EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000016733 (Gene tree)
Gene ID: 81756
Gene Symbol: Rab13
Alias: -
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 4695 bases
Position: chr2:189581644-189586338
Accession: 620880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000071741	MMR_HSR1	PF01926.23	6.2e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000092112	-	760	-	ENSRNOP00000071741	203 (aa)	-	P35286
ENSRNOT00000022627	-	857	-	ENSRNOP00000022626	164 (aa)	-	A0A0H2UHN5

Gene Model

Click here to download ENSRNOG00000016733's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000016733's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000016733	Rab13	91	41.081	ENSRNOG00000023640	Rab25	86	41.081
ENSRNOG00000016733	Rab13	91	52.973	ENSRNOG00000050510	LOC102555167	92	52.973
ENSRNOG00000016733	Rab13	95	37.500	ENSRNOG00000030443	Rab9a	97	37.500
ENSRNOG00000016733	Rab13	85	30.337	ENSRNOG00000050578	Rheb	94	30.337
ENSRNOG00000016733	Rab13	78	30.818	ENSRNOG00000013947	Rabl2	62	30.818
ENSRNOG00000016733	Rab13	79	39.506	ENSRNOG00000009338	Kras	85	39.506
ENSRNOG00000016733	Rab13	79	38.889	ENSRNOG00000016611	Hras	85	38.889
ENSRNOG00000016733	Rab13	86	43.182	ENSRNOG00000018972	Rab18	85	43.182
ENSRNOG00000016733	Rab13	84	54.118	ENSRNOG00000007364	Rab15	80	54.118
ENSRNOG00000016733	Rab13	86	37.017	ENSRNOG00000042189	Rab31	93	37.017
ENSRNOG00000016733	Rab13	95	37.500	ENSRNOG00000018568	Rab5c	89	37.500
ENSRNOG00000016733	Rab13	80	41.071	ENSRNOG00000047960	Rab9b	83	41.071
ENSRNOG00000016733	Rab13	57	30.508	ENSRNOG00000020770	Arl4d	58	30.508
ENSRNOG00000016733	Rab13	90	41.053	ENSRNOG00000018901	Rab14	88	41.053
ENSRNOG00000016733	Rab13	79	51.534	ENSRNOG00000019295	Rab12	67	51.534
ENSRNOG00000016733	Rab13	80	50.000	ENSRNOG00000010224	Rab30	80	50.000
ENSRNOG00000016733	Rab13	80	37.126	ENSRNOG00000012247	Rab7a	89	37.126
ENSRNOG00000016733	Rab13	78	40.741	ENSRNOG00000001311	Rab36	61	40.741
ENSRNOG00000016733	Rab13	81	46.667	ENSRNOG00000011302	Rab11a	76	46.667
ENSRNOG00000016733	Rab13	83	41.379	ENSRNOG00000013035	Rab33b	76	41.379
ENSRNOG00000016733	Rab13	79	36.810	ENSRNOG00000014060	Mras	78	36.810
ENSRNOG00000016733	Rab13	84	54.706	ENSRNOG00000022014	Rab35	84	54.706
ENSRNOG00000016733	Rab13	95	36.408	ENSRNOG00000023375	Rab34	81	36.408
ENSRNOG00000016733	Rab13	81	39.394	ENSRNOG00000012629	Rab23	69	39.394
ENSRNOG00000016733	Rab13	81	47.879	ENSRNOG00000007648	Rab11b	76	47.879
ENSRNOG00000016733	Rab13	95	39.086	ENSRNOG00000018176	Rab6a	93	39.086
ENSRNOG00000016733	Rab13	79	37.654	ENSRNOG00000023079	Nras	85	37.654
ENSRNOG00000016733	Rab13	95	36.458	ENSRNOG00000006130	Rab5b	89	36.458
ENSRNOG00000016733	Rab13	96	38.974	ENSRNOG00000009198	Rab6b	92	38.974
ENSRNOG00000016733	Rab13	84	37.427	ENSRNOG00000005762	Rab22a	88	37.427
ENSRNOG00000016733	Rab13	81	46.951	ENSRNOG00000005963	Rab2a	80	46.951
ENSRNOG00000016733	Rab13	62	30.952	ENSRNOG00000019973	Arl3	65	30.952
ENSRNOG00000016733	Rab13	97	51.777	ENSRNOG00000004992	Rab1a	96	51.777
ENSRNOG00000016733	Rab13	81	48.485	ENSRNOG00000012488	Rab2b	77	48.485
ENSRNOG00000016733	Rab13	85	42.623	ENSRNOG00000006698	Rab33a	77	42.623
ENSRNOG00000016733	Rab13	88	30.270	ENSRNOG00000003988	Dnajc27	68	30.270

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000016733	Rab13	100	92.611	ENSG00000143545	RAB13	100	92.611	Homo_sapiens
ENSRNOG00000016733	Rab13	87	80.791	ENSACIG00000008584	rab13	85	80.791	Amphilophus_citrinellus
ENSRNOG00000016733	Rab13	100	92.611	ENSANAG00000030247	-	100	92.611	Aotus_nancymaae
ENSRNOG00000016733	Rab13	99	77.723	ENSAMXG00000030712	rab13	99	77.723	Astyanax_mexicanus
ENSRNOG00000016733	Rab13	100	91.133	ENSBTAG00000017604	RAB13	100	91.133	Bos_taurus
ENSRNOG00000016733	Rab13	80	46.012	WBGene00019317	K02E10.1	75	46.012	Caenorhabditis_elegans
ENSRNOG00000016733	Rab13	100	92.118	ENSCJAG00000009933	-	100	92.118	Callithrix_jacchus
ENSRNOG00000016733	Rab13	100	91.133	ENSCHIG00000022271	-	100	91.133	Capra_hircus
ENSRNOG00000016733	Rab13	99	88.119	ENSCPOG00000011491	-	99	88.119	Cavia_porcellus
ENSRNOG00000016733	Rab13	100	92.611	ENSCCAG00000028502	-	100	92.611	Cebus_capucinus
ENSRNOG00000016733	Rab13	100	92.611	ENSCATG00000041779	-	100	92.611	Cercocebus_atys
ENSRNOG00000016733	Rab13	100	87.192	ENSCLAG00000006603	-	100	87.192	Chinchilla_lanigera
ENSRNOG00000016733	Rab13	100	92.611	ENSCANG00000036573	-	100	92.611	Colobus_angolensis_palliatus
ENSRNOG00000016733	Rab13	100	94.089	ENSCGRG00001021505	Rab13	100	94.089	Cricetulus_griseus_chok1gshd
ENSRNOG00000016733	Rab13	100	94.089	ENSCGRG00000012126	Rab13	100	94.089	Cricetulus_griseus_crigri
ENSRNOG00000016733	Rab13	99	76.471	ENSCSEG00000002358	rab13	99	76.471	Cynoglossus_semilaevis
ENSRNOG00000016733	Rab13	99	77.941	ENSDARG00000034771	rab13	99	77.941	Danio_rerio
ENSRNOG00000016733	Rab13	100	91.626	ENSDORG00000001591	Rab13	100	91.626	Dipodomys_ordii
ENSRNOG00000016733	Rab13	100	92.118	ENSEASG00005000683	-	100	92.118	Equus_asinus_asinus
ENSRNOG00000016733	Rab13	100	92.118	ENSECAG00000016551	RAB13	100	92.118	Equus_caballus
ENSRNOG00000016733	Rab13	99	87.624	ENSEEUG00000001233	-	99	87.624	Erinaceus_europaeus
ENSRNOG00000016733	Rab13	99	75.610	ENSELUG00000012801	rab13	99	75.610	Esox_lucius
ENSRNOG00000016733	Rab13	100	88.670	ENSFCAG00000045269	-	100	88.670	Felis_catus
ENSRNOG00000016733	Rab13	65	96.212	ENSFDAG00000014469	-	100	96.212	Fukomys_damarensis
ENSRNOG00000016733	Rab13	99	74.020	ENSFHEG00000021221	rab13	99	80.220	Fundulus_heteroclitus
ENSRNOG00000016733	Rab13	99	75.490	ENSGACG00000011925	rab13	99	75.490	Gasterosteus_aculeatus
ENSRNOG00000016733	Rab13	85	91.329	ENSGAGG00000000742	-	99	83.168	Gopherus_agassizii
ENSRNOG00000016733	Rab13	100	92.611	ENSGGOG00000023693	RAB13	100	92.611	Gorilla_gorilla
ENSRNOG00000016733	Rab13	100	87.192	ENSHGLG00000008749	RAB13	100	87.192	Heterocephalus_glaber_female
ENSRNOG00000016733	Rab13	100	87.192	ENSHGLG00100013608	RAB13	100	87.192	Heterocephalus_glaber_male
ENSRNOG00000016733	Rab13	99	72.549	ENSHCOG00000007440	rab13	95	84.971	Hippocampus_comes
ENSRNOG00000016733	Rab13	99	74.634	ENSIPUG00000003199	rab13	99	74.634	Ictalurus_punctatus
ENSRNOG00000016733	Rab13	100	92.611	ENSSTOG00000011222	-	100	92.611	Ictidomys_tridecemlineatus
ENSRNOG00000016733	Rab13	100	88.177	ENSJJAG00000010575	Rab13	100	88.177	Jaculus_jaculus
ENSRNOG00000016733	Rab13	99	74.510	ENSKMAG00000001908	rab13	99	74.510	Kryptolebias_marmoratus
ENSRNOG00000016733	Rab13	99	75.248	ENSLBEG00000026779	rab13	99	75.248	Labrus_bergylta
ENSRNOG00000016733	Rab13	85	78.488	ENSLACG00000008103	-	97	78.488	Latimeria_chalumnae
ENSRNOG00000016733	Rab13	100	92.611	ENSMFAG00000041018	RAB13	100	92.611	Macaca_fascicularis
ENSRNOG00000016733	Rab13	100	92.611	ENSMNEG00000028951	-	100	92.611	Macaca_nemestrina
ENSRNOG00000016733	Rab13	100	92.611	ENSMLEG00000042247	-	100	92.611	Mandrillus_leucophaeus
ENSRNOG00000016733	Rab13	99	74.510	ENSMAMG00000014602	rab13	99	74.510	Mastacembelus_armatus
ENSRNOG00000016733	Rab13	100	93.596	ENSMAUG00000015713	Rab13	100	93.596	Mesocricetus_auratus
ENSRNOG00000016733	Rab13	100	90.148	ENSMICG00000010340	-	100	90.148	Microcebus_murinus
ENSRNOG00000016733	Rab13	100	94.581	ENSMOCG00000021448	Rab13	100	94.581	Microtus_ochrogaster
ENSRNOG00000016733	Rab13	99	89.604	ENSMODG00000017295	-	84	89.604	Monodelphis_domestica
ENSRNOG00000016733	Rab13	100	96.059	MGP_CAROLIEiJ_G0025227	Rab13	100	96.059	Mus_caroli
ENSRNOG00000016733	Rab13	100	95.074	ENSMUSG00000027935	Rab13	100	95.074	Mus_musculus
ENSRNOG00000016733	Rab13	99	95.545	MGP_PahariEiJ_G0026671	Rab13	99	95.545	Mus_pahari
ENSRNOG00000016733	Rab13	100	92.611	ENSNGAG00000010309	Rab13	100	92.611	Nannospalax_galili
ENSRNOG00000016733	Rab13	99	74.752	ENSNBRG00000004124	rab13	99	74.752	Neolamprologus_brichardi
ENSRNOG00000016733	Rab13	100	92.611	ENSNLEG00000028944	-	100	92.611	Nomascus_leucogenys
ENSRNOG00000016733	Rab13	100	90.196	ENSMEUG00000009667	-	100	90.196	Notamacropus_eugenii
ENSRNOG00000016733	Rab13	63	96.850	ENSODEG00000012634	-	100	96.850	Octodon_degus
ENSRNOG00000016733	Rab13	100	87.192	ENSODEG00000010443	-	100	87.192	Octodon_degus
ENSRNOG00000016733	Rab13	99	75.743	ENSONIG00000006340	rab13	99	75.743	Oreochromis_niloticus
ENSRNOG00000016733	Rab13	88	93.820	ENSOCUG00000006286	-	100	93.820	Oryctolagus_cuniculus
ENSRNOG00000016733	Rab13	99	75.000	ENSOMEG00000008210	rab13	99	75.000	Oryzias_melastigma
ENSRNOG00000016733	Rab13	99	88.614	ENSOGAG00000016969	-	99	88.614	Otolemur_garnettii
ENSRNOG00000016733	Rab13	100	92.611	ENSPPAG00000028435	-	100	92.611	Pan_paniscus
ENSRNOG00000016733	Rab13	100	89.163	ENSPPRG00000008865	-	100	89.163	Panthera_pardus
ENSRNOG00000016733	Rab13	100	92.611	ENSPTRG00000001370	RAB13	100	92.611	Pan_troglodytes
ENSRNOG00000016733	Rab13	100	92.611	ENSPANG00000004479	-	100	92.611	Papio_anubis
ENSRNOG00000016733	Rab13	99	74.020	ENSPMGG00000007680	rab13	99	74.020	Periophthalmus_magnuspinnatus
ENSRNOG00000016733	Rab13	67	100.000	ENSPEMG00000017353	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000016733	Rab13	100	90.686	ENSPCIG00000029350	-	100	90.686	Phascolarctos_cinereus
ENSRNOG00000016733	Rab13	94	73.980	ENSPLAG00000005832	RAB13	93	82.659	Poecilia_latipinna
ENSRNOG00000016733	Rab13	90	79.235	ENSPREG00000017567	rab13	99	74.257	Poecilia_reticulata
ENSRNOG00000016733	Rab13	100	92.611	ENSPPYG00000000790	-	100	92.611	Pongo_abelii
ENSRNOG00000016733	Rab13	100	91.626	ENSPCOG00000012189	-	100	91.626	Propithecus_coquereli
ENSRNOG00000016733	Rab13	100	91.133	ENSPVAG00000011095	-	100	91.133	Pteropus_vampyrus
ENSRNOG00000016733	Rab13	92	81.183	ENSPNAG00000004189	rab13	95	81.183	Pygocentrus_nattereri
ENSRNOG00000016733	Rab13	100	92.118	ENSRBIG00000008552	-	100	92.118	Rhinopithecus_bieti
ENSRNOG00000016733	Rab13	100	92.118	ENSRROG00000036885	-	100	92.118	Rhinopithecus_roxellana
ENSRNOG00000016733	Rab13	100	92.118	ENSSBOG00000020342	-	100	92.118	Saimiri_boliviensis_boliviensis
ENSRNOG00000016733	Rab13	100	91.176	ENSSHAG00000011866	-	100	91.176	Sarcophilus_harrisii
ENSRNOG00000016733	Rab13	100	92.611	ENSSSCG00000006564	-	100	92.611	Sus_scrofa
ENSRNOG00000016733	Rab13	99	75.000	ENSTRUG00000024177	rab13	99	75.000	Takifugu_rubripes
ENSRNOG00000016733	Rab13	100	92.118	ENSTBEG00000012734	-	100	92.118	Tupaia_belangeri
ENSRNOG00000016733	Rab13	100	93.103	ENSTTRG00000011183	-	100	93.103	Tursiops_truncatus
ENSRNOG00000016733	Rab13	70	79.021	ENSXETG00000020729	rab13	99	77.019	Xenopus_tropicalis
ENSRNOG00000016733	Rab13	85	82.659	ENSXCOG00000019533	rab13	93	82.659	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005515	protein binding	23772379.	IPI	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005525	GTP binding	-	ISO	Function
GO:0005525	GTP binding	-	ISS	Function
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005802	trans-Golgi network	-	ISO	Component
GO:0005802	trans-Golgi network	-	ISS	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005886	plasma membrane	-	ISS	Component
GO:0005911	cell-cell junction	-	ISO	Component
GO:0005923	bicellular tight junction	-	ISO	Component
GO:0005923	bicellular tight junction	-	ISS	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0010737	protein kinase A signaling	23419316.	IMP	Process
GO:0010737	protein kinase A signaling	-	ISO	Process
GO:0016197	endosomal transport	-	ISO	Process
GO:0016197	endosomal transport	-	ISS	Process
GO:0016328	lateral plasma membrane	-	ISO	Component
GO:0016328	lateral plasma membrane	-	ISS	Component
GO:0030027	lamellipodium	-	ISO	Component
GO:0030027	lamellipodium	-	ISS	Component
GO:0030139	endocytic vesicle	-	ISO	Component
GO:0030139	endocytic vesicle	-	ISS	Component
GO:0030659	cytoplasmic vesicle membrane	-	TAS	Component
GO:0030866	cortical actin cytoskeleton organization	23419316.	IMP	Process
GO:0031175	neuron projection development	20008558.	IMP	Process
GO:0031175	neuron projection development	-	ISO	Process
GO:0031410	cytoplasmic vesicle	-	ISO	Component
GO:0032456	endocytic recycling	-	ISO	Process
GO:0032456	endocytic recycling	-	ISS	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0032593	insulin-responsive compartment	21041651.	IDA	Component
GO:0032869	cellular response to insulin stimulus	21041651.	IMP	Process
GO:0034236	protein kinase A catalytic subunit binding	23419316.	IPI	Function
GO:0035767	endothelial cell chemotaxis	-	ISO	Process
GO:0035767	endothelial cell chemotaxis	-	ISS	Process
GO:0042593	glucose homeostasis	21041651.	IC	Process
GO:0043005	neuron projection	-	ISO	Component
GO:0043005	neuron projection	-	ISS	Component
GO:0044795	trans-Golgi network to recycling endosome transport	-	ISO	Process
GO:0044795	trans-Golgi network to recycling endosome transport	-	ISS	Process
GO:0046326	positive regulation of glucose import	21041651.	IC	Process
GO:0055037	recycling endosome	-	ISO	Component
GO:0055037	recycling endosome	-	ISS	Component
GO:0055038	recycling endosome membrane	-	IEA	Component
GO:0070830	bicellular tight junction assembly	-	ISO	Process
GO:0070830	bicellular tight junction assembly	-	ISS	Process
GO:0072659	protein localization to plasma membrane	21041651.	IDA	Process
GO:0072659	protein localization to plasma membrane	-	ISO	Process
GO:0072659	protein localization to plasma membrane	-	ISS	Process
GO:0097368	establishment of Sertoli cell barrier	23419316.	IMP	Process
GO:1902463	protein localization to cell leading edge	-	ISO	Process
GO:1902463	protein localization to cell leading edge	-	ISS	Process