EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017310 (Gene tree)
Gene ID: 691538
Gene Symbol: Rnpc3
Alias: LOC686263|LOC691538|MGC188204
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 28392 bases
Position: chr2:216481436-216509827
Accession: 1582776
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000023366	RRM_1	PF00076.22	2.7e-18	1	2
ENSRNOP00000023366	RRM_1	PF00076.22	2.7e-18	2	2
ENSRNOP00000069232	RRM_1	PF00076.22	2.7e-18	1	2
ENSRNOP00000069232	RRM_1	PF00076.22	2.7e-18	2	2
ENSRNOP00000070327	RRM_1	PF00076.22	2.7e-18	1	2
ENSRNOP00000070327	RRM_1	PF00076.22	2.7e-18	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000023366	-	1548	-	ENSRNOP00000023366	515 (aa)	-	Q4G055
ENSRNOT00000088533	-	1964	-	ENSRNOP00000070327	515 (aa)	-	Q4G055
ENSRNOT00000087714	-	1789	XM_006233211	ENSRNOP00000069232	515 (aa)	XP_006233273	Q4G055

Gene Model

Click here to download ENSRNOG00000017310's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017310's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017310	Rnpc3	100	88.350	ENSG00000185946	RNPC3	100	89.189	Homo_sapiens
ENSRNOG00000017310	Rnpc3	95	56.619	ENSAPOG00000017371	rnpc3	97	56.619	Acanthochromis_polyacanthus
ENSRNOG00000017310	Rnpc3	98	88.386	ENSAMEG00000001694	RNPC3	99	87.476	Ailuropoda_melanoleuca
ENSRNOG00000017310	Rnpc3	95	53.082	ENSACIG00000021043	rnpc3	97	53.082	Amphilophus_citrinellus
ENSRNOG00000017310	Rnpc3	95	56.627	ENSAOCG00000014052	rnpc3	95	56.426	Amphiprion_ocellaris
ENSRNOG00000017310	Rnpc3	95	56.426	ENSAPEG00000008739	rnpc3	95	56.225	Amphiprion_percula
ENSRNOG00000017310	Rnpc3	95	54.400	ENSATEG00000021263	rnpc3	97	54.400	Anabas_testudineus
ENSRNOG00000017310	Rnpc3	88	68.062	ENSAPLG00000015605	RNPC3	99	67.181	Anas_platyrhynchos
ENSRNOG00000017310	Rnpc3	95	67.276	ENSACAG00000002029	RNPC3	96	67.335	Anolis_carolinensis
ENSRNOG00000017310	Rnpc3	100	87.597	ENSANAG00000019950	RNPC3	99	87.597	Aotus_nancymaae
ENSRNOG00000017310	Rnpc3	95	54.268	ENSACLG00000014702	rnpc3	96	54.065	Astatotilapia_calliptera
ENSRNOG00000017310	Rnpc3	95	58.097	ENSAMXG00000033372	rnpc3	96	58.097	Astyanax_mexicanus
ENSRNOG00000017310	Rnpc3	100	87.961	ENSBTAG00000019091	RNPC3	99	87.961	Bos_taurus
ENSRNOG00000017310	Rnpc3	100	83.140	ENSCJAG00000035686	RNPC3	99	83.527	Callithrix_jacchus
ENSRNOG00000017310	Rnpc3	100	87.234	ENSCAFG00000019972	RNPC3	99	87.234	Canis_familiaris
ENSRNOG00000017310	Rnpc3	100	87.427	ENSCAFG00020011300	RNPC3	99	87.427	Canis_lupus_dingo
ENSRNOG00000017310	Rnpc3	100	87.791	ENSCHIG00000020361	RNPC3	99	87.791	Capra_hircus
ENSRNOG00000017310	Rnpc3	100	86.214	ENSTSYG00000030256	RNPC3	99	86.214	Carlito_syrichta
ENSRNOG00000017310	Rnpc3	84	75.402	ENSCAPG00000013600	RNPC3	97	72.036	Cavia_aperea
ENSRNOG00000017310	Rnpc3	100	86.434	ENSCPOG00000031638	RNPC3	99	86.434	Cavia_porcellus
ENSRNOG00000017310	Rnpc3	100	87.984	ENSCCAG00000024301	RNPC3	99	87.984	Cebus_capucinus
ENSRNOG00000017310	Rnpc3	99	87.767	ENSCATG00000002086	RNPC3	99	87.767	Cercocebus_atys
ENSRNOG00000017310	Rnpc3	98	67.327	ENSCATG00000035930	-	98	65.680	Cercocebus_atys
ENSRNOG00000017310	Rnpc3	100	84.854	ENSCLAG00000005169	RNPC3	99	85.825	Chinchilla_lanigera
ENSRNOG00000017310	Rnpc3	99	87.573	ENSCSAG00000001519	RNPC3	99	87.573	Chlorocebus_sabaeus
ENSRNOG00000017310	Rnpc3	100	66.923	ENSCPBG00000028311	RNPC3	99	66.923	Chrysemys_picta_bellii
ENSRNOG00000017310	Rnpc3	95	37.200	ENSCING00000021276	-	98	37.323	Ciona_intestinalis
ENSRNOG00000017310	Rnpc3	99	87.573	ENSCANG00000031444	RNPC3	99	87.573	Colobus_angolensis_palliatus
ENSRNOG00000017310	Rnpc3	100	93.204	ENSCGRG00001019276	Rnpc3	100	93.204	Cricetulus_griseus_chok1gshd
ENSRNOG00000017310	Rnpc3	88	93.348	ENSCGRG00000000053	Rnpc3	100	93.348	Cricetulus_griseus_crigri
ENSRNOG00000017310	Rnpc3	94	54.786	ENSCSEG00000013475	rnpc3	96	54.786	Cynoglossus_semilaevis
ENSRNOG00000017310	Rnpc3	94	55.090	ENSCVAG00000002645	rnpc3	97	54.762	Cyprinodon_variegatus
ENSRNOG00000017310	Rnpc3	95	56.349	ENSDARG00000011247	rnpc3	93	63.584	Danio_rerio
ENSRNOG00000017310	Rnpc3	100	86.408	ENSDNOG00000047498	-	99	86.408	Dasypus_novemcinctus
ENSRNOG00000017310	Rnpc3	100	86.408	ENSDNOG00000044555	-	99	86.408	Dasypus_novemcinctus
ENSRNOG00000017310	Rnpc3	100	86.240	ENSDORG00000027343	Rnpc3	99	86.240	Dipodomys_ordii
ENSRNOG00000017310	Rnpc3	95	47.563	ENSEBUG00000002068	rnpc3	97	48.235	Eptatretus_burgeri
ENSRNOG00000017310	Rnpc3	100	87.234	ENSEASG00005015957	RNPC3	99	87.234	Equus_asinus_asinus
ENSRNOG00000017310	Rnpc3	100	87.427	ENSECAG00000021148	RNPC3	99	87.427	Equus_caballus
ENSRNOG00000017310	Rnpc3	95	54.883	ENSELUG00000002264	rnpc3	97	55.469	Esox_lucius
ENSRNOG00000017310	Rnpc3	100	87.597	ENSFCAG00000024312	RNPC3	99	87.597	Felis_catus
ENSRNOG00000017310	Rnpc3	88	69.824	ENSFALG00000002580	RNPC3	99	71.292	Ficedula_albicollis
ENSRNOG00000017310	Rnpc3	100	87.209	ENSFDAG00000019948	RNPC3	100	87.209	Fukomys_damarensis
ENSRNOG00000017310	Rnpc3	96	51.815	ENSFHEG00000020647	rnpc3	98	50.392	Fundulus_heteroclitus
ENSRNOG00000017310	Rnpc3	95	53.722	ENSGMOG00000019213	rnpc3	95	52.846	Gadus_morhua
ENSRNOG00000017310	Rnpc3	97	68.577	ENSGALG00000005162	RNPC3	89	68.081	Gallus_gallus
ENSRNOG00000017310	Rnpc3	95	54.200	ENSGAFG00000017236	rnpc3	96	54.200	Gambusia_affinis
ENSRNOG00000017310	Rnpc3	95	55.215	ENSGACG00000002048	rnpc3	96	54.691	Gasterosteus_aculeatus
ENSRNOG00000017310	Rnpc3	96	68.612	ENSGAGG00000008438	RNPC3	96	67.913	Gopherus_agassizii
ENSRNOG00000017310	Rnpc3	99	72.093	ENSGGOG00000026201	-	99	72.093	Gorilla_gorilla
ENSRNOG00000017310	Rnpc3	78	78.947	ENSHBUG00000015966	rnpc3	82	78.947	Haplochromis_burtoni
ENSRNOG00000017310	Rnpc3	100	86.822	ENSHGLG00000001708	RNPC3	99	86.822	Heterocephalus_glaber_female
ENSRNOG00000017310	Rnpc3	100	86.822	ENSHGLG00100003005	RNPC3	99	86.822	Heterocephalus_glaber_male
ENSRNOG00000017310	Rnpc3	95	55.242	ENSHCOG00000017135	rnpc3	97	55.242	Hippocampus_comes
ENSRNOG00000017310	Rnpc3	95	55.888	ENSIPUG00000002916	rnpc3	97	55.888	Ictalurus_punctatus
ENSRNOG00000017310	Rnpc3	100	87.403	ENSSTOG00000025020	RNPC3	99	87.403	Ictidomys_tridecemlineatus
ENSRNOG00000017310	Rnpc3	100	84.302	ENSJJAG00000010203	Rnpc3	100	85.465	Jaculus_jaculus
ENSRNOG00000017310	Rnpc3	95	54.158	ENSKMAG00000017358	rnpc3	97	51.984	Kryptolebias_marmoratus
ENSRNOG00000017310	Rnpc3	95	55.556	ENSLBEG00000024901	rnpc3	95	55.556	Labrus_bergylta
ENSRNOG00000017310	Rnpc3	95	62.602	ENSLACG00000005720	RNPC3	90	62.398	Latimeria_chalumnae
ENSRNOG00000017310	Rnpc3	95	58.045	ENSLOCG00000007986	rnpc3	96	59.674	Lepisosteus_oculatus
ENSRNOG00000017310	Rnpc3	100	86.434	ENSLAFG00000032342	RNPC3	100	86.434	Loxodonta_africana
ENSRNOG00000017310	Rnpc3	99	87.573	ENSMFAG00000002004	RNPC3	99	87.573	Macaca_fascicularis
ENSRNOG00000017310	Rnpc3	99	64.147	ENSMFAG00000002917	-	99	65.310	Macaca_fascicularis
ENSRNOG00000017310	Rnpc3	83	81.308	ENSMMUG00000002098	-	92	81.308	Macaca_mulatta
ENSRNOG00000017310	Rnpc3	99	87.573	ENSMMUG00000018039	RNPC3	99	87.573	Macaca_mulatta
ENSRNOG00000017310	Rnpc3	99	82.718	ENSMNEG00000033950	RNPC3	99	82.718	Macaca_nemestrina
ENSRNOG00000017310	Rnpc3	77	69.192	ENSMNEG00000029209	-	98	64.764	Macaca_nemestrina
ENSRNOG00000017310	Rnpc3	99	87.767	ENSMLEG00000033628	RNPC3	99	87.767	Mandrillus_leucophaeus
ENSRNOG00000017310	Rnpc3	98	66.732	ENSMLEG00000034644	-	98	66.341	Mandrillus_leucophaeus
ENSRNOG00000017310	Rnpc3	95	51.303	ENSMAMG00000007496	rnpc3	97	48.538	Mastacembelus_armatus
ENSRNOG00000017310	Rnpc3	95	53.586	ENSMZEG00005020233	rnpc3	97	53.586	Maylandia_zebra
ENSRNOG00000017310	Rnpc3	88	68.571	ENSMGAG00000006381	RNPC3	99	67.912	Meleagris_gallopavo
ENSRNOG00000017310	Rnpc3	97	94.378	ENSMAUG00000001358	Rnpc3	100	93.592	Mesocricetus_auratus
ENSRNOG00000017310	Rnpc3	100	88.566	ENSMICG00000029591	RNPC3	99	88.566	Microcebus_murinus
ENSRNOG00000017310	Rnpc3	97	92.184	ENSMOCG00000013423	Rnpc3	100	91.296	Microtus_ochrogaster
ENSRNOG00000017310	Rnpc3	95	52.121	ENSMMOG00000005309	rnpc3	97	50.898	Mola_mola
ENSRNOG00000017310	Rnpc3	100	75.969	ENSMODG00000002946	RNPC3	99	75.969	Monodelphis_domestica
ENSRNOG00000017310	Rnpc3	95	52.716	ENSMALG00000015471	rnpc3	97	52.906	Monopterus_albus
ENSRNOG00000017310	Rnpc3	100	94.369	MGP_CAROLIEiJ_G0025555	Rnpc3	100	94.685	Mus_caroli
ENSRNOG00000017310	Rnpc3	100	94.369	ENSMUSG00000027981	Rnpc3	100	94.369	Mus_musculus
ENSRNOG00000017310	Rnpc3	100	94.563	MGP_PahariEiJ_G0027001	Rnpc3	100	94.882	Mus_pahari
ENSRNOG00000017310	Rnpc3	100	94.563	MGP_SPRETEiJ_G0026505	Rnpc3	100	94.882	Mus_spretus
ENSRNOG00000017310	Rnpc3	100	87.597	ENSMPUG00000007349	RNPC3	99	87.597	Mustela_putorius_furo
ENSRNOG00000017310	Rnpc3	100	85.659	ENSMLUG00000028743	RNPC3	99	85.659	Myotis_lucifugus
ENSRNOG00000017310	Rnpc3	99	90.039	ENSNGAG00000010939	Rnpc3	99	90.039	Nannospalax_galili
ENSRNOG00000017310	Rnpc3	95	54.065	ENSNBRG00000012196	rnpc3	93	54.065	Neolamprologus_brichardi
ENSRNOG00000017310	Rnpc3	100	88.155	ENSNLEG00000012013	RNPC3	99	88.155	Nomascus_leucogenys
ENSRNOG00000017310	Rnpc3	100	84.272	ENSODEG00000007612	RNPC3	99	84.272	Octodon_degus
ENSRNOG00000017310	Rnpc3	95	54.786	ENSONIG00000004770	rnpc3	99	54.786	Oreochromis_niloticus
ENSRNOG00000017310	Rnpc3	90	74.839	ENSOANG00000008220	RNPC3	99	75.054	Ornithorhynchus_anatinus
ENSRNOG00000017310	Rnpc3	100	87.209	ENSOCUG00000004016	RNPC3	99	87.209	Oryctolagus_cuniculus
ENSRNOG00000017310	Rnpc3	95	52.906	ENSORLG00000005694	rnpc3	97	53.131	Oryzias_latipes
ENSRNOG00000017310	Rnpc3	95	53.707	ENSORLG00020005513	rnpc3	97	53.939	Oryzias_latipes_hni
ENSRNOG00000017310	Rnpc3	95	53.106	ENSORLG00015002179	rnpc3	97	53.333	Oryzias_latipes_hsok
ENSRNOG00000017310	Rnpc3	95	53.939	ENSOMEG00000017737	rnpc3	97	53.737	Oryzias_melastigma
ENSRNOG00000017310	Rnpc3	100	87.984	ENSOGAG00000026182	RNPC3	99	87.984	Otolemur_garnettii
ENSRNOG00000017310	Rnpc3	100	87.597	ENSOARG00000018719	RNPC3	99	87.597	Ovis_aries
ENSRNOG00000017310	Rnpc3	99	73.062	ENSPPAG00000030278	-	99	73.062	Pan_paniscus
ENSRNOG00000017310	Rnpc3	100	87.814	ENSPPAG00000037459	RNPC3	99	87.814	Pan_paniscus
ENSRNOG00000017310	Rnpc3	100	87.597	ENSPPRG00000020246	RNPC3	99	87.597	Panthera_pardus
ENSRNOG00000017310	Rnpc3	98	88.142	ENSPTIG00000009887	RNPC3	99	88.142	Panthera_tigris_altaica
ENSRNOG00000017310	Rnpc3	100	87.984	ENSPTRG00000033902	RNPC3	99	87.984	Pan_troglodytes
ENSRNOG00000017310	Rnpc3	98	72.189	ENSPTRG00000044227	-	98	72.189	Pan_troglodytes
ENSRNOG00000017310	Rnpc3	98	69.685	ENSPANG00000029957	-	99	68.235	Papio_anubis
ENSRNOG00000017310	Rnpc3	99	87.938	ENSPANG00000012137	RNPC3	99	87.938	Papio_anubis
ENSRNOG00000017310	Rnpc3	94	51.837	ENSPKIG00000008828	rnpc3	95	54.175	Paramormyrops_kingsleyae
ENSRNOG00000017310	Rnpc3	63	67.674	ENSPSIG00000007396	RNPC3	99	67.372	Pelodiscus_sinensis
ENSRNOG00000017310	Rnpc3	93	51.527	ENSPMGG00000011742	rnpc3	95	52.138	Periophthalmus_magnuspinnatus
ENSRNOG00000017310	Rnpc3	89	92.105	ENSPEMG00000020112	Rnpc3	100	92.905	Peromyscus_maniculatus_bairdii
ENSRNOG00000017310	Rnpc3	96	44.841	ENSPMAG00000003778	rnpc3	50	48.507	Petromyzon_marinus
ENSRNOG00000017310	Rnpc3	100	76.938	ENSPCIG00000004415	-	99	76.938	Phascolarctos_cinereus
ENSRNOG00000017310	Rnpc3	95	54.016	ENSPFOG00000009895	rnpc3	97	54.016	Poecilia_formosa
ENSRNOG00000017310	Rnpc3	95	53.427	ENSPLAG00000012023	rnpc3	97	53.427	Poecilia_latipinna
ENSRNOG00000017310	Rnpc3	95	54.217	ENSPMEG00000003663	rnpc3	97	54.217	Poecilia_mexicana
ENSRNOG00000017310	Rnpc3	96	53.386	ENSPREG00000010206	rnpc3	97	53.908	Poecilia_reticulata
ENSRNOG00000017310	Rnpc3	84	83.871	ENSPPYG00000001102	RNPC3	99	83.871	Pongo_abelii
ENSRNOG00000017310	Rnpc3	95	54.065	ENSPNYG00000020603	rnpc3	96	53.862	Pundamilia_nyererei
ENSRNOG00000017310	Rnpc3	99	82.558	ENSRBIG00000043897	RNPC3	99	82.558	Rhinopithecus_bieti
ENSRNOG00000017310	Rnpc3	99	88.155	ENSRROG00000032334	RNPC3	99	88.155	Rhinopithecus_roxellana
ENSRNOG00000017310	Rnpc3	100	87.767	ENSSBOG00000024473	RNPC3	98	88.849	Saimiri_boliviensis_boliviensis
ENSRNOG00000017310	Rnpc3	100	76.163	ENSSHAG00000011859	RNPC3	99	76.163	Sarcophilus_harrisii
ENSRNOG00000017310	Rnpc3	96	58.918	ENSSFOG00015013055	rnpc3	99	57.171	Scleropages_formosus
ENSRNOG00000017310	Rnpc3	95	52.600	ENSSMAG00000020346	rnpc3	97	50.874	Scophthalmus_maximus
ENSRNOG00000017310	Rnpc3	95	54.309	ENSSDUG00000006600	rnpc3	96	54.309	Seriola_dumerili
ENSRNOG00000017310	Rnpc3	95	54.309	ENSSLDG00000007979	rnpc3	96	54.309	Seriola_lalandi_dorsalis
ENSRNOG00000017310	Rnpc3	95	70.101	ENSSPUG00000008539	-	96	69.565	Sphenodon_punctatus
ENSRNOG00000017310	Rnpc3	96	65.130	ENSSPUG00000003872	-	92	65.657	Sphenodon_punctatus
ENSRNOG00000017310	Rnpc3	95	55.578	ENSSPAG00000005633	rnpc3	97	52.259	Stegastes_partitus
ENSRNOG00000017310	Rnpc3	100	87.767	ENSSSCG00000037254	RNPC3	99	88.350	Sus_scrofa
ENSRNOG00000017310	Rnpc3	88	69.316	ENSTGUG00000004795	-	99	69.316	Taeniopygia_guttata
ENSRNOG00000017310	Rnpc3	95	54.890	ENSTNIG00000018963	rnpc3	97	54.890	Tetraodon_nigroviridis
ENSRNOG00000017310	Rnpc3	98	88.757	ENSUMAG00000007775	RNPC3	99	88.757	Ursus_maritimus
ENSRNOG00000017310	Rnpc3	100	87.427	ENSVVUG00000000331	RNPC3	99	87.427	Vulpes_vulpes
ENSRNOG00000017310	Rnpc3	97	49.412	ENSXETG00000025027	rnpc3	99	49.412	Xenopus_tropicalis
ENSRNOG00000017310	Rnpc3	95	53.507	ENSXCOG00000005013	rnpc3	97	50.487	Xiphophorus_couchianus
ENSRNOG00000017310	Rnpc3	95	54.000	ENSXMAG00000006495	rnpc3	97	54.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0030626	U12 snRNA binding	21873635.	IBA	Function
GO:0097157	pre-mRNA intronic binding	21873635.	IBA	Function