EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017561 (Gene tree)
Gene ID: 298443
Gene Symbol: Toe1
Alias: LOC298443
Full Name: target of EGR1%2C exonuclease
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 3566 bases
Position: chr5:135659734-135663299
Accession: 1309094
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000061468	zf-CCCH	PF00642.24	5.4e-05	1	1
ENSRNOP00000071019	zf-CCCH	PF00642.24	7e-05	1	1
ENSRNOP00000071019	CAF1	PF04857.20	5.7e-88	1	2
ENSRNOP00000071019	CAF1	PF04857.20	5.7e-88	2	2
ENSRNOP00000061468	CAF1	PF04857.20	1.5e-80	1	2
ENSRNOP00000061468	CAF1	PF04857.20	1.5e-80	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000087237	-	1827	XM_006238651	ENSRNOP00000071019	504 (aa)	XP_006238713	A0A0G2JZE8
ENSRNOT00000066869	-	1436	-	ENSRNOP00000061468	393 (aa)	-	D4A5W0

Gene Model

Click here to download ENSRNOG00000017561's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017561	Toe1	99	85.567	ENSG00000132773	TOE1	100	82.387	Homo_sapiens
ENSRNOG00000017561	Toe1	93	49.219	ENSAPOG00000010450	toe1	97	50.199	Acanthochromis_polyacanthus
ENSRNOG00000017561	Toe1	99	84.319	ENSAMEG00000013576	TOE1	100	81.836	Ailuropoda_melanoleuca
ENSRNOG00000017561	Toe1	93	51.102	ENSACIG00000004175	toe1	97	50.507	Amphilophus_citrinellus
ENSRNOG00000017561	Toe1	93	49.038	ENSAOCG00000022922	toe1	97	50.195	Amphiprion_ocellaris
ENSRNOG00000017561	Toe1	75	63.545	ENSAPEG00000005572	toe1	98	49.590	Amphiprion_percula
ENSRNOG00000017561	Toe1	94	49.614	ENSATEG00000008973	toe1	97	50.099	Anabas_testudineus
ENSRNOG00000017561	Toe1	59	65.517	ENSAPLG00000007214	TOE1	96	62.705	Anas_platyrhynchos
ENSRNOG00000017561	Toe1	88	65.084	ENSACAG00000015161	TOE1	95	55.009	Anolis_carolinensis
ENSRNOG00000017561	Toe1	96	86.243	ENSANAG00000023815	-	98	90.800	Aotus_nancymaae
ENSRNOG00000017561	Toe1	100	71.094	ENSANAG00000032328	-	99	71.984	Aotus_nancymaae
ENSRNOG00000017561	Toe1	93	47.368	ENSACLG00000021437	toe1	97	48.099	Astatotilapia_calliptera
ENSRNOG00000017561	Toe1	93	53.608	ENSAMXG00000031029	toe1	95	53.236	Astyanax_mexicanus
ENSRNOG00000017561	Toe1	99	85.567	ENSBTAG00000011243	TOE1	100	80.762	Bos_taurus
ENSRNOG00000017561	Toe1	95	31.412	WBGene00013265	parn-2	82	32.251	Caenorhabditis_elegans
ENSRNOG00000017561	Toe1	99	85.861	ENSCJAG00000004716	TOE1	100	82.617	Callithrix_jacchus
ENSRNOG00000017561	Toe1	96	86.807	ENSCAFG00000004603	TOE1	100	82.975	Canis_familiaris
ENSRNOG00000017561	Toe1	96	86.807	ENSCAFG00020016716	TOE1	100	82.975	Canis_lupus_dingo
ENSRNOG00000017561	Toe1	99	85.052	ENSCHIG00000026678	TOE1	100	81.605	Capra_hircus
ENSRNOG00000017561	Toe1	99	86.082	ENSTSYG00000011320	TOE1	98	90.000	Carlito_syrichta
ENSRNOG00000017561	Toe1	66	84.942	ENSCAPG00000003952	TOE1	100	79.487	Cavia_aperea
ENSRNOG00000017561	Toe1	99	83.505	ENSCPOG00000036595	TOE1	100	79.648	Cavia_porcellus
ENSRNOG00000017561	Toe1	96	85.979	ENSCCAG00000030245	TOE1	98	90.400	Cebus_capucinus
ENSRNOG00000017561	Toe1	96	86.737	ENSCATG00000038458	TOE1	99	90.800	Cercocebus_atys
ENSRNOG00000017561	Toe1	98	85.271	ENSCLAG00000003906	TOE1	100	81.996	Chinchilla_lanigera
ENSRNOG00000017561	Toe1	98	85.530	ENSCSAG00000001213	TOE1	100	81.996	Chlorocebus_sabaeus
ENSRNOG00000017561	Toe1	99	86.082	ENSCHOG00000004270	TOE1	100	81.409	Choloepus_hoffmanni
ENSRNOG00000017561	Toe1	87	65.789	ENSCPBG00000005398	TOE1	75	65.789	Chrysemys_picta_bellii
ENSRNOG00000017561	Toe1	94	36.439	ENSCING00000003872	-	97	36.461	Ciona_intestinalis
ENSRNOG00000017561	Toe1	92	36.531	ENSCSAVG00000004594	-	96	36.515	Ciona_savignyi
ENSRNOG00000017561	Toe1	98	86.047	ENSCANG00000037540	TOE1	100	82.387	Colobus_angolensis_palliatus
ENSRNOG00000017561	Toe1	98	94.832	ENSCGRG00001022323	Toe1	100	91.194	Cricetulus_griseus_chok1gshd
ENSRNOG00000017561	Toe1	98	94.315	ENSCGRG00000004377	Toe1	100	90.802	Cricetulus_griseus_crigri
ENSRNOG00000017561	Toe1	93	48.375	ENSCSEG00000021445	toe1	97	47.093	Cynoglossus_semilaevis
ENSRNOG00000017561	Toe1	93	50.398	ENSCVAG00000006577	toe1	97	50.202	Cyprinodon_variegatus
ENSRNOG00000017561	Toe1	93	54.959	ENSDARG00000077544	toe1	96	54.812	Danio_rerio
ENSRNOG00000017561	Toe1	99	83.290	ENSDNOG00000015596	TOE1	97	80.273	Dasypus_novemcinctus
ENSRNOG00000017561	Toe1	99	87.113	ENSDORG00000007153	Toe1	100	83.170	Dipodomys_ordii
ENSRNOG00000017561	Toe1	94	82.114	ENSETEG00000013367	TOE1	100	78.138	Echinops_telfairi
ENSRNOG00000017561	Toe1	86	36.281	ENSEBUG00000000655	toe1	93	35.374	Eptatretus_burgeri
ENSRNOG00000017561	Toe1	100	74.902	ENSEASG00005004198	TOE1	100	72.921	Equus_asinus_asinus
ENSRNOG00000017561	Toe1	99	84.536	ENSECAG00000023204	TOE1	100	81.961	Equus_caballus
ENSRNOG00000017561	Toe1	99	82.262	ENSEEUG00000015402	TOE1	100	78.669	Erinaceus_europaeus
ENSRNOG00000017561	Toe1	93	51.468	ENSELUG00000012307	toe1	94	51.287	Esox_lucius
ENSRNOG00000017561	Toe1	99	86.340	ENSFCAG00000038191	TOE1	100	83.170	Felis_catus
ENSRNOG00000017561	Toe1	78	62.579	ENSFALG00000005017	TOE1	99	53.333	Ficedula_albicollis
ENSRNOG00000017561	Toe1	98	86.047	ENSFDAG00000019031	TOE1	100	82.643	Fukomys_damarensis
ENSRNOG00000017561	Toe1	93	48.733	ENSFHEG00000021893	toe1	97	49.027	Fundulus_heteroclitus
ENSRNOG00000017561	Toe1	93	52.532	ENSGMOG00000004656	toe1	97	52.137	Gadus_morhua
ENSRNOG00000017561	Toe1	87	64.789	ENSGALG00000010228	TOE1	98	55.048	Gallus_gallus
ENSRNOG00000017561	Toe1	93	50.980	ENSGAFG00000013948	toe1	97	50.797	Gambusia_affinis
ENSRNOG00000017561	Toe1	93	52.381	ENSGACG00000014339	toe1	98	52.510	Gasterosteus_aculeatus
ENSRNOG00000017561	Toe1	94	60.724	ENSGAGG00000023228	TOE1	93	60.411	Gopherus_agassizii
ENSRNOG00000017561	Toe1	99	86.082	ENSGGOG00000003290	TOE1	98	90.800	Gorilla_gorilla
ENSRNOG00000017561	Toe1	93	49.140	ENSHBUG00000012101	toe1	97	49.516	Haplochromis_burtoni
ENSRNOG00000017561	Toe1	98	83.247	ENSHGLG00000003603	TOE1	100	81.445	Heterocephalus_glaber_female
ENSRNOG00000017561	Toe1	98	83.247	ENSHGLG00100015361	TOE1	100	81.445	Heterocephalus_glaber_male
ENSRNOG00000017561	Toe1	91	51.235	ENSHCOG00000016394	toe1	97	51.235	Hippocampus_comes
ENSRNOG00000017561	Toe1	92	54.906	ENSIPUG00000002717	toe1	97	55.136	Ictalurus_punctatus
ENSRNOG00000017561	Toe1	98	85.271	ENSSTOG00000010669	TOE1	100	81.605	Ictidomys_tridecemlineatus
ENSRNOG00000017561	Toe1	61	91.379	ENSJJAG00000021743	Toe1	99	91.379	Jaculus_jaculus
ENSRNOG00000017561	Toe1	93	51.081	ENSKMAG00000020891	toe1	96	50.497	Kryptolebias_marmoratus
ENSRNOG00000017561	Toe1	93	49.140	ENSLBEG00000010456	toe1	97	49.130	Labrus_bergylta
ENSRNOG00000017561	Toe1	88	61.383	ENSLOCG00000002852	toe1	98	53.414	Lepisosteus_oculatus
ENSRNOG00000017561	Toe1	98	85.013	ENSLAFG00000017370	TOE1	100	80.822	Loxodonta_africana
ENSRNOG00000017561	Toe1	96	86.737	ENSMFAG00000042312	TOE1	99	90.800	Macaca_fascicularis
ENSRNOG00000017561	Toe1	96	86.737	ENSMMUG00000020081	TOE1	100	83.226	Macaca_mulatta
ENSRNOG00000017561	Toe1	96	86.737	ENSMNEG00000032131	TOE1	100	82.192	Macaca_nemestrina
ENSRNOG00000017561	Toe1	96	87.003	ENSMLEG00000028729	TOE1	100	82.192	Mandrillus_leucophaeus
ENSRNOG00000017561	Toe1	93	47.744	ENSMAMG00000015291	toe1	97	48.669	Mastacembelus_armatus
ENSRNOG00000017561	Toe1	93	47.368	ENSMZEG00005014305	toe1	97	48.099	Maylandia_zebra
ENSRNOG00000017561	Toe1	84	57.919	ENSMGAG00000010387	TOE1	99	57.919	Meleagris_gallopavo
ENSRNOG00000017561	Toe1	98	93.540	ENSMAUG00000022118	Toe1	100	90.215	Mesocricetus_auratus
ENSRNOG00000017561	Toe1	99	85.052	ENSMICG00000047305	-	100	79.804	Microcebus_murinus
ENSRNOG00000017561	Toe1	89	73.504	ENSMICG00000032375	-	94	73.504	Microcebus_murinus
ENSRNOG00000017561	Toe1	98	93.041	ENSMOCG00000012917	Toe1	100	89.648	Microtus_ochrogaster
ENSRNOG00000017561	Toe1	93	48.729	ENSMMOG00000020894	toe1	96	48.927	Mola_mola
ENSRNOG00000017561	Toe1	89	73.938	ENSMODG00000002430	TOE1	98	67.078	Monodelphis_domestica
ENSRNOG00000017561	Toe1	93	47.538	ENSMALG00000010017	toe1	97	47.868	Monopterus_albus
ENSRNOG00000017561	Toe1	98	94.315	MGP_CAROLIEiJ_G0026342	Toe1	98	96.739	Mus_caroli
ENSRNOG00000017561	Toe1	98	94.832	ENSMUSG00000028688	Toe1	98	97.826	Mus_musculus
ENSRNOG00000017561	Toe1	98	95.866	MGP_PahariEiJ_G0028674	Toe1	98	97.826	Mus_pahari
ENSRNOG00000017561	Toe1	98	95.349	MGP_SPRETEiJ_G0027314	Toe1	98	97.826	Mus_spretus
ENSRNOG00000017561	Toe1	94	85.984	ENSMPUG00000013123	TOE1	100	81.092	Mustela_putorius_furo
ENSRNOG00000017561	Toe1	99	82.990	ENSMLUG00000005649	TOE1	100	80.235	Myotis_lucifugus
ENSRNOG00000017561	Toe1	93	51.951	ENSNBRG00000019107	toe1	97	51.852	Neolamprologus_brichardi
ENSRNOG00000017561	Toe1	99	85.567	ENSNLEG00000014383	TOE1	98	90.400	Nomascus_leucogenys
ENSRNOG00000017561	Toe1	70	84.615	ENSMEUG00000000629	-	86	85.161	Notamacropus_eugenii
ENSRNOG00000017561	Toe1	99	82.990	ENSOPRG00000004057	TOE1	100	81.018	Ochotona_princeps
ENSRNOG00000017561	Toe1	98	85.271	ENSODEG00000008239	TOE1	100	81.018	Octodon_degus
ENSRNOG00000017561	Toe1	93	49.331	ENSONIG00000009053	toe1	97	49.710	Oreochromis_niloticus
ENSRNOG00000017561	Toe1	96	54.361	ENSOANG00000011797	-	94	55.252	Ornithorhynchus_anatinus
ENSRNOG00000017561	Toe1	99	84.021	ENSOCUG00000017503	TOE1	100	82.779	Oryctolagus_cuniculus
ENSRNOG00000017561	Toe1	93	47.368	ENSORLG00000012609	toe1	97	49.105	Oryzias_latipes
ENSRNOG00000017561	Toe1	93	47.280	ENSORLG00020006441	toe1	97	49.699	Oryzias_latipes_hni
ENSRNOG00000017561	Toe1	93	50.198	ENSORLG00015001476	toe1	97	49.799	Oryzias_latipes_hsok
ENSRNOG00000017561	Toe1	93	50.000	ENSOMEG00000014153	toe1	97	49.597	Oryzias_melastigma
ENSRNOG00000017561	Toe1	56	86.758	ENSOGAG00000002298	-	100	86.758	Otolemur_garnettii
ENSRNOG00000017561	Toe1	100	60.465	ENSOGAG00000032761	-	100	60.234	Otolemur_garnettii
ENSRNOG00000017561	Toe1	99	85.309	ENSOARG00000001561	TOE1	100	80.952	Ovis_aries
ENSRNOG00000017561	Toe1	99	85.825	ENSPPAG00000043315	TOE1	98	90.800	Pan_paniscus
ENSRNOG00000017561	Toe1	99	86.856	ENSPPRG00000011880	TOE1	100	83.562	Panthera_pardus
ENSRNOG00000017561	Toe1	99	86.856	ENSPTIG00000008086	TOE1	100	83.562	Panthera_tigris_altaica
ENSRNOG00000017561	Toe1	99	85.567	ENSPTRG00000000672	TOE1	98	90.800	Pan_troglodytes
ENSRNOG00000017561	Toe1	96	86.737	ENSPANG00000012549	TOE1	98	82.192	Papio_anubis
ENSRNOG00000017561	Toe1	93	52.532	ENSPKIG00000010811	toe1	94	51.915	Paramormyrops_kingsleyae
ENSRNOG00000017561	Toe1	70	72.924	ENSPSIG00000010299	TOE1	95	72.963	Pelodiscus_sinensis
ENSRNOG00000017561	Toe1	93	52.352	ENSPMGG00000020389	toe1	97	51.967	Periophthalmus_magnuspinnatus
ENSRNOG00000017561	Toe1	99	93.830	ENSPEMG00000021892	Toe1	100	90.998	Peromyscus_maniculatus_bairdii
ENSRNOG00000017561	Toe1	92	42.885	ENSPMAG00000004794	toe1	96	42.406	Petromyzon_marinus
ENSRNOG00000017561	Toe1	88	74.148	ENSPCIG00000027569	TOE1	97	66.736	Phascolarctos_cinereus
ENSRNOG00000017561	Toe1	93	50.891	ENSPFOG00000019517	toe1	97	50.704	Poecilia_formosa
ENSRNOG00000017561	Toe1	93	51.287	ENSPLAG00000018228	toe1	97	51.107	Poecilia_latipinna
ENSRNOG00000017561	Toe1	93	50.891	ENSPMEG00000019956	toe1	97	50.704	Poecilia_mexicana
ENSRNOG00000017561	Toe1	99	85.825	ENSPPYG00000001414	TOE1	100	82.779	Pongo_abelii
ENSRNOG00000017561	Toe1	98	84.496	ENSPCAG00000013351	TOE1	100	80.039	Procavia_capensis
ENSRNOG00000017561	Toe1	99	86.082	ENSPCOG00000000982	TOE1	98	88.400	Propithecus_coquereli
ENSRNOG00000017561	Toe1	99	76.804	ENSPVAG00000014998	TOE1	99	75.301	Pteropus_vampyrus
ENSRNOG00000017561	Toe1	93	47.368	ENSPNYG00000019914	toe1	97	48.099	Pundamilia_nyererei
ENSRNOG00000017561	Toe1	93	50.397	ENSPNAG00000021933	toe1	96	51.943	Pygocentrus_nattereri
ENSRNOG00000017561	Toe1	98	86.047	ENSRBIG00000031463	TOE1	99	90.400	Rhinopithecus_bieti
ENSRNOG00000017561	Toe1	98	86.047	ENSRROG00000026371	TOE1	99	90.400	Rhinopithecus_roxellana
ENSRNOG00000017561	Toe1	99	84.833	ENSSBOG00000026044	-	98	90.800	Saimiri_boliviensis_boliviensis
ENSRNOG00000017561	Toe1	99	74.293	ENSSBOG00000032639	-	98	73.047	Saimiri_boliviensis_boliviensis
ENSRNOG00000017561	Toe1	92	65.401	ENSSHAG00000010201	TOE1	97	66.388	Sarcophilus_harrisii
ENSRNOG00000017561	Toe1	87	62.099	ENSSFOG00015021182	toe1	95	54.280	Scleropages_formosus
ENSRNOG00000017561	Toe1	54	55.909	ENSSMAG00000015336	toe1	90	57.711	Scophthalmus_maximus
ENSRNOG00000017561	Toe1	77	42.105	ENSSMAG00000015322	toe1	69	61.187	Scophthalmus_maximus
ENSRNOG00000017561	Toe1	93	49.713	ENSSDUG00000013278	toe1	97	49.516	Seriola_dumerili
ENSRNOG00000017561	Toe1	93	49.617	ENSSLDG00000021979	toe1	97	49.612	Seriola_lalandi_dorsalis
ENSRNOG00000017561	Toe1	86	65.903	ENSSPUG00000003464	TOE1	98	55.894	Sphenodon_punctatus
ENSRNOG00000017561	Toe1	93	50.096	ENSSPAG00000009490	toe1	97	49.805	Stegastes_partitus
ENSRNOG00000017561	Toe1	99	82.564	ENSSSCG00000003918	TOE1	99	80.273	Sus_scrofa
ENSRNOG00000017561	Toe1	94	54.065	ENSTGUG00000007927	TOE1	99	52.784	Taeniopygia_guttata
ENSRNOG00000017561	Toe1	93	51.975	ENSTRUG00000025603	toe1	97	51.579	Takifugu_rubripes
ENSRNOG00000017561	Toe1	92	53.846	ENSTNIG00000017614	toe1	98	52.891	Tetraodon_nigroviridis
ENSRNOG00000017561	Toe1	79	89.180	ENSTBEG00000017625	TOE1	78	89.180	Tupaia_belangeri
ENSRNOG00000017561	Toe1	99	85.567	ENSTTRG00000008815	TOE1	100	82.975	Tursiops_truncatus
ENSRNOG00000017561	Toe1	99	85.825	ENSUAMG00000017724	TOE1	100	82.779	Ursus_americanus
ENSRNOG00000017561	Toe1	91	84.301	ENSUMAG00000024253	TOE1	100	84.301	Ursus_maritimus
ENSRNOG00000017561	Toe1	99	86.340	ENSVPAG00000011731	TOE1	100	83.757	Vicugna_pacos
ENSRNOG00000017561	Toe1	96	86.807	ENSVVUG00000007469	TOE1	91	84.008	Vulpes_vulpes
ENSRNOG00000017561	Toe1	94	53.711	ENSXETG00000003534	toe1	97	53.162	Xenopus_tropicalis
ENSRNOG00000017561	Toe1	93	50.600	ENSXCOG00000007796	toe1	97	50.407	Xiphophorus_couchianus
ENSRNOG00000017561	Toe1	93	49.902	ENSXMAG00000011102	toe1	97	49.501	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000175	3'-5'-exoribonuclease activity	-	ISO	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0015030	Cajal body	21873635.	IBA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0017069	snRNA binding	21873635.	IBA	Function
GO:0017069	snRNA binding	-	ISO	Function
GO:0034472	snRNA 3'-end processing	21873635.	IBA	Process
GO:0034472	snRNA 3'-end processing	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	ISO	Process