EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017397 (Gene tree)
Gene ID: 361176
Gene Symbol: Upf3a
Alias: LOC361176
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 11448 bases
Position: chr16:81521073-81532520
Accession: 1308778
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000060194	Smg4_UPF3	PF03467.15	2.6e-49	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000066521	-	1521	-	ENSRNOP00000060194	405 (aa)	-	Q5I0C8

Gene Model

Click here to download ENSRNOG00000017397's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017397's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017397	Upf3a	98	71.220	ENSG00000169062	UPF3A	99	71.154	Homo_sapiens
ENSRNOG00000017397	Upf3a	90	70.757	ENSAMEG00000004259	UPF3A	84	70.757	Ailuropoda_melanoleuca
ENSRNOG00000017397	Upf3a	81	63.253	ENSACIG00000020468	upf3a	70	79.048	Amphilophus_citrinellus
ENSRNOG00000017397	Upf3a	81	63.444	ENSAOCG00000020784	upf3a	71	63.444	Amphiprion_ocellaris
ENSRNOG00000017397	Upf3a	81	63.444	ENSAPEG00000003519	upf3a	71	63.444	Amphiprion_percula
ENSRNOG00000017397	Upf3a	83	62.832	ENSATEG00000005843	upf3a	73	62.832	Anabas_testudineus
ENSRNOG00000017397	Upf3a	79	69.394	ENSACAG00000001540	UPF3A	80	69.394	Anolis_carolinensis
ENSRNOG00000017397	Upf3a	97	67.647	ENSANAG00000021713	UPF3A	86	67.892	Aotus_nancymaae
ENSRNOG00000017397	Upf3a	82	62.575	ENSAMXG00000002608	upf3a	73	62.575	Astyanax_mexicanus
ENSRNOG00000017397	Upf3a	51	78.947	ENSBTAG00000047365	-	95	79.904	Bos_taurus
ENSRNOG00000017397	Upf3a	94	66.835	ENSCJAG00000019102	UPF3A	86	68.305	Callithrix_jacchus
ENSRNOG00000017397	Upf3a	97	70.316	ENSCAFG00000006504	UPF3A	88	70.146	Canis_familiaris
ENSRNOG00000017397	Upf3a	97	70.560	ENSCAFG00020014268	UPF3A	86	70.388	Canis_lupus_dingo
ENSRNOG00000017397	Upf3a	98	67.237	ENSCHIG00000008682	UPF3A	81	67.647	Capra_hircus
ENSRNOG00000017397	Upf3a	71	66.221	ENSTSYG00000001918	UPF3A	80	65.993	Carlito_syrichta
ENSRNOG00000017397	Upf3a	100	66.826	ENSCPOG00000006824	UPF3A	97	66.826	Cavia_porcellus
ENSRNOG00000017397	Upf3a	98	68.841	ENSCCAG00000018406	UPF3A	88	68.916	Cebus_capucinus
ENSRNOG00000017397	Upf3a	98	71.571	ENSCATG00000029733	UPF3A	86	71.571	Cercocebus_atys
ENSRNOG00000017397	Upf3a	97	70.896	ENSCSAG00000017388	UPF3A	85	70.896	Chlorocebus_sabaeus
ENSRNOG00000017397	Upf3a	97	85.354	ENSCGRG00001017387	Upf3a	94	85.354	Cricetulus_griseus_chok1gshd
ENSRNOG00000017397	Upf3a	56	62.712	ENSCGRG00000007627	Upf3b	56	62.712	Cricetulus_griseus_crigri
ENSRNOG00000017397	Upf3a	97	84.848	ENSCGRG00000001468	Upf3a	94	84.848	Cricetulus_griseus_crigri
ENSRNOG00000017397	Upf3a	81	60.231	ENSCSEG00000005106	upf3a	72	63.142	Cynoglossus_semilaevis
ENSRNOG00000017397	Upf3a	56	62.605	ENSCSEG00000002046	upf3b	52	62.000	Cynoglossus_semilaevis
ENSRNOG00000017397	Upf3a	81	63.333	ENSCVAG00000022333	upf3a	71	63.333	Cyprinodon_variegatus
ENSRNOG00000017397	Upf3a	59	61.600	ENSDARG00000000489	upf3b	54	61.176	Danio_rerio
ENSRNOG00000017397	Upf3a	83	58.166	ENSDARG00000069297	upf3a	75	60.177	Danio_rerio
ENSRNOG00000017397	Upf3a	90	70.185	ENSDNOG00000034391	UPF3A	94	67.874	Dasypus_novemcinctus
ENSRNOG00000017397	Upf3a	93	59.439	ENSETEG00000010110	UPF3A	85	59.804	Echinops_telfairi
ENSRNOG00000017397	Upf3a	99	69.194	ENSEASG00005021884	UPF3A	86	69.194	Equus_asinus_asinus
ENSRNOG00000017397	Upf3a	95	68.983	ENSECAG00000017141	UPF3A	86	69.194	Equus_caballus
ENSRNOG00000017397	Upf3a	54	63.203	ENSELUG00000020389	upf3b	50	62.753	Esox_lucius
ENSRNOG00000017397	Upf3a	80	62.500	ENSELUG00000011050	upf3a	71	62.048	Esox_lucius
ENSRNOG00000017397	Upf3a	92	70.284	ENSFCAG00000014602	UPF3A	85	70.690	Felis_catus
ENSRNOG00000017397	Upf3a	59	53.414	ENSGMOG00000001621	upf3b	52	59.839	Gadus_morhua
ENSRNOG00000017397	Upf3a	78	60.736	ENSGMOG00000019615	upf3a	100	60.241	Gadus_morhua
ENSRNOG00000017397	Upf3a	81	63.939	ENSGAFG00000021170	upf3a	71	63.939	Gambusia_affinis
ENSRNOG00000017397	Upf3a	78	62.776	ENSGACG00000001972	upf3a	100	61.994	Gasterosteus_aculeatus
ENSRNOG00000017397	Upf3a	58	60.569	ENSGACG00000017435	upf3b	77	65.581	Gasterosteus_aculeatus
ENSRNOG00000017397	Upf3a	98	71.220	ENSGGOG00000015428	UPF3A	86	71.463	Gorilla_gorilla
ENSRNOG00000017397	Upf3a	98	54.839	ENSGGOG00000043074	-	85	54.342	Gorilla_gorilla
ENSRNOG00000017397	Upf3a	89	57.373	ENSGGOG00000041219	-	77	59.943	Gorilla_gorilla
ENSRNOG00000017397	Upf3a	99	69.287	ENSHGLG00000001544	UPF3A	96	69.287	Heterocephalus_glaber_female
ENSRNOG00000017397	Upf3a	99	69.287	ENSHGLG00100013244	UPF3A	96	69.287	Heterocephalus_glaber_male
ENSRNOG00000017397	Upf3a	59	61.789	ENSHCOG00000017004	upf3b	53	61.789	Hippocampus_comes
ENSRNOG00000017397	Upf3a	58	64.372	ENSIPUG00000019249	upf3b	58	63.922	Ictalurus_punctatus
ENSRNOG00000017397	Upf3a	82	62.687	ENSIPUG00000023450	upf3a	73	62.687	Ictalurus_punctatus
ENSRNOG00000017397	Upf3a	57	75.652	ENSSTOG00000030282	-	95	76.549	Ictidomys_tridecemlineatus
ENSRNOG00000017397	Upf3a	51	84.135	ENSJJAG00000018099	-	98	84.135	Jaculus_jaculus
ENSRNOG00000017397	Upf3a	81	62.952	ENSKMAG00000004381	upf3a	71	62.952	Kryptolebias_marmoratus
ENSRNOG00000017397	Upf3a	81	55.758	ENSLBEG00000021570	upf3a	72	55.287	Labrus_bergylta
ENSRNOG00000017397	Upf3a	60	59.449	ENSLBEG00000028689	upf3b	54	59.600	Labrus_bergylta
ENSRNOG00000017397	Upf3a	53	44.033	ENSLACG00000006645	UPF3A	73	38.489	Latimeria_chalumnae
ENSRNOG00000017397	Upf3a	58	64.634	ENSLOCG00000015238	upf3b	57	64.173	Lepisosteus_oculatus
ENSRNOG00000017397	Upf3a	80	61.696	ENSLOCG00000002665	upf3a	73	63.798	Lepisosteus_oculatus
ENSRNOG00000017397	Upf3a	79	60.227	ENSLAFG00000023358	UPF3A	83	60.231	Loxodonta_africana
ENSRNOG00000017397	Upf3a	58	55.061	ENSLAFG00000001267	UPF3B	54	61.538	Loxodonta_africana
ENSRNOG00000017397	Upf3a	97	67.750	ENSMFAG00000045016	UPF3A	86	67.079	Macaca_fascicularis
ENSRNOG00000017397	Upf3a	97	68.421	ENSMMUG00000007449	UPF3A	85	68.250	Macaca_mulatta
ENSRNOG00000017397	Upf3a	84	71.709	ENSMNEG00000036402	UPF3A	75	71.508	Macaca_nemestrina
ENSRNOG00000017397	Upf3a	88	70.833	ENSMLEG00000014726	UPF3A	83	70.637	Mandrillus_leucophaeus
ENSRNOG00000017397	Upf3a	81	64.048	ENSMAMG00000018364	upf3a	69	64.048	Mastacembelus_armatus
ENSRNOG00000017397	Upf3a	75	69.937	ENSMGAG00000014837	UPF3A	79	69.937	Meleagris_gallopavo
ENSRNOG00000017397	Upf3a	80	87.692	ENSMOCG00000000550	Upf3a	92	87.692	Microtus_ochrogaster
ENSRNOG00000017397	Upf3a	80	72.321	ENSMODG00000003159	UPF3A	79	72.321	Monodelphis_domestica
ENSRNOG00000017397	Upf3a	97	88.354	MGP_CAROLIEiJ_G0030848	Upf3a	93	88.354	Mus_caroli
ENSRNOG00000017397	Upf3a	97	90.380	ENSMUSG00000038398	Upf3a	94	90.380	Mus_musculus
ENSRNOG00000017397	Upf3a	97	89.620	MGP_PahariEiJ_G0021311	Upf3a	94	89.620	Mus_pahari
ENSRNOG00000017397	Upf3a	97	90.127	MGP_SPRETEiJ_G0031958	Upf3a	94	90.127	Mus_spretus
ENSRNOG00000017397	Upf3a	98	70.833	ENSMPUG00000009139	UPF3A	85	70.833	Mustela_putorius_furo
ENSRNOG00000017397	Upf3a	81	71.758	ENSMLUG00000015905	UPF3A	82	71.758	Myotis_lucifugus
ENSRNOG00000017397	Upf3a	99	80.741	ENSNGAG00000019314	Upf3a	96	80.741	Nannospalax_galili
ENSRNOG00000017397	Upf3a	98	70.316	ENSNLEG00000007563	UPF3A	86	70.316	Nomascus_leucogenys
ENSRNOG00000017397	Upf3a	60	78.889	ENSOPRG00000008846	-	67	70.698	Ochotona_princeps
ENSRNOG00000017397	Upf3a	53	77.523	ENSODEG00000009176	-	83	80.000	Octodon_degus
ENSRNOG00000017397	Upf3a	79	60.542	ENSOANG00000006985	-	86	60.542	Ornithorhynchus_anatinus
ENSRNOG00000017397	Upf3a	86	62.222	ENSOCUG00000008450	UPF3A	85	58.049	Oryctolagus_cuniculus
ENSRNOG00000017397	Upf3a	58	60.324	ENSORLG00000001026	upf3b	64	51.460	Oryzias_latipes
ENSRNOG00000017397	Upf3a	80	62.500	ENSORLG00000010911	upf3a	74	60.870	Oryzias_latipes
ENSRNOG00000017397	Upf3a	58	60.729	ENSORLG00020003758	upf3b	55	59.533	Oryzias_latipes_hni
ENSRNOG00000017397	Upf3a	84	58.807	ENSORLG00020014317	upf3a	74	60.057	Oryzias_latipes_hni
ENSRNOG00000017397	Upf3a	58	60.729	ENSORLG00015012954	upf3b	55	59.533	Oryzias_latipes_hsok
ENSRNOG00000017397	Upf3a	86	59.831	ENSOMEG00000014425	upf3a	77	59.831	Oryzias_melastigma
ENSRNOG00000017397	Upf3a	97	69.533	ENSOGAG00000004788	UPF3A	99	68.932	Otolemur_garnettii
ENSRNOG00000017397	Upf3a	62	50.794	ENSOARG00000007869	-	61	47.222	Ovis_aries
ENSRNOG00000017397	Upf3a	89	68.533	ENSOARG00000009004	UPF3A	80	68.351	Ovis_aries
ENSRNOG00000017397	Upf3a	98	70.416	ENSPPAG00000042267	UPF3A	86	70.416	Pan_paniscus
ENSRNOG00000017397	Upf3a	92	70.801	ENSPPRG00000025062	UPF3A	85	70.936	Panthera_pardus
ENSRNOG00000017397	Upf3a	87	56.164	ENSPTRG00000051640	-	81	56.011	Pan_troglodytes
ENSRNOG00000017397	Upf3a	81	59.824	ENSPTRG00000041187	-	75	60.117	Pan_troglodytes
ENSRNOG00000017397	Upf3a	81	59.517	ENSPTRG00000041835	-	74	59.517	Pan_troglodytes
ENSRNOG00000017397	Upf3a	98	70.732	ENSPTRG00000006073	UPF3A	86	70.732	Pan_troglodytes
ENSRNOG00000017397	Upf3a	97	71.750	ENSPANG00000004346	UPF3A	86	71.571	Papio_anubis
ENSRNOG00000017397	Upf3a	59	63.454	ENSPKIG00000019226	upf3b	75	69.231	Paramormyrops_kingsleyae
ENSRNOG00000017397	Upf3a	79	70.359	ENSPSIG00000007468	UPF3A	82	70.359	Pelodiscus_sinensis
ENSRNOG00000017397	Upf3a	97	88.131	ENSPEMG00000019968	-	94	88.131	Peromyscus_maniculatus_bairdii
ENSRNOG00000017397	Upf3a	73	71.967	ENSPCIG00000019590	-	90	71.362	Phascolarctos_cinereus
ENSRNOG00000017397	Upf3a	81	64.438	ENSPFOG00000013222	upf3a	71	64.438	Poecilia_formosa
ENSRNOG00000017397	Upf3a	81	63.333	ENSPLAG00000011960	upf3a	72	63.333	Poecilia_latipinna
ENSRNOG00000017397	Upf3a	81	64.848	ENSPMEG00000000836	upf3a	68	64.848	Poecilia_mexicana
ENSRNOG00000017397	Upf3a	98	70.976	ENSPPYG00000005536	UPF3A	86	71.220	Pongo_abelii
ENSRNOG00000017397	Upf3a	79	63.526	ENSPCAG00000013124	UPF3A	68	63.526	Procavia_capensis
ENSRNOG00000017397	Upf3a	97	66.749	ENSPVAG00000005656	UPF3A	85	67.488	Pteropus_vampyrus
ENSRNOG00000017397	Upf3a	82	62.275	ENSPNAG00000019532	upf3a	73	62.275	Pygocentrus_nattereri
ENSRNOG00000017397	Upf3a	59	63.855	ENSPNAG00000021528	upf3b	72	67.580	Pygocentrus_nattereri
ENSRNOG00000017397	Upf3a	86	72.727	ENSRBIG00000034007	UPF3A	81	72.549	Rhinopithecus_bieti
ENSRNOG00000017397	Upf3a	83	73.235	ENSRROG00000012212	UPF3A	71	74.398	Rhinopithecus_roxellana
ENSRNOG00000017397	Upf3a	97	60.539	ENSSBOG00000029989	UPF3A	85	60.784	Saimiri_boliviensis_boliviensis
ENSRNOG00000017397	Upf3a	82	70.640	ENSSHAG00000009895	UPF3A	82	70.640	Sarcophilus_harrisii
ENSRNOG00000017397	Upf3a	83	62.130	ENSSFOG00015021851	upf3a	73	61.696	Scleropages_formosus
ENSRNOG00000017397	Upf3a	61	63.953	ENSSFOG00015005614	upf3b	56	63.953	Scleropages_formosus
ENSRNOG00000017397	Upf3a	59	63.745	ENSSMAG00000012913	upf3b	69	68.372	Scophthalmus_maximus
ENSRNOG00000017397	Upf3a	80	52.294	ENSSDUG00000009680	upf3a	81	56.579	Seriola_dumerili
ENSRNOG00000017397	Upf3a	79	61.027	ENSSARG00000007262	UPF3A	82	56.677	Sorex_araneus
ENSRNOG00000017397	Upf3a	58	63.525	ENSSPAG00000009989	upf3b	54	63.600	Stegastes_partitus
ENSRNOG00000017397	Upf3a	98	68.127	ENSSSCG00000024679	UPF3A	75	76.299	Sus_scrofa
ENSRNOG00000017397	Upf3a	82	71.387	ENSTGUG00000009493	UPF3A	88	71.387	Taeniopygia_guttata
ENSRNOG00000017397	Upf3a	81	52.212	ENSTNIG00000014973	upf3a	85	51.026	Tetraodon_nigroviridis
ENSRNOG00000017397	Upf3a	70	60.884	ENSTBEG00000017186	-	93	60.884	Tupaia_belangeri
ENSRNOG00000017397	Upf3a	97	60.437	ENSTTRG00000015414	UPF3A	86	60.437	Tursiops_truncatus
ENSRNOG00000017397	Upf3a	81	70.930	ENSVPAG00000003525	UPF3A	86	70.930	Vicugna_pacos
ENSRNOG00000017397	Upf3a	98	68.049	ENSVVUG00000013538	UPF3A	83	68.523	Vulpes_vulpes
ENSRNOG00000017397	Upf3a	81	56.886	ENSXETG00000002572	upf3a	79	56.886	Xenopus_tropicalis
ENSRNOG00000017397	Upf3a	69	52.962	ENSXETG00000007440	upf3b	71	69.512	Xenopus_tropicalis
ENSRNOG00000017397	Upf3a	81	64.242	ENSXMAG00000013452	upf3a	71	64.242	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0035145	exon-exon junction complex	-	IEA	Component
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045727	positive regulation of translation	21873635.	IBA	Process
GO:0045727	positive regulation of translation	-	ISO	Process