EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000016919 (Gene tree)
Gene ID: 245926
Gene Symbol: Scaf8
Alias: LOC245926|Rbm16
Full Name: SR-related CTD-associated factor 8
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 101557 bases
Position: chr1:44019059-44120615
Accession: 708362
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073484	RRM_1	PF00076.22	1.7e-08	1	1
ENSRNOP00000062541	RRM_1	PF00076.22	1.7e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000065733	-	4775	XM_006227858	ENSRNOP00000062541	1268 (aa)	XP_006227920	F1LPT8
ENSRNOT00000083425	-	4054	-	ENSRNOP00000073484	1264 (aa)	-	A0A0G2K5M7

Gene Model

Click here to download ENSRNOG00000016919's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000016919's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000016919	Scaf8	100	91.660	ENSG00000213079	SCAF8	100	91.660	Homo_sapiens
ENSRNOG00000016919	Scaf8	86	69.571	ENSAPOG00000015527	SCAF8	77	69.202	Acanthochromis_polyacanthus
ENSRNOG00000016919	Scaf8	100	91.232	ENSAMEG00000007583	SCAF8	97	89.775	Ailuropoda_melanoleuca
ENSRNOG00000016919	Scaf8	86	69.693	ENSAOCG00000002421	SCAF8	76	69.325	Amphiprion_ocellaris
ENSRNOG00000016919	Scaf8	85	70.210	ENSATEG00000006959	SCAF8	94	69.514	Anabas_testudineus
ENSRNOG00000016919	Scaf8	100	77.163	ENSAPLG00000005765	SCAF8	100	77.163	Anas_platyrhynchos
ENSRNOG00000016919	Scaf8	99	73.270	ENSACAG00000005282	SCAF8	99	73.192	Anolis_carolinensis
ENSRNOG00000016919	Scaf8	100	91.581	ENSANAG00000036184	SCAF8	100	91.581	Aotus_nancymaae
ENSRNOG00000016919	Scaf8	82	72.906	ENSACLG00000018828	SCAF8	78	72.382	Astatotilapia_calliptera
ENSRNOG00000016919	Scaf8	100	90.859	ENSBTAG00000031917	SCAF8	100	90.859	Bos_taurus
ENSRNOG00000016919	Scaf8	100	91.581	ENSCJAG00000012631	SCAF8	97	90.093	Callithrix_jacchus
ENSRNOG00000016919	Scaf8	100	91.871	ENSCAFG00000000570	SCAF8	100	91.871	Canis_familiaris
ENSRNOG00000016919	Scaf8	99	91.838	ENSCAFG00020015048	SCAF8	99	91.785	Canis_lupus_dingo
ENSRNOG00000016919	Scaf8	100	90.465	ENSCHIG00000025041	SCAF8	100	90.465	Capra_hircus
ENSRNOG00000016919	Scaf8	100	91.239	ENSTSYG00000010991	SCAF8	97	91.239	Carlito_syrichta
ENSRNOG00000016919	Scaf8	99	83.544	ENSCPOG00000022216	-	99	82.753	Cavia_porcellus
ENSRNOG00000016919	Scaf8	100	91.581	ENSCCAG00000024952	SCAF8	100	91.581	Cebus_capucinus
ENSRNOG00000016919	Scaf8	100	92.054	ENSCATG00000035361	SCAF8	100	92.054	Cercocebus_atys
ENSRNOG00000016919	Scaf8	100	90.859	ENSCLAG00000004910	SCAF8	100	91.342	Chinchilla_lanigera
ENSRNOG00000016919	Scaf8	100	92.028	ENSCSAG00000013430	SCAF8	100	90.635	Chlorocebus_sabaeus
ENSRNOG00000016919	Scaf8	100	74.118	ENSCPBG00000016330	SCAF8	100	73.529	Chrysemys_picta_bellii
ENSRNOG00000016919	Scaf8	100	91.817	ENSCANG00000039499	SCAF8	99	91.753	Colobus_angolensis_palliatus
ENSRNOG00000016919	Scaf8	100	96.454	ENSCGRG00001020167	Scaf8	100	96.454	Cricetulus_griseus_chok1gshd
ENSRNOG00000016919	Scaf8	99	96.349	ENSCGRG00000004120	Scaf8	99	96.349	Cricetulus_griseus_crigri
ENSRNOG00000016919	Scaf8	87	69.856	ENSCSEG00000000043	-	78	71.166	Cynoglossus_semilaevis
ENSRNOG00000016919	Scaf8	89	66.841	ENSCVAG00000000925	SCAF8	77	66.319	Cyprinodon_variegatus
ENSRNOG00000016919	Scaf8	96	85.632	ENSDNOG00000025271	SCAF8	100	89.245	Dasypus_novemcinctus
ENSRNOG00000016919	Scaf8	99	90.823	ENSDORG00000006391	Scaf8	100	90.615	Dipodomys_ordii
ENSRNOG00000016919	Scaf8	100	91.267	ENSEASG00005018879	SCAF8	100	91.267	Equus_asinus_asinus
ENSRNOG00000016919	Scaf8	100	91.417	ENSECAG00000005540	SCAF8	100	91.417	Equus_caballus
ENSRNOG00000016919	Scaf8	82	70.725	ENSELUG00000002779	SCAF8	73	70.390	Esox_lucius
ENSRNOG00000016919	Scaf8	100	91.890	ENSFCAG00000023424	SCAF8	100	91.890	Felis_catus
ENSRNOG00000016919	Scaf8	100	76.246	ENSFALG00000012433	SCAF8	100	76.420	Ficedula_albicollis
ENSRNOG00000016919	Scaf8	100	90.323	ENSFDAG00000010335	SCAF8	99	90.722	Fukomys_damarensis
ENSRNOG00000016919	Scaf8	89	71.204	ENSFHEG00000008284	SCAF8	77	70.942	Fundulus_heteroclitus
ENSRNOG00000016919	Scaf8	80	57.576	ENSGMOG00000018812	SCAF8	83	58.984	Gadus_morhua
ENSRNOG00000016919	Scaf8	99	77.639	ENSGALG00000013635	SCAF8	99	77.025	Gallus_gallus
ENSRNOG00000016919	Scaf8	55	58.974	ENSGAFG00000018033	SCAF8	78	65.031	Gambusia_affinis
ENSRNOG00000016919	Scaf8	82	68.924	ENSGACG00000006909	SCAF8	100	54.054	Gasterosteus_aculeatus
ENSRNOG00000016919	Scaf8	63	70.160	ENSGAGG00000017820	-	88	70.160	Gopherus_agassizii
ENSRNOG00000016919	Scaf8	100	91.581	ENSGGOG00000008645	SCAF8	100	91.581	Gorilla_gorilla
ENSRNOG00000016919	Scaf8	82	72.775	ENSHBUG00000019537	SCAF8	78	72.251	Haplochromis_burtoni
ENSRNOG00000016919	Scaf8	100	91.188	ENSHGLG00000003619	SCAF8	100	91.188	Heterocephalus_glaber_female
ENSRNOG00000016919	Scaf8	100	90.559	ENSHGLG00100004708	SCAF8	100	91.118	Heterocephalus_glaber_male
ENSRNOG00000016919	Scaf8	100	92.035	ENSSTOG00000026043	SCAF8	100	92.035	Ictidomys_tridecemlineatus
ENSRNOG00000016919	Scaf8	100	91.102	ENSJJAG00000020480	Scaf8	100	91.102	Jaculus_jaculus
ENSRNOG00000016919	Scaf8	93	68.550	ENSKMAG00000012767	SCAF8	78	68.182	Kryptolebias_marmoratus
ENSRNOG00000016919	Scaf8	62	75.926	ENSLBEG00000012484	-	54	75.556	Labrus_bergylta
ENSRNOG00000016919	Scaf8	84	78.488	ENSLACG00000001394	SCAF8	99	61.564	Latimeria_chalumnae
ENSRNOG00000016919	Scaf8	100	60.748	ENSLOCG00000016856	SCAF8	100	59.969	Lepisosteus_oculatus
ENSRNOG00000016919	Scaf8	100	90.102	ENSLAFG00000000022	SCAF8	100	90.652	Loxodonta_africana
ENSRNOG00000016919	Scaf8	100	92.132	ENSMFAG00000032738	SCAF8	100	92.132	Macaca_fascicularis
ENSRNOG00000016919	Scaf8	100	92.132	ENSMMUG00000015163	SCAF8	100	92.132	Macaca_mulatta
ENSRNOG00000016919	Scaf8	100	92.132	ENSMNEG00000043466	SCAF8	100	92.132	Macaca_nemestrina
ENSRNOG00000016919	Scaf8	100	92.028	ENSMLEG00000034845	SCAF8	99	92.070	Mandrillus_leucophaeus
ENSRNOG00000016919	Scaf8	83	66.146	ENSMAMG00000009457	SCAF8	76	65.234	Mastacembelus_armatus
ENSRNOG00000016919	Scaf8	82	72.775	ENSMZEG00005005698	SCAF8	78	72.251	Maylandia_zebra
ENSRNOG00000016919	Scaf8	99	76.607	ENSMGAG00000012762	SCAF8	100	77.061	Meleagris_gallopavo
ENSRNOG00000016919	Scaf8	99	95.473	ENSMAUG00000009513	Scaf8	100	95.473	Mesocricetus_auratus
ENSRNOG00000016919	Scaf8	100	90.881	ENSMICG00000028965	SCAF8	100	90.723	Microcebus_murinus
ENSRNOG00000016919	Scaf8	100	96.454	ENSMOCG00000014950	Scaf8	100	96.454	Microtus_ochrogaster
ENSRNOG00000016919	Scaf8	80	67.925	ENSMMOG00000002216	SCAF8	75	66.846	Mola_mola
ENSRNOG00000016919	Scaf8	100	84.464	ENSMODG00000008301	SCAF8	100	84.464	Monodelphis_domestica
ENSRNOG00000016919	Scaf8	82	71.410	ENSMALG00000011584	SCAF8	78	71.447	Monopterus_albus
ENSRNOG00000016919	Scaf8	100	96.924	MGP_CAROLIEiJ_G0021016	Scaf8	100	96.924	Mus_caroli
ENSRNOG00000016919	Scaf8	100	96.924	ENSMUSG00000046201	Scaf8	100	96.924	Mus_musculus
ENSRNOG00000016919	Scaf8	100	97.319	MGP_PahariEiJ_G0023334	Scaf8	100	97.319	Mus_pahari
ENSRNOG00000016919	Scaf8	100	91.311	ENSMPUG00000001974	SCAF8	100	89.853	Mustela_putorius_furo
ENSRNOG00000016919	Scaf8	100	89.606	ENSMLUG00000029190	SCAF8	100	89.606	Myotis_lucifugus
ENSRNOG00000016919	Scaf8	100	93.065	ENSNGAG00000012332	Scaf8	100	93.065	Nannospalax_galili
ENSRNOG00000016919	Scaf8	100	52.859	ENSNBRG00000009067	SCAF8	100	52.318	Neolamprologus_brichardi
ENSRNOG00000016919	Scaf8	100	90.267	ENSNLEG00000015509	SCAF8	99	90.111	Nomascus_leucogenys
ENSRNOG00000016919	Scaf8	70	90.179	ENSOPRG00000018413	-	76	91.011	Ochotona_princeps
ENSRNOG00000016919	Scaf8	100	90.802	ENSODEG00000007296	SCAF8	100	90.802	Octodon_degus
ENSRNOG00000016919	Scaf8	93	57.921	ENSONIG00000008119	SCAF8	99	55.151	Oreochromis_niloticus
ENSRNOG00000016919	Scaf8	100	92.429	ENSOCUG00000026063	SCAF8	100	92.429	Oryctolagus_cuniculus
ENSRNOG00000016919	Scaf8	93	56.379	ENSORLG00000017358	SCAF8	75	71.728	Oryzias_latipes
ENSRNOG00000016919	Scaf8	93	56.543	ENSORLG00020002214	SCAF8	75	71.859	Oryzias_latipes_hni
ENSRNOG00000016919	Scaf8	93	56.507	ENSORLG00015015779	SCAF8	75	71.990	Oryzias_latipes_hsok
ENSRNOG00000016919	Scaf8	82	71.990	ENSOMEG00000015471	SCAF8	78	71.990	Oryzias_melastigma
ENSRNOG00000016919	Scaf8	100	91.002	ENSOGAG00000034223	SCAF8	97	89.628	Otolemur_garnettii
ENSRNOG00000016919	Scaf8	99	90.238	ENSOARG00000004159	SCAF8	100	90.238	Ovis_aries
ENSRNOG00000016919	Scaf8	100	91.503	ENSPPAG00000039826	SCAF8	100	91.503	Pan_paniscus
ENSRNOG00000016919	Scaf8	100	91.732	ENSPPRG00000023175	SCAF8	100	91.732	Panthera_pardus
ENSRNOG00000016919	Scaf8	99	91.601	ENSPTIG00000014836	SCAF8	100	91.601	Panthera_tigris_altaica
ENSRNOG00000016919	Scaf8	100	91.660	ENSPTRG00000018727	SCAF8	100	91.660	Pan_troglodytes
ENSRNOG00000016919	Scaf8	100	91.975	ENSPANG00000017489	SCAF8	100	90.213	Papio_anubis
ENSRNOG00000016919	Scaf8	91	76.309	ENSPKIG00000021212	SCAF8	98	74.869	Paramormyrops_kingsleyae
ENSRNOG00000016919	Scaf8	89	69.989	ENSPSIG00000008614	SCAF8	99	70.896	Pelodiscus_sinensis
ENSRNOG00000016919	Scaf8	99	96.585	ENSPEMG00000010531	Scaf8	100	96.585	Peromyscus_maniculatus_bairdii
ENSRNOG00000016919	Scaf8	100	84.748	ENSPCIG00000001141	SCAF8	100	84.748	Phascolarctos_cinereus
ENSRNOG00000016919	Scaf8	57	54.015	ENSPFOG00000004176	SCAF8	100	54.361	Poecilia_formosa
ENSRNOG00000016919	Scaf8	93	66.170	ENSPLAG00000021432	SCAF8	77	65.596	Poecilia_latipinna
ENSRNOG00000016919	Scaf8	57	58.807	ENSPMEG00000007591	SCAF8	84	64.833	Poecilia_mexicana
ENSRNOG00000016919	Scaf8	93	68.758	ENSPREG00000000652	SCAF8	77	71.204	Poecilia_reticulata
ENSRNOG00000016919	Scaf8	100	90.338	ENSPPYG00000017121	SCAF8	100	90.024	Pongo_abelii
ENSRNOG00000016919	Scaf8	85	96.315	ENSPCAG00000013044	SCAF8	90	96.315	Procavia_capensis
ENSRNOG00000016919	Scaf8	100	91.509	ENSPCOG00000002067	SCAF8	99	91.284	Propithecus_coquereli
ENSRNOG00000016919	Scaf8	98	88.720	ENSPVAG00000005582	SCAF8	99	89.840	Pteropus_vampyrus
ENSRNOG00000016919	Scaf8	82	72.906	ENSPNYG00000007277	SCAF8	78	72.382	Pundamilia_nyererei
ENSRNOG00000016919	Scaf8	87	68.254	ENSPNAG00000024740	SCAF8	82	68.582	Pygocentrus_nattereri
ENSRNOG00000016919	Scaf8	100	91.975	ENSRBIG00000035769	SCAF8	100	91.975	Rhinopithecus_bieti
ENSRNOG00000016919	Scaf8	100	91.896	ENSRROG00000013580	SCAF8	100	91.896	Rhinopithecus_roxellana
ENSRNOG00000016919	Scaf8	100	91.581	ENSSBOG00000027023	SCAF8	100	91.581	Saimiri_boliviensis_boliviensis
ENSRNOG00000016919	Scaf8	100	84.289	ENSSHAG00000009915	SCAF8	100	84.289	Sarcophilus_harrisii
ENSRNOG00000016919	Scaf8	100	55.229	ENSSFOG00015009481	SCAF8	94	66.751	Scleropages_formosus
ENSRNOG00000016919	Scaf8	82	72.026	ENSSMAG00000008275	SCAF8	75	71.373	Scophthalmus_maximus
ENSRNOG00000016919	Scaf8	100	76.226	ENSSPUG00000015219	SCAF8	100	76.226	Sphenodon_punctatus
ENSRNOG00000016919	Scaf8	100	90.945	ENSSSCG00000004070	SCAF8	100	90.945	Sus_scrofa
ENSRNOG00000016919	Scaf8	99	77.909	ENSTGUG00000011151	SCAF8	100	78.066	Taeniopygia_guttata
ENSRNOG00000016919	Scaf8	82	70.327	ENSTRUG00000009243	SCAF8	76	70.065	Takifugu_rubripes
ENSRNOG00000016919	Scaf8	93	54.359	ENSTNIG00000016885	SCAF8	99	54.276	Tetraodon_nigroviridis
ENSRNOG00000016919	Scaf8	99	90.397	ENSTTRG00000014538	SCAF8	100	90.397	Tursiops_truncatus
ENSRNOG00000016919	Scaf8	100	91.102	ENSUAMG00000024736	SCAF8	99	91.032	Ursus_americanus
ENSRNOG00000016919	Scaf8	98	91.004	ENSUMAG00000013404	SCAF8	100	91.004	Ursus_maritimus
ENSRNOG00000016919	Scaf8	67	81.607	ENSVPAG00000012465	SCAF8	99	80.460	Vicugna_pacos
ENSRNOG00000016919	Scaf8	100	91.864	ENSVVUG00000007532	SCAF8	100	91.864	Vulpes_vulpes
ENSRNOG00000016919	Scaf8	100	60.964	ENSXETG00000013132	scaf8	99	61.303	Xenopus_tropicalis
ENSRNOG00000016919	Scaf8	93	68.881	ENSXMAG00000019192	SCAF8	78	68.389	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000993	RNA polymerase II complex binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006366	transcription by RNA polymerase II	8692929.	IMP	Process
GO:0006369	termination of RNA polymerase II transcription	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006397	mRNA processing	8692929.	IMP	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016363	nuclear matrix	9528809.	IDA	Component
GO:0019904	protein domain specific binding	8692929.	IMP	Function
GO:0043175	RNA polymerase core enzyme binding	-	ISO	Function
GO:0070063	RNA polymerase binding	9528809.	IPI	Function