMU	99	89.260	Pan_troglodytes
ENSRNOG00000016465	Trmu	95	90.886	ENSPANG00000023074	TRMU	96	88.089	Papio_anubis
ENSRNOG00000016465	Trmu	98	67.391	ENSPKIG00000002849	trmu	100	67.391	Paramormyrops_kingsleyae
ENSRNOG00000016465	Trmu	90	79.144	ENSPSIG00000013020	TRMU	98	79.144	Pelodiscus_sinensis
ENSRNOG00000016465	Trmu	98	68.537	ENSPMGG00000004083	trmu	99	68.537	Periophthalmus_magnuspinnatus
ENSRNOG00000016465	Trmu	99	96.394	ENSPEMG00000014007	Trmu	99	96.394	Peromyscus_maniculatus_bairdii
ENSRNOG00000016465	Trmu	96	78.697	ENSPCIG00000009923	TRMU	97	77.108	Phascolarctos_cinereus
ENSRNOG00000016465	Trmu	95	67.839	ENSPFOG00000008197	trmu	89	67.839	Poecilia_formosa
ENSRNOG00000016465	Trmu	99	69.830	ENSPLAG00000008414	trmu	99	69.830	Poecilia_latipinna
ENSRNOG00000016465	Trmu	100	69.544	ENSPMEG00000004326	trmu	100	69.544	Poecilia_mexicana
ENSRNOG00000016465	Trmu	99	69.830	ENSPREG00000007980	trmu	99	69.830	Poecilia_reticulata
ENSRNOG00000016465	Trmu	99	89.260	ENSPPYG00000011949	TRMU	99	89.260	Pongo_abelii
ENSRNOG00000016465	Trmu	93	78.866	ENSPCAG00000013462	TRMU	99	78.866	Procavia_capensis
ENSRNOG00000016465	Trmu	99	89.663	ENSPCOG00000016539	TRMU	99	89.663	Propithecus_coquereli
ENSRNOG00000016465	Trmu	97	80.494	ENSPVAG00000013202	TRMU	99	79.567	Pteropus_vampyrus
ENSRNOG00000016465	Trmu	97	68.486	ENSPNYG00000005629	trmu	97	68.486	Pundamilia_nyererei
ENSRNOG00000016465	Trmu	98	68.293	ENSPNAG00000006339	trmu	96	68.293	Pygocentrus_nattereri
ENSRNOG00000016465	Trmu	99	87.828	ENSRBIG00000038973	TRMU	99	87.828	Rhinopithecus_bieti
ENSRNOG00000016465	Trmu	99	88.067	ENSRROG00000004267	TRMU	99	88.067	Rhinopithecus_roxellana
ENSRNOG00000016465	Trmu	91	30.923	YDL033C	SLM3	91	30.923	Saccharomyces_cerevisiae
ENSRNOG00000016465	Trmu	99	88.675	ENSSBOG00000030184	TRMU	99	88.675	Saimiri_boliviensis_boliviensis
ENSRNOG00000016465	Trmu	90	67.647	ENSSFOG00015020664	trmu	98	67.647	Scleropages_formosus
ENSRNOG00000016465	Trmu	96	68.421	ENSSMAG00000019450	trmu	96	68.421	Scophthalmus_maximus
ENSRNOG00000016465	Trmu	100	68.585	ENSSDUG00000011913	trmu	100	68.585	Seriola_dumerili
ENSRNOG00000016465	Trmu	100	68.825	ENSSLDG00000011684	trmu	100	68.825	Seriola_lalandi_dorsalis
ENSRNOG00000016465	Trmu	99	66.906	ENSSPUG00000017123	TRMU	98	79.167	Sphenodon_punctatus
ENSRNOG00000016465	Trmu	100	68.345	ENSSPAG00000021875	trmu	100	68.345	Stegastes_partitus
ENSRNOG00000016465	Trmu	98	88.971	ENSSSCG00000000007	TRMU	99	87.619	Sus_scrofa
ENSRNOG00000016465	Trmu	89	79.088	ENSTGUG00000003663	-	100	79.088	Taeniopygia_guttata
ENSRNOG00000016465	Trmu	97	69.975	ENSTRUG00000001231	trmu	98	69.975	Takifugu_rubripes
ENSRNOG00000016465	Trmu	97	70.123	ENSTNIG00000010484	trmu	96	70.123	Tetraodon_nigroviridis
ENSRNOG00000016465	Trmu	93	54.522	ENSTBEG00000011276	-	99	54.522	Tupaia_belangeri
ENSRNOG00000016465	Trmu	99	89.048	ENSTTRG00000004160	TRMU	99	89.048	Tursiops_truncatus
ENSRNOG00000016465	Trmu	70	91.065	ENSUAMG00000024825	TRMU	97	91.065	Ursus_americanus
ENSRNOG00000016465	Trmu	98	75.366	ENSUMAG00000019079	TRMU	97	90.661	Ursus_maritimus
ENSRNOG00000016465	Trmu	53	77.169	ENSVPAG00000000685	-	100	77.169	Vicugna_pacos
ENSRNOG00000016465	Trmu	99	90.120	ENSVVUG00000024963	TRMU	99	90.120	Vulpes_vulpes
ENSRNOG00000016465	Trmu	98	72.506	ENSXETG00000023304	trmu	96	72.506	Xenopus_tropicalis
ENSRNOG00000016465	Trmu	96	68.812	ENSXCOG00000015105	trmu	96	68.812	Xiphophorus_couchianus
ENSRNOG00000016465	Trmu	96	70.927	ENSXMAG00000006697	trmu	96	70.927	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	-	IEA	Function
GO:0002143	tRNA wobble position uridine thiolation	21873635.	IBA	Process
GO:0005524	ATP binding	-	IEA	Function
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016783	sulfurtransferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process