EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017061 (Gene tree)
Gene ID: 366176
Gene Symbol: Patl2
Alias: LOC366176|RGD1307887
Full Name: PAT1 homolog 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 7964 bases
Position: chr3:114066840-114074803
Accession: 1307887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000022964	PAT1	PF09770.9	1.3e-11	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000022964	-	1581	-	ENSRNOP00000022964	526 (aa)	-	D3Z954

Gene Model

Click here to download ENSRNOG00000017061's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017061's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017061	Patl2	98	66.791	ENSG00000229474	PATL2	93	78.963	Homo_sapiens
ENSRNOG00000017061	Patl2	75	44.638	ENSAPOG00000022988	patl2	58	44.363	Acanthochromis_polyacanthus
ENSRNOG00000017061	Patl2	87	71.610	ENSAMEG00000014997	PATL2	91	70.309	Ailuropoda_melanoleuca
ENSRNOG00000017061	Patl2	75	42.963	ENSAOCG00000023738	patl2	52	42.961	Amphiprion_ocellaris
ENSRNOG00000017061	Patl2	75	43.951	ENSAPEG00000011299	patl2	62	44.717	Amphiprion_percula
ENSRNOG00000017061	Patl2	75	43.243	ENSATEG00000019567	patl2	61	44.118	Anabas_testudineus
ENSRNOG00000017061	Patl2	77	50.976	ENSAPLG00000003980	PATL2	66	49.512	Anas_platyrhynchos
ENSRNOG00000017061	Patl2	52	36.824	ENSAPLG00000013394	PATL1	59	36.949	Anas_platyrhynchos
ENSRNOG00000017061	Patl2	60	51.385	ENSACAG00000006951	-	96	47.899	Anolis_carolinensis
ENSRNOG00000017061	Patl2	98	66.916	ENSANAG00000022701	PATL2	95	67.477	Aotus_nancymaae
ENSRNOG00000017061	Patl2	75	44.691	ENSACLG00000010326	patl2	54	44.175	Astatotilapia_calliptera
ENSRNOG00000017061	Patl2	71	36.148	ENSAMXG00000010731	patl1	59	35.332	Astyanax_mexicanus
ENSRNOG00000017061	Patl2	87	42.050	ENSAMXG00000020293	patl2	67	42.259	Astyanax_mexicanus
ENSRNOG00000017061	Patl2	62	76.220	ENSBTAG00000001558	PATL2	92	76.220	Bos_taurus
ENSRNOG00000017061	Patl2	98	67.103	ENSCJAG00000002379	PATL2	95	67.103	Callithrix_jacchus
ENSRNOG00000017061	Patl2	97	67.235	ENSCAFG00000013629	PATL2	95	65.666	Canis_familiaris
ENSRNOG00000017061	Patl2	96	67.748	ENSCAFG00020022169	PATL2	94	65.974	Canis_lupus_dingo
ENSRNOG00000017061	Patl2	95	66.016	ENSCHIG00000026665	PATL2	92	65.820	Capra_hircus
ENSRNOG00000017061	Patl2	98	64.607	ENSTSYG00000032456	PATL2	95	64.232	Carlito_syrichta
ENSRNOG00000017061	Patl2	98	66.288	ENSCPOG00000002922	PATL2	99	65.909	Cavia_porcellus
ENSRNOG00000017061	Patl2	98	66.542	ENSCCAG00000025261	PATL2	95	67.420	Cebus_capucinus
ENSRNOG00000017061	Patl2	98	66.234	ENSCATG00000034794	PATL2	93	79.573	Cercocebus_atys
ENSRNOG00000017061	Patl2	98	68.859	ENSCLAG00000014407	PATL2	99	68.472	Chinchilla_lanigera
ENSRNOG00000017061	Patl2	87	70.701	ENSCSAG00000009601	PATL2	95	68.251	Chlorocebus_sabaeus
ENSRNOG00000017061	Patl2	71	35.806	ENSCSAG00000006095	PATL1	50	36.416	Chlorocebus_sabaeus
ENSRNOG00000017061	Patl2	71	35.806	ENSCHOG00000001611	PATL1	55	36.127	Choloepus_hoffmanni
ENSRNOG00000017061	Patl2	81	51.628	ENSCPBG00000006150	PATL2	64	50.345	Chrysemys_picta_bellii
ENSRNOG00000017061	Patl2	98	67.167	ENSCANG00000013856	PATL2	95	68.856	Colobus_angolensis_palliatus
ENSRNOG00000017061	Patl2	98	76.596	ENSCGRG00001010801	Patl2	99	77.756	Cricetulus_griseus_chok1gshd
ENSRNOG00000017061	Patl2	98	76.596	ENSCGRG00000013007	Patl2	99	77.756	Cricetulus_griseus_crigri
ENSRNOG00000017061	Patl2	91	40.078	ENSCSEG00000009438	patl2	72	39.961	Cynoglossus_semilaevis
ENSRNOG00000017061	Patl2	75	39.401	ENSCVAG00000016203	patl2	60	39.706	Cyprinodon_variegatus
ENSRNOG00000017061	Patl2	77	44.660	ENSDARG00000089567	patl2	57	44.153	Danio_rerio
ENSRNOG00000017061	Patl2	71	35.806	ENSDNOG00000038865	PATL1	63	36.416	Dasypus_novemcinctus
ENSRNOG00000017061	Patl2	98	65.009	ENSDNOG00000036837	PATL2	90	65.193	Dasypus_novemcinctus
ENSRNOG00000017061	Patl2	97	65.815	ENSDORG00000026649	Patl2	99	64.912	Dipodomys_ordii
ENSRNOG00000017061	Patl2	62	72.256	ENSETEG00000005068	PATL2	93	74.085	Echinops_telfairi
ENSRNOG00000017061	Patl2	97	64.461	ENSEASG00005017984	PATL2	94	64.461	Equus_asinus_asinus
ENSRNOG00000017061	Patl2	97	67.992	ENSECAG00000013462	PATL2	94	67.235	Equus_caballus
ENSRNOG00000017061	Patl2	71	37.076	ENSELUG00000024249	patl1	51	35.971	Esox_lucius
ENSRNOG00000017061	Patl2	74	46.985	ENSELUG00000023244	patl2	54	46.173	Esox_lucius
ENSRNOG00000017061	Patl2	98	66.856	ENSFCAG00000027170	PATL2	95	64.916	Felis_catus
ENSRNOG00000017061	Patl2	78	51.773	ENSFALG00000009768	PATL2	56	52.941	Ficedula_albicollis
ENSRNOG00000017061	Patl2	98	65.830	ENSFDAG00000012242	PATL2	99	63.671	Fukomys_damarensis
ENSRNOG00000017061	Patl2	55	40.816	ENSFHEG00000009727	patl2	57	40.816	Fundulus_heteroclitus
ENSRNOG00000017061	Patl2	78	42.143	ENSGMOG00000005666	patl2	99	42.453	Gadus_morhua
ENSRNOG00000017061	Patl2	76	51.852	ENSGALG00000002167	PATL2	51	51.117	Gallus_gallus
ENSRNOG00000017061	Patl2	75	44.691	ENSGAFG00000019344	patl2	56	43.932	Gambusia_affinis
ENSRNOG00000017061	Patl2	67	36.915	ENSGACG00000016448	patl1	59	34.716	Gasterosteus_aculeatus
ENSRNOG00000017061	Patl2	71	35.768	ENSGAGG00000004461	PATL1	50	36.932	Gopherus_agassizii
ENSRNOG00000017061	Patl2	98	67.664	ENSGGOG00000025923	PATL2	95	67.477	Gorilla_gorilla
ENSRNOG00000017061	Patl2	75	44.444	ENSHBUG00000005929	patl2	61	44.743	Haplochromis_burtoni
ENSRNOG00000017061	Patl2	98	66.667	ENSHGLG00000017415	-	99	66.414	Heterocephalus_glaber_female
ENSRNOG00000017061	Patl2	98	66.857	ENSHGLG00100008419	-	99	66.603	Heterocephalus_glaber_male
ENSRNOG00000017061	Patl2	75	44.198	ENSHCOG00000016754	patl2	55	43.932	Hippocampus_comes
ENSRNOG00000017061	Patl2	78	43.810	ENSIPUG00000020692	patl2	59	44.048	Ictalurus_punctatus
ENSRNOG00000017061	Patl2	98	68.156	ENSSTOG00000033848	PATL2	95	67.098	Ictidomys_tridecemlineatus
ENSRNOG00000017061	Patl2	78	41.096	ENSKMAG00000021275	patl2	54	42.029	Kryptolebias_marmoratus
ENSRNOG00000017061	Patl2	79	41.722	ENSLBEG00000022344	patl2	60	41.703	Labrus_bergylta
ENSRNOG00000017061	Patl2	84	41.756	ENSLACG00000005291	-	59	41.970	Latimeria_chalumnae
ENSRNOG00000017061	Patl2	100	65.047	ENSLAFG00000031124	PATL2	100	65.794	Loxodonta_africana
ENSRNOG00000017061	Patl2	98	66.854	ENSMFAG00000003565	PATL2	95	68.966	Macaca_fascicularis
ENSRNOG00000017061	Patl2	62	79.268	ENSMMUG00000014294	PATL2	93	79.268	Macaca_mulatta
ENSRNOG00000017061	Patl2	98	66.048	ENSMNEG00000034510	PATL2	95	68.834	Macaca_nemestrina
ENSRNOG00000017061	Patl2	98	67.161	ENSMLEG00000042248	PATL2	95	67.850	Mandrillus_leucophaeus
ENSRNOG00000017061	Patl2	86	39.829	ENSMAMG00000013327	patl2	72	39.873	Mastacembelus_armatus
ENSRNOG00000017061	Patl2	67	36.512	ENSMAMG00000003950	patl1	55	35.632	Mastacembelus_armatus
ENSRNOG00000017061	Patl2	75	44.691	ENSMZEG00005014292	patl2	54	44.175	Maylandia_zebra
ENSRNOG00000017061	Patl2	81	48.941	ENSMGAG00000001309	PATL2	69	48.364	Meleagris_gallopavo
ENSRNOG00000017061	Patl2	98	76.402	ENSMAUG00000001008	Patl2	96	75.624	Mesocricetus_auratus
ENSRNOG00000017061	Patl2	62	77.439	ENSMICG00000005037	PATL2	93	77.439	Microcebus_murinus
ENSRNOG00000017061	Patl2	98	78.876	ENSMOCG00000015367	Patl2	98	78.876	Microtus_ochrogaster
ENSRNOG00000017061	Patl2	78	34.703	ENSMMOG00000013711	patl1	50	36.313	Mola_mola
ENSRNOG00000017061	Patl2	75	38.653	ENSMMOG00000001299	patl2	59	38.084	Mola_mola
ENSRNOG00000017061	Patl2	87	62.343	ENSMODG00000017690	PATL2	84	60.123	Monodelphis_domestica
ENSRNOG00000017061	Patl2	73	43.655	ENSMALG00000008131	patl2	52	42.927	Monopterus_albus
ENSRNOG00000017061	Patl2	98	88.868	MGP_CAROLIEiJ_G0024205	Patl2	98	88.868	Mus_caroli
ENSRNOG00000017061	Patl2	100	86.981	ENSMUSG00000027233	Patl2	100	87.170	Mus_musculus
ENSRNOG00000017061	Patl2	98	87.476	MGP_PahariEiJ_G0025648	Patl2	98	87.669	Mus_pahari
ENSRNOG00000017061	Patl2	98	87.692	MGP_SPRETEiJ_G0025122	Patl2	98	87.885	Mus_spretus
ENSRNOG00000017061	Patl2	97	64.140	ENSNGAG00000020368	Patl2	98	62.202	Nannospalax_galili
ENSRNOG00000017061	Patl2	75	44.472	ENSNBRG00000011745	patl2	58	44.769	Neolamprologus_brichardi
ENSRNOG00000017061	Patl2	98	67.985	ENSNLEG00000005673	PATL2	95	68.208	Nomascus_leucogenys
ENSRNOG00000017061	Patl2	63	36.994	ENSOPRG00000007963	PATL1	53	36.705	Ochotona_princeps
ENSRNOG00000017061	Patl2	75	44.444	ENSONIG00000011519	patl2	54	43.932	Oreochromis_niloticus
ENSRNOG00000017061	Patl2	84	56.951	ENSOANG00000001538	-	99	58.072	Ornithorhynchus_anatinus
ENSRNOG00000017061	Patl2	65	36.517	ENSOANG00000011117	-	87	36.517	Ornithorhynchus_anatinus
ENSRNOG00000017061	Patl2	100	67.424	ENSOCUG00000006339	PATL2	100	66.667	Oryctolagus_cuniculus
ENSRNOG00000017061	Patl2	75	43.210	ENSORLG00000005780	patl2	55	42.754	Oryzias_latipes
ENSRNOG00000017061	Patl2	75	43.951	ENSORLG00020016506	patl2	53	43.478	Oryzias_latipes_hni
ENSRNOG00000017061	Patl2	75	43.210	ENSORLG00015014500	patl2	55	42.754	Oryzias_latipes_hsok
ENSRNOG00000017061	Patl2	71	42.932	ENSOMEG00000021628	patl2	57	42.243	Oryzias_melastigma
ENSRNOG00000017061	Patl2	95	65.000	ENSOGAG00000004709	PATL2	95	64.962	Otolemur_garnettii
ENSRNOG00000017061	Patl2	100	64.641	ENSOARG00000003762	PATL2	100	64.641	Ovis_aries
ENSRNOG00000017061	Patl2	87	71.610	ENSPPAG00000007221	PATL2	95	66.914	Pan_paniscus
ENSRNOG00000017061	Patl2	98	66.667	ENSPPRG00000004279	PATL2	95	64.728	Panthera_pardus
ENSRNOG00000017061	Patl2	98	66.667	ENSPTIG00000018964	PATL2	95	64.728	Panthera_tigris_altaica
ENSRNOG00000017061	Patl2	87	71.822	ENSPTRG00000041536	PATL2	95	67.100	Pan_troglodytes
ENSRNOG00000017061	Patl2	98	65.985	ENSPANG00000018026	PATL2	95	68.774	Papio_anubis
ENSRNOG00000017061	Patl2	71	43.896	ENSPKIG00000016887	patl2	55	43.855	Paramormyrops_kingsleyae
ENSRNOG00000017061	Patl2	89	45.082	ENSPSIG00000017690	PATL2	100	47.805	Pelodiscus_sinensis
ENSRNOG00000017061	Patl2	79	40.235	ENSPMGG00000014550	patl2	66	40.278	Periophthalmus_magnuspinnatus
ENSRNOG00000017061	Patl2	71	37.922	ENSPMGG00000002644	patl1	51	35.971	Periophthalmus_magnuspinnatus
ENSRNOG00000017061	Patl2	99	80.153	ENSPEMG00000016509	Patl2	98	80.153	Peromyscus_maniculatus_bairdii
ENSRNOG00000017061	Patl2	87	61.388	ENSPCIG00000018256	PATL2	89	59.494	Phascolarctos_cinereus
ENSRNOG00000017061	Patl2	75	44.554	ENSPFOG00000007305	patl2	55	43.796	Poecilia_formosa
ENSRNOG00000017061	Patl2	75	44.554	ENSPLAG00000020713	patl2	55	43.796	Poecilia_latipinna
ENSRNOG00000017061	Patl2	75	44.717	ENSPMEG00000018942	patl2	55	43.796	Poecilia_mexicana
ENSRNOG00000017061	Patl2	65	43.575	ENSPREG00000023066	patl2	55	42.737	Poecilia_reticulata
ENSRNOG00000017061	Patl2	98	64.875	ENSPCOG00000000295	PATL2	93	77.134	Propithecus_coquereli
ENSRNOG00000017061	Patl2	75	44.198	ENSPNYG00000017381	patl2	61	44.499	Pundamilia_nyererei
ENSRNOG00000017061	Patl2	71	36.675	ENSPNAG00000017907	patl1	56	35.699	Pygocentrus_nattereri
ENSRNOG00000017061	Patl2	76	44.444	ENSPNAG00000002315	patl2	58	44.608	Pygocentrus_nattereri
ENSRNOG00000017061	Patl2	98	65.607	ENSRBIG00000040369	PATL2	95	66.667	Rhinopithecus_bieti
ENSRNOG00000017061	Patl2	98	65.794	ENSRROG00000028786	PATL2	95	66.852	Rhinopithecus_roxellana
ENSRNOG00000017061	Patl2	98	65.421	ENSSBOG00000034766	PATL2	95	66.542	Saimiri_boliviensis_boliviensis
ENSRNOG00000017061	Patl2	73	44.472	ENSSFOG00015000720	patl2	56	44.578	Scleropages_formosus
ENSRNOG00000017061	Patl2	87	40.842	ENSSMAG00000017262	patl2	78	39.479	Scophthalmus_maximus
ENSRNOG00000017061	Patl2	75	42.963	ENSSDUG00000022927	patl2	54	42.718	Seriola_dumerili
ENSRNOG00000017061	Patl2	75	42.327	ENSSLDG00000017922	patl2	59	42.092	Seriola_lalandi_dorsalis
ENSRNOG00000017061	Patl2	94	65.331	ENSSARG00000009047	PATL2	99	65.849	Sorex_araneus
ENSRNOG00000017061	Patl2	61	56.000	ENSSPUG00000019065	PATL2	94	55.856	Sphenodon_punctatus
ENSRNOG00000017061	Patl2	75	40.541	ENSSPAG00000004784	patl2	60	40.580	Stegastes_partitus
ENSRNOG00000017061	Patl2	71	35.550	ENSSSCG00000013124	PATL1	52	36.888	Sus_scrofa
ENSRNOG00000017061	Patl2	73	52.941	ENSTGUG00000004619	-	99	52.685	Taeniopygia_guttata
ENSRNOG00000017061	Patl2	74	43.358	ENSTRUG00000005647	patl2	56	43.243	Takifugu_rubripes
ENSRNOG00000017061	Patl2	63	37.283	ENSTTRG00000009389	PATL1	53	36.994	Tursiops_truncatus
ENSRNOG00000017061	Patl2	98	66.852	ENSUAMG00000018533	PATL2	95	65.688	Ursus_americanus
ENSRNOG00000017061	Patl2	98	67.222	ENSUMAG00000007738	PATL2	95	66.055	Ursus_maritimus
ENSRNOG00000017061	Patl2	76	35.167	ENSUMAG00000018634	PATL1	50	36.311	Ursus_maritimus
ENSRNOG00000017061	Patl2	76	35.646	ENSVVUG00000016668	PATL1	50	36.416	Vulpes_vulpes
ENSRNOG00000017061	Patl2	94	67.311	ENSVVUG00000011576	PATL2	93	65.709	Vulpes_vulpes
ENSRNOG00000017061	Patl2	72	44.675	ENSXETG00000014167	patl2	71	41.855	Xenopus_tropicalis
ENSRNOG00000017061	Patl2	71	36.667	ENSXCOG00000010808	patl1	64	37.293	Xiphophorus_couchianus
ENSRNOG00000017061	Patl2	75	44.444	ENSXMAG00000018464	patl2	55	43.689	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	-	ISO	Component
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0010607	negative regulation of cytoplasmic mRNA processing body assembly	-	IEA	Process
GO:0010607	negative regulation of cytoplasmic mRNA processing body assembly	-	ISO	Process
GO:0033962	cytoplasmic mRNA processing body assembly	21873635.	IBA	Process