EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017669 (Gene tree)
Gene ID: 310707
Gene Symbol: Chd1l
Alias: LOC310707
Full Name: chromodomain helicase DNA binding protein 1-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 55184 bases
Position: chr2:199716713-199771896
Accession: 1311935
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000048925	ResIII	PF04851.15	1.1e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000043937	-	2712	XM_006233018	ENSRNOP00000048925	903 (aa)	XP_006233080	D4ACG6

Gene Model

Click here to download ENSRNOG00000017669's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017669's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000017669	Chd1l	51	30.664	ENSRNOG00000013148	Rad54l	68	30.859
ENSRNOG00000017669	Chd1l	51	39.299	ENSRNOG00000047104	Hells	64	38.122
ENSRNOG00000017669	Chd1l	62	44.082	ENSRNOG00000003762	Smarca1	54	44.082
ENSRNOG00000017669	Chd1l	51	39.299	ENSRNOG00000047692	LOC100911660	66	38.122
ENSRNOG00000017669	Chd1l	62	43.396	ENSRNOG00000018149	Smarca5	57	43.396

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017669	Chd1l	99	86.696	ENSG00000131778	CHD1L	100	87.580	Homo_sapiens
ENSRNOG00000017669	Chd1l	96	64.747	ENSAPOG00000001539	chd1l	98	64.631	Acanthochromis_polyacanthus
ENSRNOG00000017669	Chd1l	99	85.683	ENSAMEG00000017063	CHD1L	99	84.795	Ailuropoda_melanoleuca
ENSRNOG00000017669	Chd1l	95	66.317	ENSACIG00000001164	chd1l	98	65.820	Amphilophus_citrinellus
ENSRNOG00000017669	Chd1l	98	64.286	ENSAOCG00000014510	chd1l	86	64.294	Amphiprion_ocellaris
ENSRNOG00000017669	Chd1l	95	63.140	ENSAPEG00000017450	chd1l	97	61.781	Amphiprion_percula
ENSRNOG00000017669	Chd1l	96	62.687	ENSAPEG00000017573	chd1l	94	62.916	Amphiprion_percula
ENSRNOG00000017669	Chd1l	98	64.126	ENSATEG00000013058	chd1l	94	64.077	Anabas_testudineus
ENSRNOG00000017669	Chd1l	95	72.982	ENSAPLG00000009976	CHD1L	96	72.018	Anas_platyrhynchos
ENSRNOG00000017669	Chd1l	97	67.297	ENSACAG00000017686	CHD1L	99	66.630	Anolis_carolinensis
ENSRNOG00000017669	Chd1l	97	87.372	ENSANAG00000024347	CHD1L	99	85.066	Aotus_nancymaae
ENSRNOG00000017669	Chd1l	98	64.399	ENSACLG00000019304	chd1l	96	64.505	Astatotilapia_calliptera
ENSRNOG00000017669	Chd1l	99	58.732	ENSAMXG00000012367	chd1l	89	57.675	Astyanax_mexicanus
ENSRNOG00000017669	Chd1l	99	85.667	ENSBTAG00000020831	CHD1L	99	85.111	Bos_taurus
ENSRNOG00000017669	Chd1l	99	85.920	ENSCJAG00000002406	CHD1L	99	85.144	Callithrix_jacchus
ENSRNOG00000017669	Chd1l	99	82.682	ENSCAFG00000010944	CHD1L	98	81.808	Canis_familiaris
ENSRNOG00000017669	Chd1l	99	85.218	ENSCAFG00020020121	CHD1L	99	84.323	Canis_lupus_dingo
ENSRNOG00000017669	Chd1l	99	85.061	ENSCHIG00000013871	CHD1L	99	84.950	Capra_hircus
ENSRNOG00000017669	Chd1l	96	87.384	ENSTSYG00000003005	CHD1L	100	86.574	Carlito_syrichta
ENSRNOG00000017669	Chd1l	98	84.893	ENSCPOG00000009000	CHD1L	100	83.518	Cavia_porcellus
ENSRNOG00000017669	Chd1l	99	83.259	ENSCCAG00000036079	CHD1L	99	82.483	Cebus_capucinus
ENSRNOG00000017669	Chd1l	99	86.807	ENSCATG00000031044	CHD1L	99	86.031	Cercocebus_atys
ENSRNOG00000017669	Chd1l	98	85.908	ENSCLAG00000000880	CHD1L	100	85.161	Chinchilla_lanigera
ENSRNOG00000017669	Chd1l	99	86.918	ENSCSAG00000018386	CHD1L	99	86.142	Chlorocebus_sabaeus
ENSRNOG00000017669	Chd1l	97	75.227	ENSCPBG00000002600	CHD1L	98	75.000	Chrysemys_picta_bellii
ENSRNOG00000017669	Chd1l	99	85.477	ENSCANG00000020239	CHD1L	99	84.701	Colobus_angolensis_palliatus
ENSRNOG00000017669	Chd1l	99	90.011	ENSCGRG00001021624	Chd1l	99	88.815	Cricetulus_griseus_chok1gshd
ENSRNOG00000017669	Chd1l	95	90.360	ENSCGRG00000007554	Chd1l	99	89.315	Cricetulus_griseus_crigri
ENSRNOG00000017669	Chd1l	98	63.892	ENSCVAG00000002595	chd1l	91	63.284	Cyprinodon_variegatus
ENSRNOG00000017669	Chd1l	97	65.753	ENSDARG00000015471	chd1l	86	65.095	Danio_rerio
ENSRNOG00000017669	Chd1l	99	85.350	ENSDNOG00000019504	CHD1L	99	84.795	Dasypus_novemcinctus
ENSRNOG00000017669	Chd1l	100	81.326	ENSDORG00000013555	Chd1l	100	80.552	Dipodomys_ordii
ENSRNOG00000017669	Chd1l	88	78.534	ENSETEG00000008445	CHD1L	89	78.010	Echinops_telfairi
ENSRNOG00000017669	Chd1l	69	62.500	ENSEBUG00000005791	chd1l	81	65.517	Eptatretus_burgeri
ENSRNOG00000017669	Chd1l	99	85.890	ENSEASG00005007364	CHD1L	99	86.473	Equus_asinus_asinus
ENSRNOG00000017669	Chd1l	99	85.778	ENSECAG00000008915	CHD1L	99	86.353	Equus_caballus
ENSRNOG00000017669	Chd1l	96	55.263	ENSELUG00000016844	chd1l	84	53.735	Esox_lucius
ENSRNOG00000017669	Chd1l	99	84.667	ENSFCAG00000007777	CHD1L	99	83.889	Felis_catus
ENSRNOG00000017669	Chd1l	99	71.014	ENSFALG00000006087	CHD1L	98	71.047	Ficedula_albicollis
ENSRNOG00000017669	Chd1l	94	86.808	ENSFDAG00000012431	CHD1L	100	86.259	Fukomys_damarensis
ENSRNOG00000017669	Chd1l	98	63.616	ENSFHEG00000012420	chd1l	87	63.842	Fundulus_heteroclitus
ENSRNOG00000017669	Chd1l	99	71.221	ENSGALG00000015038	CHD1L	98	70.885	Gallus_gallus
ENSRNOG00000017669	Chd1l	98	64.262	ENSGAFG00000018198	chd1l	98	61.327	Gambusia_affinis
ENSRNOG00000017669	Chd1l	57	66.538	ENSGACG00000014042	chd1l	99	66.538	Gasterosteus_aculeatus
ENSRNOG00000017669	Chd1l	95	75.935	ENSGAGG00000014432	CHD1L	96	75.818	Gopherus_agassizii
ENSRNOG00000017669	Chd1l	99	86.364	ENSGGOG00000001067	CHD1L	99	85.588	Gorilla_gorilla
ENSRNOG00000017669	Chd1l	98	64.286	ENSHBUG00000007464	chd1l	96	64.821	Haplochromis_burtoni
ENSRNOG00000017669	Chd1l	100	83.867	ENSHGLG00000008933	CHD1L	100	84.275	Heterocephalus_glaber_female
ENSRNOG00000017669	Chd1l	95	83.430	ENSHGLG00100007155	CHD1L	100	83.759	Heterocephalus_glaber_male
ENSRNOG00000017669	Chd1l	94	63.164	ENSHCOG00000012787	chd1l	92	63.164	Hippocampus_comes
ENSRNOG00000017669	Chd1l	99	60.582	ENSIPUG00000022617	chd1l	87	60.089	Ictalurus_punctatus
ENSRNOG00000017669	Chd1l	100	77.741	ENSSTOG00000007032	CHD1L	100	77.741	Ictidomys_tridecemlineatus
ENSRNOG00000017669	Chd1l	97	65.222	ENSKMAG00000014358	chd1l	85	65.108	Kryptolebias_marmoratus
ENSRNOG00000017669	Chd1l	97	64.155	ENSLBEG00000023845	chd1l	96	63.691	Labrus_bergylta
ENSRNOG00000017669	Chd1l	96	64.123	ENSLACG00000006262	CHD1L	87	63.423	Latimeria_chalumnae
ENSRNOG00000017669	Chd1l	95	69.814	ENSLOCG00000010574	chd1l	86	69.116	Lepisosteus_oculatus
ENSRNOG00000017669	Chd1l	95	87.063	ENSLAFG00000018136	CHD1L	100	86.079	Loxodonta_africana
ENSRNOG00000017669	Chd1l	96	86.766	ENSMFAG00000043562	CHD1L	100	87.336	Macaca_fascicularis
ENSRNOG00000017669	Chd1l	99	86.696	ENSMMUG00000009024	CHD1L	99	85.920	Macaca_mulatta
ENSRNOG00000017669	Chd1l	99	86.807	ENSMNEG00000039905	CHD1L	99	86.031	Macaca_nemestrina
ENSRNOG00000017669	Chd1l	99	87.029	ENSMLEG00000030900	CHD1L	99	86.253	Mandrillus_leucophaeus
ENSRNOG00000017669	Chd1l	98	62.950	ENSMAMG00000012822	chd1l	98	61.850	Mastacembelus_armatus
ENSRNOG00000017669	Chd1l	98	64.399	ENSMZEG00005020830	chd1l	88	64.399	Maylandia_zebra
ENSRNOG00000017669	Chd1l	96	71.132	ENSMGAG00000014304	CHD1L	99	71.016	Meleagris_gallopavo
ENSRNOG00000017669	Chd1l	99	86.459	ENSMICG00000002497	CHD1L	99	85.350	Microcebus_murinus
ENSRNOG00000017669	Chd1l	100	91.251	ENSMOCG00000006305	Chd1l	100	90.144	Microtus_ochrogaster
ENSRNOG00000017669	Chd1l	96	61.239	ENSMMOG00000005964	chd1l	90	60.780	Mola_mola
ENSRNOG00000017669	Chd1l	99	78.643	ENSMODG00000018717	CHD1L	99	78.754	Monodelphis_domestica
ENSRNOG00000017669	Chd1l	98	64.059	ENSMALG00000014675	chd1l	86	64.059	Monopterus_albus
ENSRNOG00000017669	Chd1l	100	93.488	MGP_CAROLIEiJ_G0025401	Chd1l	100	93.157	Mus_caroli
ENSRNOG00000017669	Chd1l	100	93.702	ENSMUSG00000028089	Chd1l	100	93.370	Mus_musculus
ENSRNOG00000017669	Chd1l	100	93.473	MGP_PahariEiJ_G0026845	Chd1l	100	93.142	Mus_pahari
ENSRNOG00000017669	Chd1l	100	93.702	MGP_SPRETEiJ_G0026347	Chd1l	100	93.370	Mus_spretus
ENSRNOG00000017669	Chd1l	99	84.967	ENSMPUG00000000615	CHD1L	99	84.855	Mustela_putorius_furo
ENSRNOG00000017669	Chd1l	99	82.508	ENSMLUG00000007573	CHD1L	99	82.178	Myotis_lucifugus
ENSRNOG00000017669	Chd1l	97	85.535	ENSNGAG00000000908	Chd1l	99	84.396	Nannospalax_galili
ENSRNOG00000017669	Chd1l	95	63.426	ENSNBRG00000006021	chd1l	93	63.353	Neolamprologus_brichardi
ENSRNOG00000017669	Chd1l	99	85.920	ENSNLEG00000000179	CHD1L	99	85.255	Nomascus_leucogenys
ENSRNOG00000017669	Chd1l	95	74.040	ENSOPRG00000006973	CHD1L	99	73.225	Ochotona_princeps
ENSRNOG00000017669	Chd1l	100	80.663	ENSODEG00000002494	CHD1L	100	81.236	Octodon_degus
ENSRNOG00000017669	Chd1l	98	64.439	ENSONIG00000003183	chd1l	89	64.626	Oreochromis_niloticus
ENSRNOG00000017669	Chd1l	86	71.831	ENSOANG00000003068	CHD1L	91	72.324	Ornithorhynchus_anatinus
ENSRNOG00000017669	Chd1l	100	81.579	ENSOCUG00000009336	CHD1L	99	80.592	Oryctolagus_cuniculus
ENSRNOG00000017669	Chd1l	95	63.605	ENSORLG00000003673	chd1l	93	62.907	Oryzias_latipes
ENSRNOG00000017669	Chd1l	97	62.799	ENSORLG00020005123	chd1l	98	62.857	Oryzias_latipes_hni
ENSRNOG00000017669	Chd1l	99	61.778	ENSORLG00015001680	chd1l	99	62.302	Oryzias_latipes_hsok
ENSRNOG00000017669	Chd1l	84	58.132	ENSOMEG00000006109	chd1l	86	57.895	Oryzias_melastigma
ENSRNOG00000017669	Chd1l	99	84.538	ENSOGAG00000008775	CHD1L	99	83.648	Otolemur_garnettii
ENSRNOG00000017669	Chd1l	99	84.761	ENSOARG00000020547	CHD1L	99	85.979	Ovis_aries
ENSRNOG00000017669	Chd1l	97	86.089	ENSPPAG00000039193	CHD1L	100	87.814	Pan_paniscus
ENSRNOG00000017669	Chd1l	99	85.222	ENSPPRG00000010258	CHD1L	99	84.000	Panthera_pardus
ENSRNOG00000017669	Chd1l	98	87.177	ENSPTRG00000001220	CHD1L	99	86.475	Pan_troglodytes
ENSRNOG00000017669	Chd1l	99	87.029	ENSPANG00000009170	CHD1L	99	86.253	Papio_anubis
ENSRNOG00000017669	Chd1l	99	64.103	ENSPKIG00000022166	chd1l	95	63.228	Paramormyrops_kingsleyae
ENSRNOG00000017669	Chd1l	97	75.142	ENSPSIG00000012595	CHD1L	98	73.913	Pelodiscus_sinensis
ENSRNOG00000017669	Chd1l	99	89.150	ENSPEMG00000013528	Chd1l	100	88.287	Peromyscus_maniculatus_bairdii
ENSRNOG00000017669	Chd1l	93	79.809	ENSPCIG00000030409	CHD1L	100	80.048	Phascolarctos_cinereus
ENSRNOG00000017669	Chd1l	98	64.633	ENSPFOG00000015948	chd1l	86	64.633	Poecilia_formosa
ENSRNOG00000017669	Chd1l	98	64.892	ENSPLAG00000015145	chd1l	98	63.481	Poecilia_latipinna
ENSRNOG00000017669	Chd1l	98	64.439	ENSPMEG00000008720	chd1l	91	64.779	Poecilia_mexicana
ENSRNOG00000017669	Chd1l	96	63.279	ENSPREG00000017885	chd1l	97	62.587	Poecilia_reticulata
ENSRNOG00000017669	Chd1l	98	87.402	ENSPPYG00000000946	CHD1L	99	86.127	Pongo_abelii
ENSRNOG00000017669	Chd1l	99	74.029	ENSPCAG00000005959	CHD1L	97	74.521	Procavia_capensis
ENSRNOG00000017669	Chd1l	95	78.996	ENSPVAG00000006084	CHD1L	100	78.296	Pteropus_vampyrus
ENSRNOG00000017669	Chd1l	97	63.923	ENSPNYG00000013001	chd1l	98	63.923	Pundamilia_nyererei
ENSRNOG00000017669	Chd1l	98	64.859	ENSPNAG00000011881	chd1l	87	63.898	Pygocentrus_nattereri
ENSRNOG00000017669	Chd1l	99	85.477	ENSRBIG00000041272	CHD1L	99	84.701	Rhinopithecus_bieti
ENSRNOG00000017669	Chd1l	97	85.991	ENSRROG00000041354	CHD1L	98	85.114	Rhinopithecus_roxellana
ENSRNOG00000017669	Chd1l	99	74.778	ENSSHAG00000017395	CHD1L	99	74.889	Sarcophilus_harrisii
ENSRNOG00000017669	Chd1l	98	65.607	ENSSFOG00015003649	chd1l	98	64.147	Scleropages_formosus
ENSRNOG00000017669	Chd1l	97	62.247	ENSSMAG00000019377	chd1l	94	61.672	Scophthalmus_maximus
ENSRNOG00000017669	Chd1l	95	64.028	ENSSDUG00000019831	chd1l	95	64.144	Seriola_dumerili
ENSRNOG00000017669	Chd1l	95	64.494	ENSSLDG00000012714	chd1l	95	64.494	Seriola_lalandi_dorsalis
ENSRNOG00000017669	Chd1l	99	71.557	ENSSPUG00000016865	CHD1L	99	71.669	Sphenodon_punctatus
ENSRNOG00000017669	Chd1l	98	64.100	ENSSPAG00000017653	chd1l	92	64.487	Stegastes_partitus
ENSRNOG00000017669	Chd1l	98	83.427	ENSSSCG00000006701	CHD1L	97	84.430	Sus_scrofa
ENSRNOG00000017669	Chd1l	95	72.885	ENSTGUG00000013392	-	100	72.159	Taeniopygia_guttata
ENSRNOG00000017669	Chd1l	95	59.698	ENSTNIG00000004902	chd1l	99	58.879	Tetraodon_nigroviridis
ENSRNOG00000017669	Chd1l	96	83.487	ENSTTRG00000011711	CHD1L	100	83.372	Tursiops_truncatus
ENSRNOG00000017669	Chd1l	99	85.017	ENSUAMG00000021991	CHD1L	99	84.240	Ursus_americanus
ENSRNOG00000017669	Chd1l	99	84.795	ENSUMAG00000009733	CHD1L	99	83.907	Ursus_maritimus
ENSRNOG00000017669	Chd1l	99	84.368	ENSVVUG00000007316	CHD1L	94	85.223	Vulpes_vulpes
ENSRNOG00000017669	Chd1l	97	62.386	ENSXCOG00000008336	chd1l	86	62.386	Xiphophorus_couchianus
ENSRNOG00000017669	Chd1l	98	64.892	ENSXMAG00000015898	chd1l	98	59.170	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	ISO	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006338	chromatin remodeling	-	IEA	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0016887	ATPase activity	-	ISO	Function
GO:0032508	DNA duplex unwinding	-	IEA	Process