EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000016852 (Gene tree)
Gene ID: 315137
Gene Symbol: Apobec3
Alias: Apobec3b|Apobec3f|LOC315137|MGC124783
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 19302 bases
Position: chr7:121109241-121128542
Accession: 1307800
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000034183	APOBEC_N	PF08210.11	2.6e-84	1	2
ENSRNOP00000034183	APOBEC_N	PF08210.11	2.6e-84	2	2
ENSRNOP00000034183	APOBEC_C	PF05240.14	1.8e-55	1	2
ENSRNOP00000034183	APOBEC_C	PF05240.14	1.8e-55	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000037134	-	1961	XM_008765715	ENSRNOP00000034183	396 (aa)	XP_008763937	F7EWS7

Gene Model

Click here to download ENSRNOG00000016852's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000016852's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000016852	Apobec3	85	40.244	ENSRNOG00000015478	Aicda	88	40.244
ENSRNOG00000016852	Apobec3	86	33.333	ENSRNOG00000012303	Apobec2	77	33.333
ENSRNOG00000016852	Apobec3	72	33.628	ENSRNOG00000015411	Apobec1	76	33.628

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000016852	Apobec3	87	48.663	ENSG00000100298	APOBEC3H	100	48.663	Homo_sapiens
ENSRNOG00000016852	Apobec3	92	37.939	ENSAMEG00000010818	-	98	37.939	Ailuropoda_melanoleuca
ENSRNOG00000016852	Apobec3	90	48.168	ENSANAG00000025410	APOBEC3H	86	48.168	Aotus_nancymaae
ENSRNOG00000016852	Apobec3	91	48.889	ENSBTAG00000007755	APOBEC3H	94	44.565	Bos_taurus
ENSRNOG00000016852	Apobec3	86	45.946	ENSCJAG00000012524	APOBEC3H	91	46.853	Callithrix_jacchus
ENSRNOG00000016852	Apobec3	91	45.556	ENSCAFG00000001361	APOBEC3Z3	97	45.556	Canis_familiaris
ENSRNOG00000016852	Apobec3	93	44.624	ENSCAFG00020002584	-	99	44.624	Canis_lupus_dingo
ENSRNOG00000016852	Apobec3	91	49.444	ENSCHIG00000026580	-	98	45.430	Capra_hircus
ENSRNOG00000016852	Apobec3	85	51.977	ENSTSYG00000032894	-	100	51.977	Carlito_syrichta
ENSRNOG00000016852	Apobec3	93	46.933	ENSCPOG00000009257	-	88	46.933	Cavia_porcellus
ENSRNOG00000016852	Apobec3	87	45.989	ENSCCAG00000008525	APOBEC3H	91	46.528	Cebus_capucinus
ENSRNOG00000016852	Apobec3	86	50.538	ENSCATG00000030302	APOBEC3H	100	50.538	Cercocebus_atys
ENSRNOG00000016852	Apobec3	90	50.543	ENSCLAG00000016615	-	89	50.543	Chinchilla_lanigera
ENSRNOG00000016852	Apobec3	86	51.596	ENSCSAG00000006371	APOBEC3H	87	51.596	Chlorocebus_sabaeus
ENSRNOG00000016852	Apobec3	100	71.859	ENSCGRG00001022976	Apobec3	96	71.859	Cricetulus_griseus_chok1gshd
ENSRNOG00000016852	Apobec3	100	71.859	ENSCGRG00000005621	Apobec3	96	71.859	Cricetulus_griseus_crigri
ENSRNOG00000016852	Apobec3	98	50.754	ENSDORG00000027271	-	100	50.754	Dipodomys_ordii
ENSRNOG00000016852	Apobec3	99	48.901	ENSECAG00000007726	APOBEC3H	90	48.901	Equus_caballus
ENSRNOG00000016852	Apobec3	91	51.934	ENSFCAG00000005251	APOBEC3Z3	96	51.934	Felis_catus
ENSRNOG00000016852	Apobec3	85	49.727	ENSSTOG00000007125	-	85	49.727	Ictidomys_tridecemlineatus
ENSRNOG00000016852	Apobec3	96	52.408	ENSJJAG00000016840	-	90	52.408	Jaculus_jaculus
ENSRNOG00000016852	Apobec3	93	44.236	ENSLAFG00000027404	-	98	44.236	Loxodonta_africana
ENSRNOG00000016852	Apobec3	90	51.613	ENSMFAG00000031827	APOBEC3H	94	51.613	Macaca_fascicularis
ENSRNOG00000016852	Apobec3	90	51.075	ENSMMUG00000001016	APOBEC3H	94	51.075	Macaca_mulatta
ENSRNOG00000016852	Apobec3	90	51.613	ENSMNEG00000039259	APOBEC3H	94	51.613	Macaca_nemestrina
ENSRNOG00000016852	Apobec3	86	51.075	ENSMLEG00000033417	APOBEC3H	91	51.075	Mandrillus_leucophaeus
ENSRNOG00000016852	Apobec3	100	70.101	ENSMAUG00000011683	Apobec3	98	69.797	Mesocricetus_auratus
ENSRNOG00000016852	Apobec3	100	65.291	ENSMOCG00000021576	Apobec3	99	65.281	Microtus_ochrogaster
ENSRNOG00000016852	Apobec3	100	70.707	MGP_CAROLIEiJ_G0020029	Apobec3	98	72.619	Mus_caroli
ENSRNOG00000016852	Apobec3	100	70.707	ENSMUSG00000009585	Apobec3	100	69.697	Mus_musculus
ENSRNOG00000016852	Apobec3	100	74.559	MGP_PahariEiJ_G0020031	-	98	74.365	Mus_pahari
ENSRNOG00000016852	Apobec3	100	70.202	MGP_SPRETEiJ_G0020927	Apobec3	98	72.619	Mus_spretus
ENSRNOG00000016852	Apobec3	92	44.920	ENSMPUG00000013239	-	94	44.920	Mustela_putorius_furo
ENSRNOG00000016852	Apobec3	100	56.659	ENSNGAG00000018998	Apobec3	95	58.793	Nannospalax_galili
ENSRNOG00000016852	Apobec3	83	50.000	ENSNLEG00000015218	-	87	50.000	Nomascus_leucogenys
ENSRNOG00000016852	Apobec3	100	42.680	ENSOCUG00000023913	-	99	42.680	Oryctolagus_cuniculus
ENSRNOG00000016852	Apobec3	92	45.699	ENSOARG00000016290	APOBEC3F	98	45.699	Ovis_aries
ENSRNOG00000016852	Apobec3	84	48.128	ENSPPAG00000036522	APOBEC3H	100	48.128	Pan_paniscus
ENSRNOG00000016852	Apobec3	91	54.144	ENSPPRG00000003941	-	96	54.144	Panthera_pardus
ENSRNOG00000016852	Apobec3	89	42.784	ENSPPRG00000003675	-	98	42.784	Panthera_pardus
ENSRNOG00000016852	Apobec3	91	54.144	ENSPTIG00000010283	-	96	54.144	Panthera_tigris_altaica
ENSRNOG00000016852	Apobec3	84	48.128	ENSPTRG00000014390	APOBEC3H	100	48.128	Pan_troglodytes
ENSRNOG00000016852	Apobec3	86	51.075	ENSPANG00000010774	APOBEC3H	94	48.925	Papio_anubis
ENSRNOG00000016852	Apobec3	100	65.882	ENSPEMG00000000456	Apobec3	96	65.882	Peromyscus_maniculatus_bairdii
ENSRNOG00000016852	Apobec3	84	48.947	ENSPPYG00000011834	-	88	48.947	Pongo_abelii
ENSRNOG00000016852	Apobec3	84	37.989	ENSPCAG00000015655	-	99	37.989	Procavia_capensis
ENSRNOG00000016852	Apobec3	62	48.819	ENSPVAG00000024161	-	93	48.819	Pteropus_vampyrus
ENSRNOG00000016852	Apobec3	85	49.721	ENSPVAG00000009462	-	99	49.721	Pteropus_vampyrus
ENSRNOG00000016852	Apobec3	62	48.031	ENSPVAG00000024267	-	93	48.031	Pteropus_vampyrus
ENSRNOG00000016852	Apobec3	86	49.198	ENSRBIG00000029088	APOBEC3H	91	49.189	Rhinopithecus_bieti
ENSRNOG00000016852	Apobec3	91	47.000	ENSRROG00000024699	APOBEC3H	91	49.189	Rhinopithecus_roxellana
ENSRNOG00000016852	Apobec3	86	51.351	ENSSBOG00000030005	APOBEC3H	100	52.448	Saimiri_boliviensis_boliviensis
ENSRNOG00000016852	Apobec3	98	42.040	ENSSSCG00000000091	APOBEC3B	93	42.040	Sus_scrofa
ENSRNOG00000016852	Apobec3	83	45.665	ENSTBEG00000001532	-	100	45.665	Tupaia_belangeri
ENSRNOG00000016852	Apobec3	85	45.856	ENSTTRG00000001266	-	100	45.856	Tursiops_truncatus
ENSRNOG00000016852	Apobec3	92	47.120	ENSUAMG00000004427	-	86	47.120	Ursus_americanus
ENSRNOG00000016852	Apobec3	92	49.457	ENSUMAG00000014435	-	99	49.457	Ursus_maritimus
ENSRNOG00000016852	Apobec3	57	44.355	ENSVPAG00000011108	-	98	44.355	Vicugna_pacos

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	-	ISO	Component
GO:0002244	hematopoietic progenitor cell differentiation	-	ISO	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0004126	cytidine deaminase activity	21873635.	IBA	Function
GO:0004126	cytidine deaminase activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0009972	cytidine deamination	-	IEA	Process
GO:0010529	negative regulation of transposition	-	ISO	Process
GO:0010529	negative regulation of transposition	-	ISS	Process
GO:0016554	cytidine to uridine editing	21873635.	IBA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0045071	negative regulation of viral genome replication	-	ISO	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0045869	negative regulation of single stranded viral RNA replication via double stranded DNA intermediate	-	ISO	Process
GO:0048525	negative regulation of viral process	-	ISO	Process
GO:0050688	regulation of defense response to virus	-	ISO	Process
GO:0051607	defense response to virus	-	IEA	Process
GO:0051607	defense response to virus	-	ISO	Process
GO:0070383	DNA cytosine deamination	-	ISO	Process
GO:0080111	DNA demethylation	21873635.	IBA	Process
GO:1903900	regulation of viral life cycle	-	ISO	Process