EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017622 (Gene tree)
Gene ID: 502389
Gene Symbol: Npm3
Alias: LOC502389|RGD1565542
Full Name: nucleophosmin/nucleoplasmin%2C 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 1472 bases
Position: chr1:265504575-265506046
Accession: 1565542
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000023963	Nucleoplasmin	PF03066.15	3.6e-35	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000023963	-	522	XM_577868	ENSRNOP00000023963	173 (aa)	XP_001058548	D3ZYK9

Gene Model

Click here to download ENSRNOG00000017622's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017622's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000017622	Npm3	65	41.071	ENSRNOG00000004616	Npm1	50	41.791
ENSRNOG00000017622	Npm3	54	34.375	ENSRNOG00000060714	AABR07007744.2	57	34.375
ENSRNOG00000017622	Npm3	61	36.792	ENSRNOG00000025638	Npm2	50	36.792

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017622	Npm3	94	80.952	ENSG00000107833	NPM3	100	82.584	Homo_sapiens
ENSRNOG00000017622	Npm3	66	51.724	ENSAPOG00000013083	npm3	70	51.304	Acanthochromis_polyacanthus
ENSRNOG00000017622	Npm3	100	81.921	ENSAMEG00000017639	-	100	83.051	Ailuropoda_melanoleuca
ENSRNOG00000017622	Npm3	85	63.158	ENSAMEG00000019414	-	90	63.158	Ailuropoda_melanoleuca
ENSRNOG00000017622	Npm3	79	48.201	ENSACIG00000022586	npm3	85	48.201	Amphilophus_citrinellus
ENSRNOG00000017622	Npm3	61	52.830	ENSAOCG00000009376	npm3	69	50.893	Amphiprion_ocellaris
ENSRNOG00000017622	Npm3	61	52.830	ENSAPEG00000015863	npm3	69	50.893	Amphiprion_percula
ENSRNOG00000017622	Npm3	61	52.830	ENSATEG00000022752	npm3	66	52.336	Anabas_testudineus
ENSRNOG00000017622	Npm3	58	74.000	ENSAPLG00000010935	NPM3	87	61.940	Anas_platyrhynchos
ENSRNOG00000017622	Npm3	75	56.923	ENSACAG00000011936	NPM3	62	66.990	Anolis_carolinensis
ENSRNOG00000017622	Npm3	100	69.942	ENSANAG00000033290	-	94	69.325	Aotus_nancymaae
ENSRNOG00000017622	Npm3	85	81.633	ENSANAG00000023832	-	69	81.507	Aotus_nancymaae
ENSRNOG00000017622	Npm3	94	67.665	ENSANAG00000023070	-	96	67.665	Aotus_nancymaae
ENSRNOG00000017622	Npm3	100	82.584	ENSANAG00000027082	-	100	82.022	Aotus_nancymaae
ENSRNOG00000017622	Npm3	61	52.830	ENSACLG00000007854	npm3	69	50.893	Astatotilapia_calliptera
ENSRNOG00000017622	Npm3	60	55.769	ENSAMXG00000039828	npm3	61	50.394	Astyanax_mexicanus
ENSRNOG00000017622	Npm3	97	81.871	ENSBTAG00000016335	NPM3	97	83.041	Bos_taurus
ENSRNOG00000017622	Npm3	100	82.022	ENSCJAG00000017650	NPM3	94	81.548	Callithrix_jacchus
ENSRNOG00000017622	Npm3	94	82.424	ENSCAFG00000009919	NPM3	87	85.143	Canis_familiaris
ENSRNOG00000017622	Npm3	94	82.424	ENSCAFG00020009185	NPM3	99	85.143	Canis_lupus_dingo
ENSRNOG00000017622	Npm3	97	81.871	ENSCHIG00000024055	-	91	82.609	Capra_hircus
ENSRNOG00000017622	Npm3	99	56.140	ENSCHIG00000016052	-	92	55.901	Capra_hircus
ENSRNOG00000017622	Npm3	94	47.531	ENSCAPG00000016606	NPM3	94	47.239	Cavia_aperea
ENSRNOG00000017622	Npm3	94	82.822	ENSCPOG00000006301	NPM3	95	82.822	Cavia_porcellus
ENSRNOG00000017622	Npm3	100	69.101	ENSCCAG00000029457	-	94	67.857	Cebus_capucinus
ENSRNOG00000017622	Npm3	94	80.357	ENSCCAG00000031043	-	100	80.899	Cebus_capucinus
ENSRNOG00000017622	Npm3	94	81.548	ENSCATG00000013755	NPM3	100	82.584	Cercocebus_atys
ENSRNOG00000017622	Npm3	94	81.548	ENSCSAG00000005509	NPM3	100	82.584	Chlorocebus_sabaeus
ENSRNOG00000017622	Npm3	94	63.804	ENSCPBG00000003817	NPM3	97	63.580	Chrysemys_picta_bellii
ENSRNOG00000017622	Npm3	94	81.437	ENSCANG00000020300	NPM3	100	82.486	Colobus_angolensis_palliatus
ENSRNOG00000017622	Npm3	100	86.857	ENSCGRG00001013345	Npm3	100	89.714	Cricetulus_griseus_chok1gshd
ENSRNOG00000017622	Npm3	77	84.559	ENSCGRG00000015351	Npm3	85	86.957	Cricetulus_griseus_crigri
ENSRNOG00000017622	Npm3	61	46.903	ENSCSEG00000007944	npm3	76	45.669	Cynoglossus_semilaevis
ENSRNOG00000017622	Npm3	61	51.376	ENSCVAG00000003305	npm3	66	50.909	Cyprinodon_variegatus
ENSRNOG00000017622	Npm3	64	51.818	ENSDARG00000103594	npm3	69	50.893	Danio_rerio
ENSRNOG00000017622	Npm3	100	80.114	ENSDORG00000003491	Npm3	100	78.977	Dipodomys_ordii
ENSRNOG00000017622	Npm3	99	75.706	ENSETEG00000006307	NPM3	99	77.401	Echinops_telfairi
ENSRNOG00000017622	Npm3	94	79.641	ENSEASG00005008834	NPM3	100	81.921	Equus_asinus_asinus
ENSRNOG00000017622	Npm3	94	79.641	ENSECAG00000007524	NPM3	100	81.921	Equus_caballus
ENSRNOG00000017622	Npm3	65	52.679	ENSELUG00000021730	npm3	85	48.201	Esox_lucius
ENSRNOG00000017622	Npm3	100	82.955	ENSFCAG00000007178	NPM3	100	84.091	Felis_catus
ENSRNOG00000017622	Npm3	66	64.348	ENSFALG00000008586	NPM3	72	64.348	Ficedula_albicollis
ENSRNOG00000017622	Npm3	61	82.075	ENSFDAG00000016537	NPM3	100	82.075	Fukomys_damarensis
ENSRNOG00000017622	Npm3	61	51.887	ENSFHEG00000003983	npm3	87	45.255	Fundulus_heteroclitus
ENSRNOG00000017622	Npm3	61	50.000	ENSGMOG00000004317	npm3	74	48.696	Gadus_morhua
ENSRNOG00000017622	Npm3	61	68.571	ENSGALG00000032329	NPM3	95	58.571	Gallus_gallus
ENSRNOG00000017622	Npm3	62	52.336	ENSGAFG00000009135	npm3	94	46.711	Gambusia_affinis
ENSRNOG00000017622	Npm3	61	52.830	ENSGACG00000007294	npm3	62	52.830	Gasterosteus_aculeatus
ENSRNOG00000017622	Npm3	97	56.069	ENSGAGG00000004081	NPM3	88	61.935	Gopherus_agassizii
ENSRNOG00000017622	Npm3	94	80.952	ENSGGOG00000027500	NPM3	100	82.584	Gorilla_gorilla
ENSRNOG00000017622	Npm3	61	51.887	ENSHBUG00000023704	npm3	89	48.592	Haplochromis_burtoni
ENSRNOG00000017622	Npm3	95	78.659	ENSHGLG00000019118	NPM3	100	78.035	Heterocephalus_glaber_female
ENSRNOG00000017622	Npm3	77	79.699	ENSHGLG00100010926	NPM3	100	78.947	Heterocephalus_glaber_male
ENSRNOG00000017622	Npm3	76	43.939	ENSHCOG00000019322	npm3	73	44.275	Hippocampus_comes
ENSRNOG00000017622	Npm3	78	47.407	ENSIPUG00000008204	npm3	87	50.365	Ictalurus_punctatus
ENSRNOG00000017622	Npm3	99	81.818	ENSSTOG00000022621	NPM3	94	81.928	Ictidomys_tridecemlineatus
ENSRNOG00000017622	Npm3	100	81.356	ENSJJAG00000018907	Npm3	100	81.356	Jaculus_jaculus
ENSRNOG00000017622	Npm3	61	53.774	ENSKMAG00000020800	npm3	66	51.786	Kryptolebias_marmoratus
ENSRNOG00000017622	Npm3	61	53.774	ENSLBEG00000015651	npm3	67	52.778	Labrus_bergylta
ENSRNOG00000017622	Npm3	94	46.296	ENSLOCG00000000705	-	97	46.875	Lepisosteus_oculatus
ENSRNOG00000017622	Npm3	98	79.412	ENSLAFG00000023022	NPM3	95	81.437	Loxodonta_africana
ENSRNOG00000017622	Npm3	94	81.548	ENSMFAG00000041878	NPM3	100	82.584	Macaca_fascicularis
ENSRNOG00000017622	Npm3	94	80.952	ENSMMUG00000015774	NPM3	100	82.022	Macaca_mulatta
ENSRNOG00000017622	Npm3	94	81.548	ENSMNEG00000039999	NPM3	100	82.584	Macaca_nemestrina
ENSRNOG00000017622	Npm3	94	81.548	ENSMLEG00000038129	NPM3	100	82.584	Mandrillus_leucophaeus
ENSRNOG00000017622	Npm3	69	49.580	ENSMAMG00000002698	npm3	71	48.760	Mastacembelus_armatus
ENSRNOG00000017622	Npm3	61	52.830	ENSMZEG00005003091	npm3	89	47.552	Maylandia_zebra
ENSRNOG00000017622	Npm3	94	87.273	ENSMAUG00000015218	Npm3	94	90.303	Mesocricetus_auratus
ENSRNOG00000017622	Npm3	94	81.437	ENSMICG00000044119	NPM3	100	82.486	Microcebus_murinus
ENSRNOG00000017622	Npm3	94	90.123	ENSMOCG00000013601	Npm3	99	89.535	Microtus_ochrogaster
ENSRNOG00000017622	Npm3	61	52.830	ENSMMOG00000010681	npm3	66	52.336	Mola_mola
ENSRNOG00000017622	Npm3	98	67.052	ENSMODG00000011689	NPM3	94	67.879	Monodelphis_domestica
ENSRNOG00000017622	Npm3	68	47.059	ENSMALG00000016787	npm3	72	46.721	Monopterus_albus
ENSRNOG00000017622	Npm3	100	93.714	MGP_CAROLIEiJ_G0023020	Npm3	100	93.714	Mus_caroli
ENSRNOG00000017622	Npm3	100	92.571	ENSMUSG00000056209	Npm3	100	93.714	Mus_musculus
ENSRNOG00000017622	Npm3	100	95.402	MGP_PahariEiJ_G0014510	Npm3	100	95.402	Mus_pahari
ENSRNOG00000017622	Npm3	100	92.571	MGP_SPRETEiJ_G0023941	Npm3	100	93.714	Mus_spretus
ENSRNOG00000017622	Npm3	94	80.838	ENSMPUG00000016894	NPM3	100	82.486	Mustela_putorius_furo
ENSRNOG00000017622	Npm3	97	80.233	ENSMLUG00000004961	NPM3	92	81.595	Myotis_lucifugus
ENSRNOG00000017622	Npm3	99	83.429	ENSNGAG00000022833	-	99	84.000	Nannospalax_galili
ENSRNOG00000017622	Npm3	99	80.233	ENSNGAG00000000155	-	99	79.070	Nannospalax_galili
ENSRNOG00000017622	Npm3	94	79.167	ENSNLEG00000018637	-	100	80.337	Nomascus_leucogenys
ENSRNOG00000017622	Npm3	94	81.548	ENSNLEG00000029281	-	100	82.584	Nomascus_leucogenys
ENSRNOG00000017622	Npm3	57	66.667	ENSMEUG00000004931	-	100	66.667	Notamacropus_eugenii
ENSRNOG00000017622	Npm3	79	75.182	ENSMEUG00000003465	-	93	76.744	Notamacropus_eugenii
ENSRNOG00000017622	Npm3	57	70.707	ENSMEUG00000002619	-	100	70.707	Notamacropus_eugenii
ENSRNOG00000017622	Npm3	93	78.182	ENSOPRG00000009229	NPM3	99	78.977	Ochotona_princeps
ENSRNOG00000017622	Npm3	97	79.167	ENSODEG00000006704	NPM3	96	79.141	Octodon_degus
ENSRNOG00000017622	Npm3	79	49.645	ENSONIG00000009513	npm3	97	45.399	Oreochromis_niloticus
ENSRNOG00000017622	Npm3	94	81.928	ENSOCUG00000016819	NPM3	94	83.133	Oryctolagus_cuniculus
ENSRNOG00000017622	Npm3	61	52.830	ENSORLG00000008492	npm3	75	52.830	Oryzias_latipes
ENSRNOG00000017622	Npm3	61	52.830	ENSORLG00020002450	npm3	70	52.830	Oryzias_latipes_hni
ENSRNOG00000017622	Npm3	65	50.893	ENSORLG00015006856	npm3	70	50.893	Oryzias_latipes_hsok
ENSRNOG00000017622	Npm3	66	49.123	ENSOMEG00000002666	npm3	74	47.500	Oryzias_melastigma
ENSRNOG00000017622	Npm3	100	81.356	ENSOGAG00000010001	NPM3	94	81.437	Otolemur_garnettii
ENSRNOG00000017622	Npm3	97	81.287	ENSOARG00000016916	NPM3	91	82.609	Ovis_aries
ENSRNOG00000017622	Npm3	94	80.952	ENSPPAG00000040517	NPM3	100	82.584	Pan_paniscus
ENSRNOG00000017622	Npm3	100	82.955	ENSPPRG00000012611	-	100	84.091	Panthera_pardus
ENSRNOG00000017622	Npm3	100	83.523	ENSPTIG00000005390	NPM3	100	84.659	Panthera_tigris_altaica
ENSRNOG00000017622	Npm3	94	80.952	ENSPTRG00000002875	NPM3	100	82.584	Pan_troglodytes
ENSRNOG00000017622	Npm3	94	81.548	ENSPANG00000021046	NPM3	100	82.584	Papio_anubis
ENSRNOG00000017622	Npm3	61	42.453	ENSPKIG00000007609	npm3	57	42.453	Paramormyrops_kingsleyae
ENSRNOG00000017622	Npm3	62	56.075	ENSPMGG00000020204	npm3	70	53.509	Periophthalmus_magnuspinnatus
ENSRNOG00000017622	Npm3	94	87.349	ENSPEMG00000007731	Npm3	100	88.068	Peromyscus_maniculatus_bairdii
ENSRNOG00000017622	Npm3	62	53.271	ENSPFOG00000014692	npm3	69	52.679	Poecilia_formosa
ENSRNOG00000017622	Npm3	62	53.271	ENSPLAG00000009956	npm3	69	52.679	Poecilia_latipinna
ENSRNOG00000017622	Npm3	58	54.000	ENSPMEG00000011795	npm3	71	52.830	Poecilia_mexicana
ENSRNOG00000017622	Npm3	62	53.271	ENSPREG00000020765	npm3	69	52.679	Poecilia_reticulata
ENSRNOG00000017622	Npm3	94	81.176	ENSPPYG00000002589	NPM3	87	81.667	Pongo_abelii
ENSRNOG00000017622	Npm3	100	80.791	ENSPCOG00000014704	NPM3	94	81.437	Propithecus_coquereli
ENSRNOG00000017622	Npm3	94	78.443	ENSPVAG00000004038	NPM3	100	80.226	Pteropus_vampyrus
ENSRNOG00000017622	Npm3	61	51.887	ENSPNYG00000009300	npm3	89	48.252	Pundamilia_nyererei
ENSRNOG00000017622	Npm3	79	51.095	ENSPNAG00000014779	npm3	87	51.095	Pygocentrus_nattereri
ENSRNOG00000017622	Npm3	100	81.921	ENSRBIG00000039086	-	100	82.486	Rhinopithecus_bieti
ENSRNOG00000017622	Npm3	80	77.622	ENSRBIG00000042048	-	90	78.322	Rhinopithecus_bieti
ENSRNOG00000017622	Npm3	100	81.921	ENSRROG00000029912	NPM3	100	82.486	Rhinopithecus_roxellana
ENSRNOG00000017622	Npm3	85	87.755	ENSSBOG00000027661	NPM3	100	81.176	Saimiri_boliviensis_boliviensis
ENSRNOG00000017622	Npm3	92	64.198	ENSSHAG00000008567	NPM3	94	65.060	Sarcophilus_harrisii
ENSRNOG00000017622	Npm3	76	45.038	ENSSFOG00015013651	npm3	97	41.975	Scleropages_formosus
ENSRNOG00000017622	Npm3	61	51.887	ENSSMAG00000003907	npm3	86	48.175	Scophthalmus_maximus
ENSRNOG00000017622	Npm3	61	55.660	ENSSDUG00000022843	npm3	67	54.630	Seriola_dumerili
ENSRNOG00000017622	Npm3	61	55.660	ENSSLDG00000002811	npm3	67	54.630	Seriola_lalandi_dorsalis
ENSRNOG00000017622	Npm3	69	69.672	ENSSPUG00000011875	NPM3	97	60.645	Sphenodon_punctatus
ENSRNOG00000017622	Npm3	65	50.893	ENSSPAG00000002553	npm3	73	49.153	Stegastes_partitus
ENSRNOG00000017622	Npm3	99	78.286	ENSSSCG00000010568	NPM3	94	79.394	Sus_scrofa
ENSRNOG00000017622	Npm3	64	66.667	ENSTGUG00000009948	NPM3	84	66.667	Taeniopygia_guttata
ENSRNOG00000017622	Npm3	76	48.092	ENSTRUG00000011661	npm3	99	42.331	Takifugu_rubripes
ENSRNOG00000017622	Npm3	78	46.667	ENSTNIG00000016518	npm3	74	46.667	Tetraodon_nigroviridis
ENSRNOG00000017622	Npm3	94	82.036	ENSUAMG00000024072	NPM3	73	83.616	Ursus_americanus
ENSRNOG00000017622	Npm3	94	82.036	ENSUMAG00000023016	NPM3	73	83.616	Ursus_maritimus
ENSRNOG00000017622	Npm3	100	83.523	ENSVPAG00000003120	NPM3	100	84.659	Vicugna_pacos
ENSRNOG00000017622	Npm3	94	82.424	ENSVVUG00000000945	NPM3	87	85.143	Vulpes_vulpes
ENSRNOG00000017622	Npm3	68	57.627	ENSXETG00000014472	npm3	68	57.627	Xenopus_tropicalis
ENSRNOG00000017622	Npm3	65	52.679	ENSXCOG00000012121	npm3	67	52.679	Xiphophorus_couchianus
ENSRNOG00000017622	Npm3	65	52.679	ENSXMAG00000013473	npm3	67	52.679	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0006364	rRNA processing	-	IEA	Process
GO:0006364	rRNA processing	-	ISO	Process
GO:0009303	rRNA transcription	-	IEA	Process
GO:0009303	rRNA transcription	-	ISO	Process
GO:0015629	actin cytoskeleton	-	IEA	Component
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0042393	histone binding	21873635.	IBA	Function