EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017647 (Gene tree)
Gene ID: 311414
Gene Symbol: Zc3h8
Alias: LOC311414|Zc3hdc8
Full Name: zinc finger CCCH type containing 8
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 16731 bases
Position: chr3:121471810-121488540
Accession: 1310458
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000023845	zf-CCCH	PF00642.24	1.9e-10	1	1
ENSRNOP00000023845	zf-CCCH_2	PF14608.6	1.5e-05	1	3
ENSRNOP00000023845	zf-CCCH_2	PF14608.6	1.5e-05	2	3
ENSRNOP00000023845	zf-CCCH_2	PF14608.6	1.5e-05	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000023845	-	1565	-	ENSRNOP00000023845	305 (aa)	-	Q6AYB0

Gene Model

Click here to download ENSRNOG00000017647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017647's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017647	Zc3h8	100	73.770	ENSG00000144161	ZC3H8	100	73.770	Homo_sapiens
ENSRNOG00000017647	Zc3h8	81	75.203	ENSAMEG00000016207	ZC3H8	99	75.203	Ailuropoda_melanoleuca
ENSRNOG00000017647	Zc3h8	100	71.242	ENSANAG00000022151	ZC3H8	100	71.242	Aotus_nancymaae
ENSRNOG00000017647	Zc3h8	99	69.408	ENSBTAG00000015965	ZC3H8	99	69.408	Bos_taurus
ENSRNOG00000017647	Zc3h8	100	71.242	ENSCJAG00000040629	ZC3H8	100	71.242	Callithrix_jacchus
ENSRNOG00000017647	Zc3h8	99	75.000	ENSCAFG00000007155	ZC3H8	77	75.000	Canis_familiaris
ENSRNOG00000017647	Zc3h8	99	75.000	ENSCAFG00020017540	ZC3H8	92	75.000	Canis_lupus_dingo
ENSRNOG00000017647	Zc3h8	99	65.815	ENSCHIG00000012152	ZC3H8	99	65.815	Capra_hircus
ENSRNOG00000017647	Zc3h8	99	76.316	ENSTSYG00000006668	ZC3H8	99	76.316	Carlito_syrichta
ENSRNOG00000017647	Zc3h8	91	70.144	ENSCPOG00000008258	ZC3H8	99	70.144	Cavia_porcellus
ENSRNOG00000017647	Zc3h8	100	68.852	ENSCCAG00000034286	-	100	68.852	Cebus_capucinus
ENSRNOG00000017647	Zc3h8	100	70.915	ENSCCAG00000019771	-	100	70.915	Cebus_capucinus
ENSRNOG00000017647	Zc3h8	100	71.803	ENSCATG00000031295	ZC3H8	100	72.876	Cercocebus_atys
ENSRNOG00000017647	Zc3h8	100	69.805	ENSCLAG00000006848	ZC3H8	100	69.805	Chinchilla_lanigera
ENSRNOG00000017647	Zc3h8	85	69.884	ENSCSAG00000016801	ZC3H8	98	71.154	Chlorocebus_sabaeus
ENSRNOG00000017647	Zc3h8	90	61.957	ENSCHOG00000010391	ZC3H8	98	61.957	Choloepus_hoffmanni
ENSRNOG00000017647	Zc3h8	100	56.913	ENSCANG00000014691	ZC3H8	100	56.913	Colobus_angolensis_palliatus
ENSRNOG00000017647	Zc3h8	100	86.928	ENSCGRG00001018353	Zc3h8	100	86.928	Cricetulus_griseus_chok1gshd
ENSRNOG00000017647	Zc3h8	100	86.928	ENSCGRG00000016191	Zc3h8	100	86.928	Cricetulus_griseus_crigri
ENSRNOG00000017647	Zc3h8	100	70.915	ENSDORG00000029341	Zc3h8	100	70.915	Dipodomys_ordii
ENSRNOG00000017647	Zc3h8	79	73.262	ENSETEG00000016560	ZC3H8	81	73.262	Echinops_telfairi
ENSRNOG00000017647	Zc3h8	99	73.355	ENSEASG00005006490	ZC3H8	99	74.013	Equus_asinus_asinus
ENSRNOG00000017647	Zc3h8	99	73.355	ENSECAG00000022765	ZC3H8	99	74.013	Equus_caballus
ENSRNOG00000017647	Zc3h8	99	64.918	ENSEEUG00000006984	ZC3H8	99	64.918	Erinaceus_europaeus
ENSRNOG00000017647	Zc3h8	99	70.968	ENSFCAG00000008088	ZC3H8	99	71.613	Felis_catus
ENSRNOG00000017647	Zc3h8	100	72.078	ENSFDAG00000001021	ZC3H8	100	72.078	Fukomys_damarensis
ENSRNOG00000017647	Zc3h8	100	73.770	ENSGGOG00000009004	ZC3H8	100	73.770	Gorilla_gorilla
ENSRNOG00000017647	Zc3h8	100	69.649	ENSHGLG00000008367	ZC3H8	100	69.649	Heterocephalus_glaber_female
ENSRNOG00000017647	Zc3h8	55	78.698	ENSHGLG00100017277	-	100	78.698	Heterocephalus_glaber_male
ENSRNOG00000017647	Zc3h8	100	74.510	ENSSTOG00000006347	ZC3H8	100	74.510	Ictidomys_tridecemlineatus
ENSRNOG00000017647	Zc3h8	99	74.342	ENSLAFG00000004675	ZC3H8	99	74.342	Loxodonta_africana
ENSRNOG00000017647	Zc3h8	100	72.131	ENSMFAG00000031522	ZC3H8	100	73.203	Macaca_fascicularis
ENSRNOG00000017647	Zc3h8	100	72.459	ENSMMUG00000044163	ZC3H8	100	73.529	Macaca_mulatta
ENSRNOG00000017647	Zc3h8	100	72.131	ENSMNEG00000034502	ZC3H8	100	73.203	Macaca_nemestrina
ENSRNOG00000017647	Zc3h8	100	71.803	ENSMLEG00000029980	ZC3H8	100	72.876	Mandrillus_leucophaeus
ENSRNOG00000017647	Zc3h8	100	85.948	ENSMAUG00000012509	Zc3h8	100	85.948	Mesocricetus_auratus
ENSRNOG00000017647	Zc3h8	100	76.144	ENSMICG00000045551	ZC3H8	100	76.797	Microcebus_murinus
ENSRNOG00000017647	Zc3h8	100	84.262	ENSMOCG00000015035	Zc3h8	100	84.262	Microtus_ochrogaster
ENSRNOG00000017647	Zc3h8	100	90.164	MGP_CAROLIEiJ_G0024276	Zc3h8	100	90.164	Mus_caroli
ENSRNOG00000017647	Zc3h8	100	90.492	ENSMUSG00000027387	Zc3h8	100	90.492	Mus_musculus
ENSRNOG00000017647	Zc3h8	100	90.164	MGP_PahariEiJ_G0025721	Zc3h8	100	90.164	Mus_pahari
ENSRNOG00000017647	Zc3h8	100	90.492	MGP_SPRETEiJ_G0025196	Zc3h8	100	90.492	Mus_spretus
ENSRNOG00000017647	Zc3h8	99	73.548	ENSMPUG00000009562	ZC3H8	99	73.548	Mustela_putorius_furo
ENSRNOG00000017647	Zc3h8	90	66.071	ENSMLUG00000004890	ZC3H8	100	66.667	Myotis_lucifugus
ENSRNOG00000017647	Zc3h8	100	81.699	ENSNGAG00000010427	Zc3h8	100	81.699	Nannospalax_galili
ENSRNOG00000017647	Zc3h8	100	74.754	ENSNLEG00000001619	ZC3H8	100	74.754	Nomascus_leucogenys
ENSRNOG00000017647	Zc3h8	90	68.000	ENSOPRG00000011183	ZC3H8	99	68.000	Ochotona_princeps
ENSRNOG00000017647	Zc3h8	100	70.261	ENSODEG00000006594	ZC3H8	100	70.261	Octodon_degus
ENSRNOG00000017647	Zc3h8	99	71.947	ENSOCUG00000011253	ZC3H8	88	71.947	Oryctolagus_cuniculus
ENSRNOG00000017647	Zc3h8	100	70.192	ENSOGAG00000002554	ZC3H8	100	70.192	Otolemur_garnettii
ENSRNOG00000017647	Zc3h8	99	70.395	ENSOARG00000014475	ZC3H8	99	70.395	Ovis_aries
ENSRNOG00000017647	Zc3h8	100	73.443	ENSPPAG00000028071	ZC3H8	100	73.443	Pan_paniscus
ENSRNOG00000017647	Zc3h8	99	71.290	ENSPPRG00000005648	ZC3H8	99	71.935	Panthera_pardus
ENSRNOG00000017647	Zc3h8	99	71.290	ENSPTIG00000016697	ZC3H8	99	71.935	Panthera_tigris_altaica
ENSRNOG00000017647	Zc3h8	100	73.443	ENSPTRG00000012362	ZC3H8	100	73.443	Pan_troglodytes
ENSRNOG00000017647	Zc3h8	100	72.131	ENSPANG00000016995	ZC3H8	100	73.203	Papio_anubis
ENSRNOG00000017647	Zc3h8	97	81.046	ENSPEMG00000011068	Zc3h8	97	81.046	Peromyscus_maniculatus_bairdii
ENSRNOG00000017647	Zc3h8	99	73.355	ENSPPYG00000012165	ZC3H8	99	73.355	Pongo_abelii
ENSRNOG00000017647	Zc3h8	100	55.882	ENSPCAG00000015426	ZC3H8	100	55.882	Procavia_capensis
ENSRNOG00000017647	Zc3h8	100	76.797	ENSPCOG00000021690	ZC3H8	100	76.797	Propithecus_coquereli
ENSRNOG00000017647	Zc3h8	74	77.515	ENSPVAG00000003510	ZC3H8	76	77.515	Pteropus_vampyrus
ENSRNOG00000017647	Zc3h8	100	73.203	ENSRBIG00000027345	ZC3H8	100	73.203	Rhinopithecus_bieti
ENSRNOG00000017647	Zc3h8	100	73.529	ENSRROG00000039459	ZC3H8	100	73.529	Rhinopithecus_roxellana
ENSRNOG00000017647	Zc3h8	100	67.628	ENSSBOG00000028167	ZC3H8	100	67.628	Saimiri_boliviensis_boliviensis
ENSRNOG00000017647	Zc3h8	91	67.384	ENSSARG00000012883	ZC3H8	99	67.384	Sorex_araneus
ENSRNOG00000017647	Zc3h8	85	70.229	ENSSSCG00000008099	ZC3H8	97	70.992	Sus_scrofa
ENSRNOG00000017647	Zc3h8	59	81.333	ENSTBEG00000015547	-	68	81.333	Tupaia_belangeri
ENSRNOG00000017647	Zc3h8	85	71.103	ENSTTRG00000013153	ZC3H8	85	71.103	Tursiops_truncatus
ENSRNOG00000017647	Zc3h8	99	73.355	ENSUAMG00000002411	ZC3H8	99	73.355	Ursus_americanus
ENSRNOG00000017647	Zc3h8	99	74.342	ENSUMAG00000008665	ZC3H8	99	74.342	Ursus_maritimus
ENSRNOG00000017647	Zc3h8	100	73.203	ENSVPAG00000005911	ZC3H8	100	74.183	Vicugna_pacos
ENSRNOG00000017647	Zc3h8	99	74.671	ENSVVUG00000028659	ZC3H8	99	74.671	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0008023	transcription elongation factor complex	-	IEA	Component
GO:0008023	transcription elongation factor complex	-	ISO	Component
GO:0015030	Cajal body	-	IEA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0033085	negative regulation of T cell differentiation in thymus	-	IEA	Process
GO:0033085	negative regulation of T cell differentiation in thymus	-	ISO	Process
GO:0035327	transcriptionally active chromatin	-	IEA	Component
GO:0035327	transcriptionally active chromatin	-	ISO	Component
GO:0035363	histone locus body	-	IEA	Component
GO:0035363	histone locus body	-	ISO	Component
GO:0042795	snRNA transcription by RNA polymerase II	-	IEA	Process
GO:0042795	snRNA transcription by RNA polymerase II	-	ISO	Process
GO:0042796	snRNA transcription by RNA polymerase III	-	IEA	Process
GO:0042796	snRNA transcription by RNA polymerase III	-	ISO	Process
GO:0043029	T cell homeostasis	-	IEA	Process
GO:0043029	T cell homeostasis	-	ISO	Process
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045945	positive regulation of transcription by RNA polymerase III	-	IEA	Process
GO:0045945	positive regulation of transcription by RNA polymerase III	-	ISO	Process
GO:0046677	response to antibiotic	-	IEA	Process
GO:0046677	response to antibiotic	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0070245	positive regulation of thymocyte apoptotic process	-	IEA	Process
GO:0070245	positive regulation of thymocyte apoptotic process	-	ISO	Process