EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017405 (Gene tree)
Gene ID: 296301
Gene Symbol: Raly
Alias: LOC296301
Full Name: RALY heterogeneous nuclear ribonucleoprotein
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 64217 bases
Position: chr3:150323116-150387332
Accession: 1307228
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000074887	RRM_1	PF00076.22	3.9e-12	1	1
ENSRNOP00000023429	RRM_1	PF00076.22	4.4e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000080485	-	1402	XM_008762316	ENSRNOP00000074887	295 (aa)	XP_008760538	Q5PQR0
ENSRNOT00000023429	-	1206	XM_008762314	ENSRNOP00000023429	311 (aa)	XP_008760536	E9PTI6

Gene Model

Click here to download ENSRNOG00000017405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017405's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000017405	Raly	67	57.075	ENSRNOG00000011621	LOC100911576	71	57.547
ENSRNOG00000017405	Raly	68	56.221	ENSRNOG00000050800	Hnrnpc	71	56.682

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017405	Raly	100	86.441	ENSG00000125970	RALY	100	95.506	Homo_sapiens
ENSRNOG00000017405	Raly	68	74.528	ENSAPOG00000001026	raly	72	74.528	Acanthochromis_polyacanthus
ENSRNOG00000017405	Raly	100	88.103	ENSAMEG00000009050	RALY	100	84.877	Ailuropoda_melanoleuca
ENSRNOG00000017405	Raly	76	71.250	ENSACIG00000024288	raly	87	74.449	Amphilophus_citrinellus
ENSRNOG00000017405	Raly	68	74.528	ENSAOCG00000009883	raly	65	74.528	Amphiprion_ocellaris
ENSRNOG00000017405	Raly	68	75.000	ENSAPEG00000024106	raly	65	75.000	Amphiprion_percula
ENSRNOG00000017405	Raly	71	74.208	ENSATEG00000004870	raly	72	74.208	Anabas_testudineus
ENSRNOG00000017405	Raly	93	71.626	ENSAPLG00000012983	RALY	94	69.799	Anas_platyrhynchos
ENSRNOG00000017405	Raly	100	68.690	ENSACAG00000008983	RALY	88	67.732	Anolis_carolinensis
ENSRNOG00000017405	Raly	100	88.136	ENSANAG00000019376	RALY	100	88.136	Aotus_nancymaae
ENSRNOG00000017405	Raly	67	77.778	ENSACLG00000007561	raly	67	76.498	Astatotilapia_calliptera
ENSRNOG00000017405	Raly	100	89.153	ENSBTAG00000016524	RALY	100	87.119	Bos_taurus
ENSRNOG00000017405	Raly	100	87.797	ENSCJAG00000009449	-	100	87.119	Callithrix_jacchus
ENSRNOG00000017405	Raly	100	89.492	ENSCJAG00000018361	-	100	88.814	Callithrix_jacchus
ENSRNOG00000017405	Raly	100	89.068	ENSCAFG00000007490	RALY	100	88.103	Canis_familiaris
ENSRNOG00000017405	Raly	100	89.389	ENSCAFG00020005069	RALY	100	88.424	Canis_lupus_dingo
ENSRNOG00000017405	Raly	100	89.068	ENSCHIG00000026609	RALY	100	86.817	Capra_hircus
ENSRNOG00000017405	Raly	100	83.729	ENSTSYG00000002598	RALY	99	83.390	Carlito_syrichta
ENSRNOG00000017405	Raly	95	81.625	ENSCAPG00000008110	RALY	99	90.385	Cavia_aperea
ENSRNOG00000017405	Raly	100	89.172	ENSCPOG00000000309	RALY	100	96.682	Cavia_porcellus
ENSRNOG00000017405	Raly	100	87.458	ENSCCAG00000024548	RALY	100	87.458	Cebus_capucinus
ENSRNOG00000017405	Raly	100	87.500	ENSCATG00000031769	RALY	100	87.838	Cercocebus_atys
ENSRNOG00000017405	Raly	100	89.226	ENSCLAG00000016899	RALY	100	88.552	Chinchilla_lanigera
ENSRNOG00000017405	Raly	100	86.349	ENSCSAG00000012199	RALY	100	86.349	Chlorocebus_sabaeus
ENSRNOG00000017405	Raly	70	85.845	ENSCHOG00000000266	RALY	96	86.161	Choloepus_hoffmanni
ENSRNOG00000017405	Raly	100	66.355	ENSCPBG00000019164	RALY	100	68.792	Chrysemys_picta_bellii
ENSRNOG00000017405	Raly	100	88.475	ENSCANG00000037952	RALY	100	88.475	Colobus_angolensis_palliatus
ENSRNOG00000017405	Raly	100	95.695	ENSCGRG00001014652	Raly	100	95.695	Cricetulus_griseus_chok1gshd
ENSRNOG00000017405	Raly	100	95.695	ENSCGRG00000011726	Raly	100	95.695	Cricetulus_griseus_crigri
ENSRNOG00000017405	Raly	74	77.293	ENSDARG00000059972	raly	81	78.475	Danio_rerio
ENSRNOG00000017405	Raly	100	86.780	ENSDNOG00000046782	-	100	87.119	Dasypus_novemcinctus
ENSRNOG00000017405	Raly	95	85.859	ENSDNOG00000003227	-	99	86.195	Dasypus_novemcinctus
ENSRNOG00000017405	Raly	72	97.156	ENSDORG00000013400	Raly	100	97.156	Dipodomys_ordii
ENSRNOG00000017405	Raly	70	83.105	ENSETEG00000012464	-	100	83.105	Echinops_telfairi
ENSRNOG00000017405	Raly	62	77.604	ENSETEG00000001919	-	63	77.604	Echinops_telfairi
ENSRNOG00000017405	Raly	100	89.153	ENSEASG00005008501	RALY	100	87.797	Equus_asinus_asinus
ENSRNOG00000017405	Raly	100	88.424	ENSECAG00000012357	RALY	100	87.138	Equus_caballus
ENSRNOG00000017405	Raly	100	88.424	ENSECAG00000037642	-	100	87.138	Equus_caballus
ENSRNOG00000017405	Raly	100	88.424	ENSECAG00000030217	-	100	87.138	Equus_caballus
ENSRNOG00000017405	Raly	100	72.669	ENSEEUG00000005356	RALY	100	72.669	Erinaceus_europaeus
ENSRNOG00000017405	Raly	67	81.407	ENSELUG00000011138	raly	78	73.276	Esox_lucius
ENSRNOG00000017405	Raly	100	88.746	ENSFCAG00000025252	RALY	100	88.103	Felis_catus
ENSRNOG00000017405	Raly	100	89.073	ENSFDAG00000010175	RALY	100	98.824	Fukomys_damarensis
ENSRNOG00000017405	Raly	69	75.463	ENSFHEG00000018618	raly	82	75.463	Fundulus_heteroclitus
ENSRNOG00000017405	Raly	70	58.824	ENSGMOG00000012589	raly	99	58.824	Gadus_morhua
ENSRNOG00000017405	Raly	100	70.513	ENSGALG00000033696	RALY	100	69.872	Gallus_gallus
ENSRNOG00000017405	Raly	72	69.027	ENSGACG00000003636	raly	81	69.333	Gasterosteus_aculeatus
ENSRNOG00000017405	Raly	73	84.071	ENSGAGG00000016266	RALY	83	69.128	Gopherus_agassizii
ENSRNOG00000017405	Raly	100	84.407	ENSGGOG00000022709	RALY	100	86.102	Gorilla_gorilla
ENSRNOG00000017405	Raly	67	78.283	ENSHBUG00000021321	raly	67	78.283	Haplochromis_burtoni
ENSRNOG00000017405	Raly	100	83.051	ENSHGLG00000021175	-	100	81.356	Heterocephalus_glaber_female
ENSRNOG00000017405	Raly	100	87.302	ENSHGLG00000017779	-	99	96.154	Heterocephalus_glaber_female
ENSRNOG00000017405	Raly	100	69.492	ENSHGLG00100003829	-	100	69.492	Heterocephalus_glaber_male
ENSRNOG00000017405	Raly	100	87.619	ENSHGLG00100003933	RALY	100	97.872	Heterocephalus_glaber_male
ENSRNOG00000017405	Raly	100	66.102	ENSHGLG00100000278	-	100	66.441	Heterocephalus_glaber_male
ENSRNOG00000017405	Raly	76	52.720	ENSHCOG00000012268	raly	91	54.299	Hippocampus_comes
ENSRNOG00000017405	Raly	100	89.068	ENSSTOG00000008810	RALY	100	90.032	Ictidomys_tridecemlineatus
ENSRNOG00000017405	Raly	72	96.209	ENSJJAG00000008473	Raly	100	97.872	Jaculus_jaculus
ENSRNOG00000017405	Raly	69	75.122	ENSKMAG00000015656	raly	83	75.122	Kryptolebias_marmoratus
ENSRNOG00000017405	Raly	71	72.321	ENSLBEG00000022656	raly	85	73.214	Labrus_bergylta
ENSRNOG00000017405	Raly	72	78.924	ENSLACG00000008596	RALY	78	78.924	Latimeria_chalumnae
ENSRNOG00000017405	Raly	74	78.603	ENSLOCG00000007219	raly	79	80.717	Lepisosteus_oculatus
ENSRNOG00000017405	Raly	100	86.262	ENSLAFG00000000321	RALY	100	85.623	Loxodonta_africana
ENSRNOG00000017405	Raly	100	87.458	ENSMFAG00000033131	RALY	100	87.458	Macaca_fascicularis
ENSRNOG00000017405	Raly	100	85.531	ENSMMUG00000018093	RALY	100	86.174	Macaca_mulatta
ENSRNOG00000017405	Raly	100	86.441	ENSMNEG00000044988	RALY	100	87.458	Macaca_nemestrina
ENSRNOG00000017405	Raly	100	87.797	ENSMLEG00000028900	RALY	100	87.458	Mandrillus_leucophaeus
ENSRNOG00000017405	Raly	69	76.585	ENSMAMG00000012529	raly	62	77.561	Mastacembelus_armatus
ENSRNOG00000017405	Raly	67	77.778	ENSMZEG00005016550	raly	64	78.788	Maylandia_zebra
ENSRNOG00000017405	Raly	100	71.019	ENSMGAG00000002214	RALY	100	70.192	Meleagris_gallopavo
ENSRNOG00000017405	Raly	72	99.526	ENSMAUG00000005739	Raly	100	99.526	Mesocricetus_auratus
ENSRNOG00000017405	Raly	100	87.119	ENSMICG00000039074	RALY	100	87.119	Microcebus_murinus
ENSRNOG00000017405	Raly	100	94.389	ENSMOCG00000009450	Raly	100	94.389	Microtus_ochrogaster
ENSRNOG00000017405	Raly	72	73.778	ENSMMOG00000013788	raly	86	74.667	Mola_mola
ENSRNOG00000017405	Raly	100	61.875	ENSMODG00000002819	-	100	62.813	Monodelphis_domestica
ENSRNOG00000017405	Raly	69	76.389	ENSMALG00000007071	raly	55	76.037	Monopterus_albus
ENSRNOG00000017405	Raly	100	93.243	MGP_CAROLIEiJ_G0024519	Raly	100	100.000	Mus_caroli
ENSRNOG00000017405	Raly	100	93.919	ENSMUSG00000027593	Raly	100	100.000	Mus_musculus
ENSRNOG00000017405	Raly	100	92.652	MGP_PahariEiJ_G0025963	Raly	100	100.000	Mus_pahari
ENSRNOG00000017405	Raly	100	92.013	MGP_SPRETEiJ_G0025441	Raly	100	100.000	Mus_spretus
ENSRNOG00000017405	Raly	100	89.389	ENSMPUG00000017820	RALY	100	88.424	Mustela_putorius_furo
ENSRNOG00000017405	Raly	100	87.797	ENSMLUG00000005330	-	100	87.458	Myotis_lucifugus
ENSRNOG00000017405	Raly	100	79.743	ENSMLUG00000027895	-	98	77.814	Myotis_lucifugus
ENSRNOG00000017405	Raly	72	99.052	ENSNGAG00000001263	Raly	100	99.052	Nannospalax_galili
ENSRNOG00000017405	Raly	67	78.788	ENSNBRG00000014761	raly	67	78.788	Neolamprologus_brichardi
ENSRNOG00000017405	Raly	82	76.172	ENSNLEG00000010031	-	86	76.172	Nomascus_leucogenys
ENSRNOG00000017405	Raly	100	85.531	ENSOPRG00000008423	RALY	100	84.244	Ochotona_princeps
ENSRNOG00000017405	Raly	91	70.149	ENSODEG00000011160	-	100	71.269	Octodon_degus
ENSRNOG00000017405	Raly	67	84.264	ENSODEG00000012831	-	100	84.264	Octodon_degus
ENSRNOG00000017405	Raly	100	84.740	ENSODEG00000008369	-	100	83.117	Octodon_degus
ENSRNOG00000017405	Raly	69	75.576	ENSONIG00000004416	raly	75	76.498	Oreochromis_niloticus
ENSRNOG00000017405	Raly	100	84.906	ENSOCUG00000000477	RALY	86	87.107	Oryctolagus_cuniculus
ENSRNOG00000017405	Raly	100	80.128	ENSOGAG00000032337	RALY	100	81.090	Otolemur_garnettii
ENSRNOG00000017405	Raly	100	88.746	ENSOARG00000008957	RALY	100	86.495	Ovis_aries
ENSRNOG00000017405	Raly	100	87.119	ENSPPAG00000034951	RALY	100	87.797	Pan_paniscus
ENSRNOG00000017405	Raly	100	90.508	ENSPPRG00000014593	RALY	100	89.492	Panthera_pardus
ENSRNOG00000017405	Raly	100	90.508	ENSPTIG00000021910	RALY	100	89.492	Panthera_tigris_altaica
ENSRNOG00000017405	Raly	100	87.119	ENSPTRG00000013410	RALY	100	87.458	Pan_troglodytes
ENSRNOG00000017405	Raly	100	87.797	ENSPANG00000018093	RALY	100	87.458	Papio_anubis
ENSRNOG00000017405	Raly	74	75.217	ENSPKIG00000004894	raly	77	78.440	Paramormyrops_kingsleyae
ENSRNOG00000017405	Raly	73	71.730	ENSPSIG00000017714	RALY	96	59.677	Pelodiscus_sinensis
ENSRNOG00000017405	Raly	95	94.755	ENSPEMG00000021466	Raly	100	94.755	Peromyscus_maniculatus_bairdii
ENSRNOG00000017405	Raly	100	65.273	ENSPCIG00000011153	-	100	65.916	Phascolarctos_cinereus
ENSRNOG00000017405	Raly	100	85.531	ENSPPYG00000010932	RALY	100	85.209	Pongo_abelii
ENSRNOG00000017405	Raly	95	80.602	ENSPCAG00000016867	RALY	99	80.268	Procavia_capensis
ENSRNOG00000017405	Raly	100	86.441	ENSPCOG00000016363	RALY	100	86.441	Propithecus_coquereli
ENSRNOG00000017405	Raly	100	87.460	ENSPVAG00000015827	RALY	100	87.138	Pteropus_vampyrus
ENSRNOG00000017405	Raly	67	77.273	ENSPNYG00000011247	raly	64	78.283	Pundamilia_nyererei
ENSRNOG00000017405	Raly	74	76.087	ENSPNAG00000011812	raly	79	77.578	Pygocentrus_nattereri
ENSRNOG00000017405	Raly	100	87.625	ENSRBIG00000030203	RALY	100	88.963	Rhinopithecus_bieti
ENSRNOG00000017405	Raly	100	88.629	ENSRROG00000038781	RALY	100	88.629	Rhinopithecus_roxellana
ENSRNOG00000017405	Raly	100	88.136	ENSSBOG00000001418	RALY	100	87.797	Saimiri_boliviensis_boliviensis
ENSRNOG00000017405	Raly	100	66.777	ENSSHAG00000016830	RALY	100	65.424	Sarcophilus_harrisii
ENSRNOG00000017405	Raly	74	75.217	ENSSFOG00015012304	raly	81	79.358	Scleropages_formosus
ENSRNOG00000017405	Raly	77	66.942	ENSSMAG00000001107	raly	73	73.182	Scophthalmus_maximus
ENSRNOG00000017405	Raly	73	71.739	ENSSDUG00000002411	raly	73	76.498	Seriola_dumerili
ENSRNOG00000017405	Raly	73	71.930	ENSSLDG00000017872	raly	71	77.103	Seriola_lalandi_dorsalis
ENSRNOG00000017405	Raly	100	66.238	ENSSARG00000002763	-	100	66.238	Sorex_araneus
ENSRNOG00000017405	Raly	93	70.242	ENSSPUG00000006251	RALY	84	86.239	Sphenodon_punctatus
ENSRNOG00000017405	Raly	55	78.947	ENSSPAG00000022480	-	67	80.117	Stegastes_partitus
ENSRNOG00000017405	Raly	100	86.174	ENSSSCG00000007275	RALY	100	86.174	Sus_scrofa
ENSRNOG00000017405	Raly	69	86.111	ENSTGUG00000003715	RALY	100	87.037	Taeniopygia_guttata
ENSRNOG00000017405	Raly	100	77.564	ENSTBEG00000009812	RALY	100	76.282	Tupaia_belangeri
ENSRNOG00000017405	Raly	100	86.538	ENSTTRG00000006590	RALY	100	85.256	Tursiops_truncatus
ENSRNOG00000017405	Raly	97	89.123	ENSUAMG00000006993	RALY	99	88.070	Ursus_americanus
ENSRNOG00000017405	Raly	100	89.389	ENSUMAG00000024106	RALY	100	88.424	Ursus_maritimus
ENSRNOG00000017405	Raly	73	96.226	ENSVPAG00000000373	RALY	76	96.226	Vicugna_pacos
ENSRNOG00000017405	Raly	100	89.389	ENSVVUG00000004546	RALY	100	88.424	Vulpes_vulpes
ENSRNOG00000017405	Raly	96	58.917	ENSXETG00000019514	raly	79	72.489	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003712	transcription coregulator activity	-	IEA	Function
GO:0003712	transcription coregulator activity	-	ISO	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0042632	cholesterol homeostasis	-	IEA	Process
GO:0042632	cholesterol homeostasis	-	ISO	Process
GO:0071013	catalytic step 2 spliceosome	-	IEA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:1903506	regulation of nucleic acid-templated transcription	-	IEA	Process
GO:1903506	regulation of nucleic acid-templated transcription	-	ISO	Process