EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000016744 (Gene tree)
Gene ID: 311607
Gene Symbol: Chd6
Alias: CHD-6|LOC311607
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 161574 bases
Position: chr3:156937733-157099306
Accession: 1310465
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000022861	ResIII	PF04851.15	3.2e-07	1	1
ENSRNOP00000071893	ResIII	PF04851.15	3.3e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000089958	-	10512	XM_006235483	ENSRNOP00000071893	2711 (aa)	XP_006235545	A0A0G2K1L7
ENSRNOT00000022861	-	10472	XM_006235482	ENSRNOP00000022861	2698 (aa)	XP_006235544	D3ZA12

Gene Model

Click here to download ENSRNOG00000016744's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000016744's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000016744	Chd6	80	65.746	ENSRNOG00000006689	Chd7	76	63.602
ENSRNOG00000016744	Chd6	58	63.075	ENSRNOG00000025011	Chd8	59	63.685
ENSRNOG00000016744	Chd6	73	58.021	ENSRNOG00000049302	Chd9	68	65.869

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000016744	Chd6	100	87.541	ENSG00000124177	CHD6	99	96.599	Homo_sapiens
ENSRNOG00000016744	Chd6	74	74.818	ENSAPOG00000013736	chd6	66	72.414	Acanthochromis_polyacanthus
ENSRNOG00000016744	Chd6	100	86.723	ENSAMEG00000009496	CHD6	100	86.797	Ailuropoda_melanoleuca
ENSRNOG00000016744	Chd6	74	74.602	ENSATEG00000005608	chd6	69	68.213	Anabas_testudineus
ENSRNOG00000016744	Chd6	99	70.586	ENSAPLG00000015592	CHD6	99	71.470	Anas_platyrhynchos
ENSRNOG00000016744	Chd6	99	66.545	ENSACAG00000006842	CHD6	99	66.969	Anolis_carolinensis
ENSRNOG00000016744	Chd6	100	87.100	ENSANAG00000037548	CHD6	99	90.826	Aotus_nancymaae
ENSRNOG00000016744	Chd6	76	73.320	ENSAMXG00000009576	chd6	76	71.383	Astyanax_mexicanus
ENSRNOG00000016744	Chd6	100	83.835	ENSBTAG00000005733	CHD6	100	84.019	Bos_taurus
ENSRNOG00000016744	Chd6	100	87.132	ENSCJAG00000017920	CHD6	99	90.642	Callithrix_jacchus
ENSRNOG00000016744	Chd6	100	86.792	ENSCAFG00000009236	CHD6	100	86.865	Canis_familiaris
ENSRNOG00000016744	Chd6	99	86.499	ENSCAFG00020012906	CHD6	99	93.195	Canis_lupus_dingo
ENSRNOG00000016744	Chd6	100	83.872	ENSCHIG00000017606	CHD6	100	84.056	Capra_hircus
ENSRNOG00000016744	Chd6	84	87.248	ENSTSYG00000014635	CHD6	100	87.336	Carlito_syrichta
ENSRNOG00000016744	Chd6	100	87.826	ENSCPOG00000015641	CHD6	100	88.047	Cavia_porcellus
ENSRNOG00000016744	Chd6	100	87.505	ENSCCAG00000036828	CHD6	99	90.826	Cebus_capucinus
ENSRNOG00000016744	Chd6	100	87.100	ENSCATG00000039248	CHD6	99	90.826	Cercocebus_atys
ENSRNOG00000016744	Chd6	100	87.596	ENSCLAG00000013743	CHD6	100	87.780	Chinchilla_lanigera
ENSRNOG00000016744	Chd6	100	87.431	ENSCSAG00000013997	CHD6	100	87.505	Chlorocebus_sabaeus
ENSRNOG00000016744	Chd6	91	85.761	ENSCHOG00000012647	CHD6	95	85.761	Choloepus_hoffmanni
ENSRNOG00000016744	Chd6	99	72.200	ENSCPBG00000019382	CHD6	99	72.620	Chrysemys_picta_bellii
ENSRNOG00000016744	Chd6	100	87.716	ENSCANG00000043435	CHD6	99	90.826	Colobus_angolensis_palliatus
ENSRNOG00000016744	Chd6	100	93.552	ENSCGRG00001002694	Chd6	100	93.552	Cricetulus_griseus_chok1gshd
ENSRNOG00000016744	Chd6	82	72.924	ENSDARG00000017244	chd6	79	72.924	Danio_rerio
ENSRNOG00000016744	Chd6	99	85.551	ENSDNOG00000004176	CHD6	100	85.699	Dasypus_novemcinctus
ENSRNOG00000016744	Chd6	99	86.541	ENSEASG00005023433	CHD6	95	94.981	Equus_asinus_asinus
ENSRNOG00000016744	Chd6	99	87.228	ENSECAG00000011761	CHD6	100	87.008	Equus_caballus
ENSRNOG00000016744	Chd6	70	79.692	ENSELUG00000012309	chd6	88	79.692	Esox_lucius
ENSRNOG00000016744	Chd6	100	86.502	ENSFCAG00000003572	CHD6	100	86.539	Felis_catus
ENSRNOG00000016744	Chd6	99	70.389	ENSFALG00000012563	CHD6	99	70.022	Ficedula_albicollis
ENSRNOG00000016744	Chd6	99	88.294	ENSFDAG00000013791	CHD6	99	88.479	Fukomys_damarensis
ENSRNOG00000016744	Chd6	73	69.181	ENSGMOG00000011715	chd6	85	69.325	Gadus_morhua
ENSRNOG00000016744	Chd6	78	69.423	ENSGACG00000000037	chd6	86	69.289	Gasterosteus_aculeatus
ENSRNOG00000016744	Chd6	100	87.468	ENSGGOG00000013123	CHD6	99	90.826	Gorilla_gorilla
ENSRNOG00000016744	Chd6	77	71.572	ENSHBUG00000014701	chd6	61	75.862	Haplochromis_burtoni
ENSRNOG00000016744	Chd6	100	88.051	ENSHGLG00000004548	CHD6	100	88.162	Heterocephalus_glaber_female
ENSRNOG00000016744	Chd6	100	88.051	ENSHGLG00100006401	CHD6	100	88.162	Heterocephalus_glaber_male
ENSRNOG00000016744	Chd6	76	76.216	ENSIPUG00000003692	chd6	78	75.733	Ictalurus_punctatus
ENSRNOG00000016744	Chd6	100	88.672	ENSSTOG00000013382	CHD6	100	88.746	Ictidomys_tridecemlineatus
ENSRNOG00000016744	Chd6	87	75.615	ENSLACG00000010881	CHD6	86	75.688	Latimeria_chalumnae
ENSRNOG00000016744	Chd6	73	79.904	ENSLOCG00000007386	chd6	85	74.457	Lepisosteus_oculatus
ENSRNOG00000016744	Chd6	100	86.797	ENSLAFG00000012144	CHD6	100	87.140	Loxodonta_africana
ENSRNOG00000016744	Chd6	100	87.468	ENSMFAG00000032830	CHD6	99	90.826	Macaca_fascicularis
ENSRNOG00000016744	Chd6	100	87.468	ENSMMUG00000020458	CHD6	99	90.826	Macaca_mulatta
ENSRNOG00000016744	Chd6	100	87.468	ENSMNEG00000040847	CHD6	99	90.826	Macaca_nemestrina
ENSRNOG00000016744	Chd6	99	87.897	ENSMLEG00000031965	CHD6	99	90.826	Mandrillus_leucophaeus
ENSRNOG00000016744	Chd6	77	70.882	ENSMAMG00000013111	chd6	63	80.435	Mastacembelus_armatus
ENSRNOG00000016744	Chd6	99	70.337	ENSMGAG00000001121	CHD6	99	71.172	Meleagris_gallopavo
ENSRNOG00000016744	Chd6	99	88.172	ENSMICG00000016641	CHD6	99	91.376	Microcebus_murinus
ENSRNOG00000016744	Chd6	89	77.915	ENSMODG00000000720	-	99	78.039	Monodelphis_domestica
ENSRNOG00000016744	Chd6	100	95.463	MGP_CAROLIEiJ_G0024604	Chd6	100	98.311	Mus_caroli
ENSRNOG00000016744	Chd6	100	95.684	ENSMUSG00000057133	Chd6	100	98.226	Mus_musculus
ENSRNOG00000016744	Chd6	100	95.721	MGP_PahariEiJ_G0026048	Chd6	100	98.564	Mus_pahari
ENSRNOG00000016744	Chd6	100	95.647	MGP_SPRETEiJ_G0025526	Chd6	100	98.311	Mus_spretus
ENSRNOG00000016744	Chd6	100	85.363	ENSMPUG00000017695	CHD6	100	85.437	Mustela_putorius_furo
ENSRNOG00000016744	Chd6	100	86.135	ENSMLUG00000016247	CHD6	100	86.282	Myotis_lucifugus
ENSRNOG00000016744	Chd6	78	72.680	ENSNBRG00000013839	chd6	80	72.552	Neolamprologus_brichardi
ENSRNOG00000016744	Chd6	100	86.218	ENSNLEG00000006496	CHD6	99	87.112	Nomascus_leucogenys
ENSRNOG00000016744	Chd6	100	83.303	ENSOPRG00000013376	-	100	83.376	Ochotona_princeps
ENSRNOG00000016744	Chd6	81	74.262	ENSONIG00000000393	chd6	82	74.161	Oreochromis_niloticus
ENSRNOG00000016744	Chd6	99	68.157	ENSOANG00000014347	CHD6	86	75.043	Ornithorhynchus_anatinus
ENSRNOG00000016744	Chd6	99	85.604	ENSOCUG00000012394	CHD6	100	85.278	Oryctolagus_cuniculus
ENSRNOG00000016744	Chd6	77	72.774	ENSORLG00020021891	chd6	95	85.371	Oryzias_latipes_hni
ENSRNOG00000016744	Chd6	99	86.640	ENSOGAG00000002427	CHD6	100	86.019	Otolemur_garnettii
ENSRNOG00000016744	Chd6	99	82.601	ENSOARG00000002597	CHD6	100	82.785	Ovis_aries
ENSRNOG00000016744	Chd6	100	86.613	ENSPPRG00000014756	CHD6	100	86.650	Panthera_pardus
ENSRNOG00000016744	Chd6	100	86.502	ENSPTIG00000011094	CHD6	100	86.539	Panthera_tigris_altaica
ENSRNOG00000016744	Chd6	100	87.688	ENSPTRG00000013504	CHD6	99	90.826	Pan_troglodytes
ENSRNOG00000016744	Chd6	100	87.431	ENSPANG00000025554	CHD6	99	91.009	Papio_anubis
ENSRNOG00000016744	Chd6	79	75.816	ENSPKIG00000005578	chd6	79	72.104	Paramormyrops_kingsleyae
ENSRNOG00000016744	Chd6	73	76.060	ENSPMGG00000014877	chd6	84	74.878	Periophthalmus_magnuspinnatus
ENSRNOG00000016744	Chd6	100	76.354	ENSPCIG00000028037	CHD6	100	76.903	Phascolarctos_cinereus
ENSRNOG00000016744	Chd6	75	72.414	ENSPLAG00000003128	chd6	68	72.414	Poecilia_latipinna
ENSRNOG00000016744	Chd6	71	80.285	ENSPREG00000022653	chd6	99	85.531	Poecilia_reticulata
ENSRNOG00000016744	Chd6	100	87.509	ENSPPYG00000011016	CHD6	100	87.583	Pongo_abelii
ENSRNOG00000016744	Chd6	99	88.027	ENSPCOG00000001089	CHD6	99	90.826	Propithecus_coquereli
ENSRNOG00000016744	Chd6	78	73.691	ENSPNYG00000022516	chd6	80	73.601	Pundamilia_nyererei
ENSRNOG00000016744	Chd6	75	75.118	ENSPNAG00000012825	chd6	79	70.042	Pygocentrus_nattereri
ENSRNOG00000016744	Chd6	100	87.358	ENSSBOG00000022089	CHD6	99	90.826	Saimiri_boliviensis_boliviensis
ENSRNOG00000016744	Chd6	100	75.897	ENSSHAG00000017072	CHD6	100	76.529	Sarcophilus_harrisii
ENSRNOG00000016744	Chd6	80	75.459	ENSSFOG00015012920	chd6	81	72.243	Scleropages_formosus
ENSRNOG00000016744	Chd6	59	98.684	ENSSARG00000002615	-	61	98.684	Sorex_araneus
ENSRNOG00000016744	Chd6	100	85.993	ENSSSCG00000007360	CHD6	100	87.009	Sus_scrofa
ENSRNOG00000016744	Chd6	97	72.487	ENSTGUG00000003179	CHD6	100	72.727	Taeniopygia_guttata
ENSRNOG00000016744	Chd6	51	76.517	ENSTNIG00000017487	chd6	59	73.925	Tetraodon_nigroviridis
ENSRNOG00000016744	Chd6	100	83.395	ENSTTRG00000013438	CHD6	100	83.395	Tursiops_truncatus
ENSRNOG00000016744	Chd6	100	85.257	ENSUAMG00000024036	CHD6	95	93.436	Ursus_americanus
ENSRNOG00000016744	Chd6	99	87.329	ENSUMAG00000002017	CHD6	95	93.436	Ursus_maritimus
ENSRNOG00000016744	Chd6	94	86.699	ENSVPAG00000007941	CHD6	95	86.768	Vicugna_pacos
ENSRNOG00000016744	Chd6	100	86.429	ENSVVUG00000029164	CHD6	100	86.502	Vulpes_vulpes
ENSRNOG00000016744	Chd6	100	59.505	ENSXETG00000021445	chd6	100	59.978	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001221	transcription cofactor binding	-	IEA	Function
GO:0001221	transcription cofactor binding	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0008094	DNA-dependent ATPase activity	-	IEA	Function
GO:0008094	DNA-dependent ATPase activity	-	ISO	Function
GO:0008094	DNA-dependent ATPase activity	-	ISS	Function
GO:0036091	positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress	-	IEA	Process
GO:0036091	positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress	-	ISO	Process
GO:0036091	positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress	-	ISS	Process