EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017321 (Gene tree)
Gene ID: 361775
Gene Symbol: Trub1
Alias: LOC361775
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 107093 bases
Position: chr1:278311244-278418336
Accession: 1308502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000023309	TruB_N	PF01509.18	8.8e-52	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000023309	-	3555	XM_008760538	ENSRNOP00000023309	341 (aa)	XP_008758760	Q5M934

Gene Model

Click here to download ENSRNOG00000017321's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017321's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000017321	Trub1	64	31.839	ENSRNOG00000043189	Trub2	64	31.905

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017321	Trub1	99	81.662	ENSG00000165832	TRUB1	99	81.662	Homo_sapiens
ENSRNOG00000017321	Trub1	72	66.939	ENSAPOG00000020565	trub1	91	66.135	Acanthochromis_polyacanthus
ENSRNOG00000017321	Trub1	88	85.479	ENSAMEG00000014931	TRUB1	99	81.481	Ailuropoda_melanoleuca
ENSRNOG00000017321	Trub1	72	60.163	ENSACIG00000003060	trub1	82	60.163	Amphilophus_citrinellus
ENSRNOG00000017321	Trub1	72	66.939	ENSAOCG00000017188	trub1	89	66.667	Amphiprion_ocellaris
ENSRNOG00000017321	Trub1	72	66.260	ENSAPEG00000015209	trub1	89	66.260	Amphiprion_percula
ENSRNOG00000017321	Trub1	71	66.942	ENSATEG00000023291	trub1	87	66.942	Anabas_testudineus
ENSRNOG00000017321	Trub1	80	71.533	ENSAPLG00000006808	TRUB1	98	71.533	Anas_platyrhynchos
ENSRNOG00000017321	Trub1	79	68.635	ENSACAG00000009282	TRUB1	98	68.635	Anolis_carolinensis
ENSRNOG00000017321	Trub1	88	87.333	ENSANAG00000022870	TRUB1	99	81.662	Aotus_nancymaae
ENSRNOG00000017321	Trub1	74	64.683	ENSACLG00000000823	trub1	91	64.683	Astatotilapia_calliptera
ENSRNOG00000017321	Trub1	79	63.060	ENSAMXG00000015845	trub1	89	63.060	Astyanax_mexicanus
ENSRNOG00000017321	Trub1	89	86.424	ENSBTAG00000012955	TRUB1	86	86.424	Bos_taurus
ENSRNOG00000017321	Trub1	99	80.857	ENSCJAG00000047815	TRUB1	99	81.429	Callithrix_jacchus
ENSRNOG00000017321	Trub1	88	86.957	ENSCAFG00000011688	TRUB1	99	82.235	Canis_familiaris
ENSRNOG00000017321	Trub1	88	87.043	ENSCAFG00020013237	TRUB1	99	82.521	Canis_lupus_dingo
ENSRNOG00000017321	Trub1	95	84.000	ENSCHIG00000020884	TRUB1	97	84.000	Capra_hircus
ENSRNOG00000017321	Trub1	88	86.711	ENSTSYG00000000446	TRUB1	99	80.857	Carlito_syrichta
ENSRNOG00000017321	Trub1	74	75.494	ENSCAPG00000017088	TRUB1	99	75.494	Cavia_aperea
ENSRNOG00000017321	Trub1	70	78.333	ENSCPOG00000030129	-	86	77.083	Cavia_porcellus
ENSRNOG00000017321	Trub1	69	77.459	ENSCPOG00000040236	-	100	78.689	Cavia_porcellus
ENSRNOG00000017321	Trub1	88	86.711	ENSCCAG00000028842	TRUB1	99	81.143	Cebus_capucinus
ENSRNOG00000017321	Trub1	99	80.516	ENSCATG00000033431	TRUB1	99	81.662	Cercocebus_atys
ENSRNOG00000017321	Trub1	69	80.328	ENSCLAG00000008664	TRUB1	100	79.098	Chinchilla_lanigera
ENSRNOG00000017321	Trub1	99	80.516	ENSCSAG00000004891	TRUB1	99	81.662	Chlorocebus_sabaeus
ENSRNOG00000017321	Trub1	88	73.667	ENSCHOG00000011931	TRUB1	86	73.841	Choloepus_hoffmanni
ENSRNOG00000017321	Trub1	79	73.801	ENSCPBG00000003051	TRUB1	93	73.801	Chrysemys_picta_bellii
ENSRNOG00000017321	Trub1	99	80.516	ENSCANG00000029445	TRUB1	99	81.662	Colobus_angolensis_palliatus
ENSRNOG00000017321	Trub1	98	71.257	ENSCGRG00001010322	-	86	73.900	Cricetulus_griseus_chok1gshd
ENSRNOG00000017321	Trub1	75	88.627	ENSCGRG00001016772	-	100	75.660	Cricetulus_griseus_chok1gshd
ENSRNOG00000017321	Trub1	82	89.680	ENSCGRG00000010806	Trub1	100	83.284	Cricetulus_griseus_crigri
ENSRNOG00000017321	Trub1	75	60.156	ENSCSEG00000011261	trub1	97	55.150	Cynoglossus_semilaevis
ENSRNOG00000017321	Trub1	78	63.396	ENSCVAG00000008791	trub1	81	63.396	Cyprinodon_variegatus
ENSRNOG00000017321	Trub1	79	63.469	ENSDARG00000053805	trub1	93	63.469	Danio_rerio
ENSRNOG00000017321	Trub1	96	76.647	ENSDNOG00000001069	TRUB1	100	76.068	Dasypus_novemcinctus
ENSRNOG00000017321	Trub1	100	81.214	ENSDORG00000010431	Trub1	87	87.086	Dipodomys_ordii
ENSRNOG00000017321	Trub1	66	86.620	ENSETEG00000009183	TRUB1	65	84.564	Echinops_telfairi
ENSRNOG00000017321	Trub1	88	86.000	ENSEASG00005014739	TRUB1	100	81.714	Equus_asinus_asinus
ENSRNOG00000017321	Trub1	88	86.000	ENSECAG00000007177	TRUB1	100	81.714	Equus_caballus
ENSRNOG00000017321	Trub1	86	74.150	ENSEEUG00000013993	TRUB1	84	73.667	Erinaceus_europaeus
ENSRNOG00000017321	Trub1	78	64.151	ENSELUG00000000502	trub1	91	64.151	Esox_lucius
ENSRNOG00000017321	Trub1	88	86.667	ENSFCAG00000031927	TRUB1	99	82.709	Felis_catus
ENSRNOG00000017321	Trub1	71	72.199	ENSFALG00000002232	TRUB1	93	72.199	Ficedula_albicollis
ENSRNOG00000017321	Trub1	58	90.355	ENSFDAG00000008140	TRUB1	81	90.355	Fukomys_damarensis
ENSRNOG00000017321	Trub1	72	64.634	ENSFHEG00000004016	trub1	85	64.634	Fundulus_heteroclitus
ENSRNOG00000017321	Trub1	79	70.849	ENSGALG00000009091	TRUB1	95	70.849	Gallus_gallus
ENSRNOG00000017321	Trub1	79	59.779	ENSGAFG00000009193	trub1	86	62.857	Gambusia_affinis
ENSRNOG00000017321	Trub1	58	64.824	ENSGACG00000015387	trub1	96	65.641	Gasterosteus_aculeatus
ENSRNOG00000017321	Trub1	90	69.055	ENSGAGG00000009758	TRUB1	81	71.378	Gopherus_agassizii
ENSRNOG00000017321	Trub1	99	81.375	ENSGGOG00000004583	TRUB1	99	81.375	Gorilla_gorilla
ENSRNOG00000017321	Trub1	74	64.683	ENSHBUG00000016787	trub1	91	64.683	Haplochromis_burtoni
ENSRNOG00000017321	Trub1	100	75.000	ENSHGLG00000015314	TRUB1	100	77.364	Heterocephalus_glaber_female
ENSRNOG00000017321	Trub1	69	80.591	ENSHGLG00100009183	TRUB1	100	80.591	Heterocephalus_glaber_male
ENSRNOG00000017321	Trub1	72	65.306	ENSHCOG00000017877	trub1	89	65.306	Hippocampus_comes
ENSRNOG00000017321	Trub1	81	63.636	ENSIPUG00000017559	trub1	96	63.636	Ictalurus_punctatus
ENSRNOG00000017321	Trub1	89	85.430	ENSSTOG00000003641	TRUB1	100	80.175	Ictidomys_tridecemlineatus
ENSRNOG00000017321	Trub1	100	80.645	ENSJJAG00000011800	Trub1	100	80.645	Jaculus_jaculus
ENSRNOG00000017321	Trub1	74	63.424	ENSKMAG00000006232	trub1	92	63.424	Kryptolebias_marmoratus
ENSRNOG00000017321	Trub1	78	62.030	ENSLBEG00000026722	trub1	92	62.030	Labrus_bergylta
ENSRNOG00000017321	Trub1	80	70.073	ENSLACG00000014885	TRUB1	92	70.073	Latimeria_chalumnae
ENSRNOG00000017321	Trub1	80	67.766	ENSLOCG00000012979	trub1	93	67.766	Lepisosteus_oculatus
ENSRNOG00000017321	Trub1	99	74.000	ENSLAFG00000015452	TRUB1	99	74.432	Loxodonta_africana
ENSRNOG00000017321	Trub1	99	80.802	ENSMFAG00000031767	TRUB1	99	81.948	Macaca_fascicularis
ENSRNOG00000017321	Trub1	99	80.516	ENSMMUG00000001902	TRUB1	99	81.662	Macaca_mulatta
ENSRNOG00000017321	Trub1	99	76.218	ENSMNEG00000044646	TRUB1	99	77.364	Macaca_nemestrina
ENSRNOG00000017321	Trub1	99	80.802	ENSMLEG00000042655	TRUB1	99	81.662	Mandrillus_leucophaeus
ENSRNOG00000017321	Trub1	74	64.683	ENSMZEG00005024095	trub1	91	64.683	Maylandia_zebra
ENSRNOG00000017321	Trub1	79	71.481	ENSMGAG00000011135	TRUB1	93	71.481	Meleagris_gallopavo
ENSRNOG00000017321	Trub1	88	86.957	ENSMAUG00000011101	Trub1	100	82.405	Mesocricetus_auratus
ENSRNOG00000017321	Trub1	100	80.516	ENSMICG00000016324	TRUB1	100	82.235	Microcebus_murinus
ENSRNOG00000017321	Trub1	100	83.578	ENSMOCG00000017759	Trub1	100	82.991	Microtus_ochrogaster
ENSRNOG00000017321	Trub1	79	82.463	ENSMODG00000009676	TRUB1	77	80.935	Monodelphis_domestica
ENSRNOG00000017321	Trub1	100	90.616	MGP_CAROLIEiJ_G0023100	Trub1	100	91.496	Mus_caroli
ENSRNOG00000017321	Trub1	100	90.029	ENSMUSG00000025086	Trub1	100	90.909	Mus_musculus
ENSRNOG00000017321	Trub1	100	90.909	MGP_PahariEiJ_G0014588	Trub1	100	91.789	Mus_pahari
ENSRNOG00000017321	Trub1	100	90.323	MGP_SPRETEiJ_G0024021	Trub1	100	91.202	Mus_spretus
ENSRNOG00000017321	Trub1	88	87.708	ENSMPUG00000003556	TRUB1	99	82.235	Mustela_putorius_furo
ENSRNOG00000017321	Trub1	95	82.353	ENSMLUG00000017686	TRUB1	99	78.551	Myotis_lucifugus
ENSRNOG00000017321	Trub1	100	80.460	ENSNGAG00000018682	Trub1	100	80.747	Nannospalax_galili
ENSRNOG00000017321	Trub1	72	65.447	ENSNBRG00000023393	trub1	88	65.447	Neolamprologus_brichardi
ENSRNOG00000017321	Trub1	88	86.288	ENSNLEG00000016345	TRUB1	99	81.375	Nomascus_leucogenys
ENSRNOG00000017321	Trub1	59	87.562	ENSMEUG00000006603	TRUB1	78	85.308	Notamacropus_eugenii
ENSRNOG00000017321	Trub1	89	80.132	ENSOPRG00000009371	TRUB1	100	76.163	Ochotona_princeps
ENSRNOG00000017321	Trub1	100	75.358	ENSODEG00000010854	TRUB1	86	81.000	Octodon_degus
ENSRNOG00000017321	Trub1	76	63.320	ENSONIG00000007249	trub1	94	63.320	Oreochromis_niloticus
ENSRNOG00000017321	Trub1	80	76.190	ENSOANG00000001556	TRUB1	93	74.468	Ornithorhynchus_anatinus
ENSRNOG00000017321	Trub1	89	81.788	ENSOCUG00000009456	TRUB1	100	76.301	Oryctolagus_cuniculus
ENSRNOG00000017321	Trub1	71	66.255	ENSORLG00000029719	trub1	87	66.529	Oryzias_latipes
ENSRNOG00000017321	Trub1	71	65.844	ENSORLG00020016767	trub1	86	66.116	Oryzias_latipes_hni
ENSRNOG00000017321	Trub1	71	66.255	ENSORLG00015014728	trub1	87	66.529	Oryzias_latipes_hsok
ENSRNOG00000017321	Trub1	77	64.122	ENSOMEG00000014556	trub1	85	66.667	Oryzias_melastigma
ENSRNOG00000017321	Trub1	89	87.417	ENSOGAG00000015895	TRUB1	100	82.286	Otolemur_garnettii
ENSRNOG00000017321	Trub1	87	84.488	ENSOARG00000015591	TRUB1	100	79.545	Ovis_aries
ENSRNOG00000017321	Trub1	99	81.662	ENSPPAG00000043645	TRUB1	99	81.662	Pan_paniscus
ENSRNOG00000017321	Trub1	88	86.333	ENSPPRG00000007096	TRUB1	99	81.844	Panthera_pardus
ENSRNOG00000017321	Trub1	88	86.667	ENSPTIG00000006378	TRUB1	99	82.133	Panthera_tigris_altaica
ENSRNOG00000017321	Trub1	99	81.662	ENSPTRG00000002964	TRUB1	99	81.662	Pan_troglodytes
ENSRNOG00000017321	Trub1	99	80.229	ENSPANG00000020712	TRUB1	99	81.375	Papio_anubis
ENSRNOG00000017321	Trub1	51	67.630	ENSPKIG00000003852	trub1	74	67.630	Paramormyrops_kingsleyae
ENSRNOG00000017321	Trub1	83	70.567	ENSPSIG00000012877	TRUB1	97	70.567	Pelodiscus_sinensis
ENSRNOG00000017321	Trub1	78	60.526	ENSPMGG00000000075	trub1	95	60.526	Periophthalmus_magnuspinnatus
ENSRNOG00000017321	Trub1	100	82.698	ENSPEMG00000011156	Trub1	100	82.698	Peromyscus_maniculatus_bairdii
ENSRNOG00000017321	Trub1	84	78.671	ENSPCIG00000009729	TRUB1	79	78.082	Phascolarctos_cinereus
ENSRNOG00000017321	Trub1	74	64.286	ENSPFOG00000009950	trub1	91	64.286	Poecilia_formosa
ENSRNOG00000017321	Trub1	82	60.573	ENSPLAG00000013855	trub1	87	64.286	Poecilia_latipinna
ENSRNOG00000017321	Trub1	74	64.286	ENSPMEG00000009064	trub1	90	64.286	Poecilia_mexicana
ENSRNOG00000017321	Trub1	74	64.683	ENSPREG00000003343	trub1	90	64.683	Poecilia_reticulata
ENSRNOG00000017321	Trub1	96	81.845	ENSPPYG00000002676	TRUB1	99	81.089	Pongo_abelii
ENSRNOG00000017321	Trub1	88	75.333	ENSPCAG00000008427	TRUB1	99	69.602	Procavia_capensis
ENSRNOG00000017321	Trub1	89	81.126	ENSPCOG00000024360	TRUB1	100	76.791	Propithecus_coquereli
ENSRNOG00000017321	Trub1	62	91.509	ENSPVAG00000007575	TRUB1	100	84.791	Pteropus_vampyrus
ENSRNOG00000017321	Trub1	74	64.683	ENSPNYG00000018614	trub1	91	64.683	Pundamilia_nyererei
ENSRNOG00000017321	Trub1	82	55.124	ENSPNAG00000006881	trub1	93	55.124	Pygocentrus_nattereri
ENSRNOG00000017321	Trub1	99	71.347	ENSRBIG00000033423	TRUB1	99	72.779	Rhinopithecus_bieti
ENSRNOG00000017321	Trub1	99	80.802	ENSRROG00000033902	TRUB1	99	82.235	Rhinopithecus_roxellana
ENSRNOG00000017321	Trub1	96	82.738	ENSSBOG00000024237	TRUB1	99	81.429	Saimiri_boliviensis_boliviensis
ENSRNOG00000017321	Trub1	74	76.562	ENSSHAG00000009346	TRUB1	86	76.562	Sarcophilus_harrisii
ENSRNOG00000017321	Trub1	79	63.197	ENSSFOG00015022124	trub1	83	67.490	Scleropages_formosus
ENSRNOG00000017321	Trub1	72	65.447	ENSSMAG00000001020	trub1	88	65.447	Scophthalmus_maximus
ENSRNOG00000017321	Trub1	70	66.250	ENSSDUG00000016414	trub1	88	66.260	Seriola_dumerili
ENSRNOG00000017321	Trub1	70	66.667	ENSSLDG00000015486	trub1	88	66.667	Seriola_lalandi_dorsalis
ENSRNOG00000017321	Trub1	82	73.477	ENSSPUG00000001642	TRUB1	96	73.477	Sphenodon_punctatus
ENSRNOG00000017321	Trub1	72	67.073	ENSSPAG00000001217	trub1	92	65.251	Stegastes_partitus
ENSRNOG00000017321	Trub1	100	77.714	ENSSSCG00000010653	TRUB1	100	77.714	Sus_scrofa
ENSRNOG00000017321	Trub1	79	72.119	ENSTGUG00000010971	TRUB1	96	71.956	Taeniopygia_guttata
ENSRNOG00000017321	Trub1	74	73.123	ENSTBEG00000002880	TRUB1	99	73.123	Tupaia_belangeri
ENSRNOG00000017321	Trub1	63	91.667	ENSTTRG00000005767	TRUB1	100	83.588	Tursiops_truncatus
ENSRNOG00000017321	Trub1	88	87.708	ENSUAMG00000024876	TRUB1	99	83.095	Ursus_americanus
ENSRNOG00000017321	Trub1	87	88.136	ENSUMAG00000002411	TRUB1	99	81.977	Ursus_maritimus
ENSRNOG00000017321	Trub1	89	86.093	ENSVPAG00000005507	TRUB1	100	80.571	Vicugna_pacos
ENSRNOG00000017321	Trub1	87	87.500	ENSVVUG00000010085	TRUB1	83	83.237	Vulpes_vulpes
ENSRNOG00000017321	Trub1	80	63.971	ENSXETG00000023828	trub1	98	63.971	Xenopus_tropicalis
ENSRNOG00000017321	Trub1	72	63.525	ENSXCOG00000017847	trub1	86	63.525	Xiphophorus_couchianus
ENSRNOG00000017321	Trub1	74	63.492	ENSXMAG00000014701	trub1	90	63.492	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005829	cytosol	-	ISS	Component
GO:0006400	tRNA modification	21873635.	IBA	Process
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	-	ISO	Function
GO:0009982	pseudouridine synthase activity	-	ISS	Function
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process
GO:1990481	mRNA pseudouridine synthesis	-	ISO	Process
GO:1990481	mRNA pseudouridine synthesis	-	ISS	Process