EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017724 (Gene tree)
Gene ID: 292019
Gene Symbol: Sf3b3
Alias: LOC292019
Full Name: splicing factor 3b%2C subunit 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 37496 bases
Position: chr19:43392085-43429580
Accession: 1311636
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000023854	CPSF_A	PF03178.15	6e-102	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000023854	-	4506	XM_006255620	ENSRNOP00000023854	1217 (aa)	XP_006255682	E9PT66

Gene Model

Click here to download ENSRNOG00000017724's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017724's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017724	Sf3b3	100	99.918	ENSG00000189091	SF3B3	100	100.000	Homo_sapiens
ENSRNOG00000017724	Sf3b3	96	93.424	ENSAPOG00000006172	sf3b3	98	93.424	Acanthochromis_polyacanthus
ENSRNOG00000017724	Sf3b3	100	99.590	ENSAMEG00000002187	SF3B3	100	99.590	Ailuropoda_melanoleuca
ENSRNOG00000017724	Sf3b3	92	90.536	ENSACIG00000016487	sf3b3	100	90.536	Amphilophus_citrinellus
ENSRNOG00000017724	Sf3b3	100	93.344	ENSAOCG00000007158	sf3b3	100	93.344	Amphiprion_ocellaris
ENSRNOG00000017724	Sf3b3	100	93.344	ENSAPEG00000022786	sf3b3	100	93.344	Amphiprion_percula
ENSRNOG00000017724	Sf3b3	100	93.426	ENSATEG00000013708	sf3b3	100	93.426	Anabas_testudineus
ENSRNOG00000017724	Sf3b3	81	98.075	ENSAPLG00000004996	SF3B3	100	98.075	Anas_platyrhynchos
ENSRNOG00000017724	Sf3b3	100	98.521	ENSACAG00000001817	SF3B3	100	98.521	Anolis_carolinensis
ENSRNOG00000017724	Sf3b3	100	99.918	ENSANAG00000028001	SF3B3	100	99.918	Aotus_nancymaae
ENSRNOG00000017724	Sf3b3	96	93.083	ENSACLG00000022555	sf3b3	98	93.083	Astatotilapia_calliptera
ENSRNOG00000017724	Sf3b3	100	93.098	ENSAMXG00000003410	sf3b3	100	93.098	Astyanax_mexicanus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSBTAG00000010627	SF3B3	100	99.918	Bos_taurus
ENSRNOG00000017724	Sf3b3	100	60.537	WBGene00019323	teg-4	100	60.537	Caenorhabditis_elegans
ENSRNOG00000017724	Sf3b3	100	99.918	ENSCJAG00000014773	SF3B3	99	99.918	Callithrix_jacchus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSCAFG00000020151	SF3B3	100	99.836	Canis_familiaris
ENSRNOG00000017724	Sf3b3	100	99.836	ENSCAFG00020020912	SF3B3	100	99.836	Canis_lupus_dingo
ENSRNOG00000017724	Sf3b3	100	99.836	ENSCHIG00000019822	SF3B3	100	99.836	Capra_hircus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSTSYG00000007910	SF3B3	100	99.918	Carlito_syrichta
ENSRNOG00000017724	Sf3b3	84	89.016	ENSCAPG00000001484	SF3B3	92	89.016	Cavia_aperea
ENSRNOG00000017724	Sf3b3	100	98.603	ENSCPOG00000000586	SF3B3	100	98.603	Cavia_porcellus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSCCAG00000017736	SF3B3	100	99.918	Cebus_capucinus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSCATG00000036562	SF3B3	100	99.918	Cercocebus_atys
ENSRNOG00000017724	Sf3b3	100	99.918	ENSCLAG00000003921	SF3B3	100	99.918	Chinchilla_lanigera
ENSRNOG00000017724	Sf3b3	100	99.836	ENSCSAG00000004371	SF3B3	100	99.836	Chlorocebus_sabaeus
ENSRNOG00000017724	Sf3b3	90	92.835	ENSCHOG00000001878	SF3B3	90	92.835	Choloepus_hoffmanni
ENSRNOG00000017724	Sf3b3	100	98.767	ENSCPBG00000015853	SF3B3	100	98.767	Chrysemys_picta_bellii
ENSRNOG00000017724	Sf3b3	100	80.706	ENSCING00000001342	-	100	80.706	Ciona_intestinalis
ENSRNOG00000017724	Sf3b3	99	79.392	ENSCSAVG00000011454	-	100	79.392	Ciona_savignyi
ENSRNOG00000017724	Sf3b3	100	96.631	ENSCANG00000042920	SF3B3	100	96.631	Colobus_angolensis_palliatus
ENSRNOG00000017724	Sf3b3	100	100.000	ENSCGRG00001015908	Sf3b3	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000017724	Sf3b3	100	100.000	ENSCGRG00000010180	Sf3b3	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000017724	Sf3b3	82	92.415	ENSCSEG00000014192	sf3b3	99	92.415	Cynoglossus_semilaevis
ENSRNOG00000017724	Sf3b3	100	92.523	ENSCVAG00000010459	sf3b3	100	92.523	Cyprinodon_variegatus
ENSRNOG00000017724	Sf3b3	100	93.344	ENSDARG00000103553	sf3b3	100	93.344	Danio_rerio
ENSRNOG00000017724	Sf3b3	85	99.904	ENSDNOG00000043626	SF3B3	100	99.904	Dasypus_novemcinctus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSDORG00000014176	Sf3b3	100	99.918	Dipodomys_ordii
ENSRNOG00000017724	Sf3b3	100	75.061	FBgn0035162	Sf3b3	100	75.061	Drosophila_melanogaster
ENSRNOG00000017724	Sf3b3	84	100.000	ENSETEG00000002729	SF3B3	84	100.000	Echinops_telfairi
ENSRNOG00000017724	Sf3b3	100	87.757	ENSEBUG00000006117	sf3b3	100	87.757	Eptatretus_burgeri
ENSRNOG00000017724	Sf3b3	100	99.836	ENSEASG00005013376	SF3B3	100	99.836	Equus_asinus_asinus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSECAG00000014053	SF3B3	100	99.836	Equus_caballus
ENSRNOG00000017724	Sf3b3	93	99.464	ENSEEUG00000015611	SF3B3	93	99.464	Erinaceus_europaeus
ENSRNOG00000017724	Sf3b3	100	91.311	ENSELUG00000015417	sf3b3	100	91.311	Esox_lucius
ENSRNOG00000017724	Sf3b3	100	99.836	ENSFCAG00000009487	SF3B3	100	99.836	Felis_catus
ENSRNOG00000017724	Sf3b3	100	98.850	ENSFALG00000007372	SF3B3	100	98.850	Ficedula_albicollis
ENSRNOG00000017724	Sf3b3	100	99.836	ENSFDAG00000002608	SF3B3	100	99.836	Fukomys_damarensis
ENSRNOG00000017724	Sf3b3	100	92.933	ENSFHEG00000017824	sf3b3	100	92.933	Fundulus_heteroclitus
ENSRNOG00000017724	Sf3b3	100	89.327	ENSGMOG00000008139	sf3b3	100	89.327	Gadus_morhua
ENSRNOG00000017724	Sf3b3	100	99.096	ENSGALG00000002531	SF3B3	100	99.096	Gallus_gallus
ENSRNOG00000017724	Sf3b3	100	92.523	ENSGAFG00000015206	sf3b3	100	92.523	Gambusia_affinis
ENSRNOG00000017724	Sf3b3	100	92.939	ENSGACG00000002646	sf3b3	100	92.939	Gasterosteus_aculeatus
ENSRNOG00000017724	Sf3b3	96	98.804	ENSGAGG00000006746	SF3B3	97	98.804	Gopherus_agassizii
ENSRNOG00000017724	Sf3b3	100	99.918	ENSGGOG00000003246	SF3B3	100	99.918	Gorilla_gorilla
ENSRNOG00000017724	Sf3b3	92	85.625	ENSHBUG00000005960	sf3b3	100	86.786	Haplochromis_burtoni
ENSRNOG00000017724	Sf3b3	100	99.918	ENSHGLG00000010135	SF3B3	100	99.918	Heterocephalus_glaber_female
ENSRNOG00000017724	Sf3b3	100	97.729	ENSHGLG00100011148	SF3B3	100	97.729	Heterocephalus_glaber_male
ENSRNOG00000017724	Sf3b3	100	92.605	ENSHCOG00000011981	sf3b3	100	92.605	Hippocampus_comes
ENSRNOG00000017724	Sf3b3	100	93.016	ENSIPUG00000020435	sf3b3	100	93.016	Ictalurus_punctatus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSSTOG00000007065	SF3B3	100	99.918	Ictidomys_tridecemlineatus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSJJAG00000003948	Sf3b3	100	99.918	Jaculus_jaculus
ENSRNOG00000017724	Sf3b3	100	90.715	ENSKMAG00000004066	sf3b3	99	92.912	Kryptolebias_marmoratus
ENSRNOG00000017724	Sf3b3	100	92.851	ENSLBEG00000018302	sf3b3	100	92.851	Labrus_bergylta
ENSRNOG00000017724	Sf3b3	98	92.359	ENSLACG00000012501	SF3B3	99	92.359	Latimeria_chalumnae
ENSRNOG00000017724	Sf3b3	100	94.007	ENSLOCG00000007566	sf3b3	100	94.007	Lepisosteus_oculatus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSLAFG00000012219	SF3B3	100	99.836	Loxodonta_africana
ENSRNOG00000017724	Sf3b3	100	99.918	ENSMFAG00000045487	SF3B3	100	99.918	Macaca_fascicularis
ENSRNOG00000017724	Sf3b3	100	99.918	ENSMMUG00000017812	SF3B3	100	99.918	Macaca_mulatta
ENSRNOG00000017724	Sf3b3	100	99.918	ENSMNEG00000033385	SF3B3	100	99.918	Macaca_nemestrina
ENSRNOG00000017724	Sf3b3	100	96.385	ENSMLEG00000043891	SF3B3	97	99.682	Mandrillus_leucophaeus
ENSRNOG00000017724	Sf3b3	100	93.426	ENSMAMG00000016837	sf3b3	100	93.426	Mastacembelus_armatus
ENSRNOG00000017724	Sf3b3	100	93.016	ENSMZEG00005010836	sf3b3	100	93.016	Maylandia_zebra
ENSRNOG00000017724	Sf3b3	89	90.102	ENSMZEG00005026015	sf3b3	99	90.102	Maylandia_zebra
ENSRNOG00000017724	Sf3b3	100	99.096	ENSMGAG00000001597	SF3B3	100	99.096	Meleagris_gallopavo
ENSRNOG00000017724	Sf3b3	81	83.069	ENSMAUG00000013618	Sf3b3	95	83.069	Mesocricetus_auratus
ENSRNOG00000017724	Sf3b3	100	98.769	ENSMICG00000001363	SF3B3	100	98.769	Microcebus_murinus
ENSRNOG00000017724	Sf3b3	100	100.000	ENSMOCG00000006108	Sf3b3	100	100.000	Microtus_ochrogaster
ENSRNOG00000017724	Sf3b3	89	90.472	ENSMMOG00000002598	sf3b3	97	90.472	Mola_mola
ENSRNOG00000017724	Sf3b3	100	95.238	ENSMODG00000014363	SF3B3	100	95.238	Monodelphis_domestica
ENSRNOG00000017724	Sf3b3	100	93.098	ENSMALG00000008014	sf3b3	100	93.098	Monopterus_albus
ENSRNOG00000017724	Sf3b3	100	99.918	MGP_CAROLIEiJ_G0031563	Sf3b3	100	99.918	Mus_caroli
ENSRNOG00000017724	Sf3b3	100	100.000	ENSMUSG00000033732	Sf3b3	100	100.000	Mus_musculus
ENSRNOG00000017724	Sf3b3	100	99.918	MGP_SPRETEiJ_G0032681	Sf3b3	100	99.918	Mus_spretus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSMPUG00000010277	SF3B3	100	99.836	Mustela_putorius_furo
ENSRNOG00000017724	Sf3b3	100	99.753	ENSMLUG00000014607	SF3B3	100	99.753	Myotis_lucifugus
ENSRNOG00000017724	Sf3b3	100	99.918	ENSNGAG00000021903	Sf3b3	100	99.918	Nannospalax_galili
ENSRNOG00000017724	Sf3b3	83	97.222	ENSNBRG00000007197	sf3b3	99	97.222	Neolamprologus_brichardi
ENSRNOG00000017724	Sf3b3	100	98.440	ENSNLEG00000016127	SF3B3	99	99.682	Nomascus_leucogenys
ENSRNOG00000017724	Sf3b3	92	98.681	ENSMEUG00000004479	SF3B3	94	98.681	Notamacropus_eugenii
ENSRNOG00000017724	Sf3b3	98	96.647	ENSOPRG00000009847	SF3B3	100	96.647	Ochotona_princeps
ENSRNOG00000017724	Sf3b3	100	99.836	ENSODEG00000014154	SF3B3	100	99.836	Octodon_degus
ENSRNOG00000017724	Sf3b3	100	93.262	ENSONIG00000011198	sf3b3	100	93.262	Oreochromis_niloticus
ENSRNOG00000017724	Sf3b3	100	99.589	ENSOANG00000001161	-	100	99.589	Ornithorhynchus_anatinus
ENSRNOG00000017724	Sf3b3	100	97.535	ENSOCUG00000004139	SF3B3	100	97.535	Oryctolagus_cuniculus
ENSRNOG00000017724	Sf3b3	100	93.098	ENSORLG00000013472	sf3b3	100	93.098	Oryzias_latipes
ENSRNOG00000017724	Sf3b3	100	93.098	ENSORLG00020017473	sf3b3	100	93.098	Oryzias_latipes_hni
ENSRNOG00000017724	Sf3b3	100	93.098	ENSORLG00015007710	sf3b3	100	93.098	Oryzias_latipes_hsok
ENSRNOG00000017724	Sf3b3	100	92.769	ENSOMEG00000014483	sf3b3	100	92.769	Oryzias_melastigma
ENSRNOG00000017724	Sf3b3	100	99.508	ENSOGAG00000016051	SF3B3	100	99.508	Otolemur_garnettii
ENSRNOG00000017724	Sf3b3	100	99.590	ENSOARG00000004816	SF3B3	100	99.590	Ovis_aries
ENSRNOG00000017724	Sf3b3	100	99.918	ENSPPAG00000026807	SF3B3	100	99.918	Pan_paniscus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSPPRG00000001686	SF3B3	100	99.836	Panthera_pardus
ENSRNOG00000017724	Sf3b3	89	96.780	ENSPTIG00000020382	SF3B3	100	96.780	Panthera_tigris_altaica
ENSRNOG00000017724	Sf3b3	100	99.918	ENSPTRG00000008308	SF3B3	100	99.918	Pan_troglodytes
ENSRNOG00000017724	Sf3b3	100	99.918	ENSPANG00000024075	SF3B3	100	99.918	Papio_anubis
ENSRNOG00000017724	Sf3b3	100	92.687	ENSPKIG00000002712	sf3b3	100	92.687	Paramormyrops_kingsleyae
ENSRNOG00000017724	Sf3b3	89	98.896	ENSPSIG00000002232	SF3B3	100	98.896	Pelodiscus_sinensis
ENSRNOG00000017724	Sf3b3	100	100.000	ENSPEMG00000008603	Sf3b3	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000017724	Sf3b3	100	91.865	ENSPMAG00000001793	sf3b3	100	91.865	Petromyzon_marinus
ENSRNOG00000017724	Sf3b3	100	99.589	ENSPCIG00000014927	SF3B3	100	99.589	Phascolarctos_cinereus
ENSRNOG00000017724	Sf3b3	100	92.605	ENSPFOG00000015516	sf3b3	100	92.605	Poecilia_formosa
ENSRNOG00000017724	Sf3b3	100	92.605	ENSPLAG00000014330	sf3b3	100	92.605	Poecilia_latipinna
ENSRNOG00000017724	Sf3b3	100	92.687	ENSPMEG00000019856	sf3b3	100	92.687	Poecilia_mexicana
ENSRNOG00000017724	Sf3b3	81	93.496	ENSPREG00000019669	sf3b3	97	93.496	Poecilia_reticulata
ENSRNOG00000017724	Sf3b3	95	99.805	ENSPPYG00000007539	SF3B3	100	99.805	Pongo_abelii
ENSRNOG00000017724	Sf3b3	100	78.143	ENSPCAG00000002623	SF3B3	100	78.143	Procavia_capensis
ENSRNOG00000017724	Sf3b3	84	100.000	ENSPCOG00000026582	SF3B3	100	100.000	Propithecus_coquereli
ENSRNOG00000017724	Sf3b3	100	99.753	ENSPVAG00000000684	SF3B3	100	99.753	Pteropus_vampyrus
ENSRNOG00000017724	Sf3b3	100	93.098	ENSPNYG00000003528	sf3b3	100	93.098	Pundamilia_nyererei
ENSRNOG00000017724	Sf3b3	100	93.426	ENSPNAG00000015419	sf3b3	100	93.426	Pygocentrus_nattereri
ENSRNOG00000017724	Sf3b3	100	99.918	ENSRBIG00000021904	SF3B3	100	99.918	Rhinopithecus_bieti
ENSRNOG00000017724	Sf3b3	100	99.918	ENSRROG00000045703	SF3B3	100	99.918	Rhinopithecus_roxellana
ENSRNOG00000017724	Sf3b3	100	99.918	ENSSBOG00000029156	SF3B3	100	99.918	Saimiri_boliviensis_boliviensis
ENSRNOG00000017724	Sf3b3	100	99.589	ENSSHAG00000000372	SF3B3	100	99.589	Sarcophilus_harrisii
ENSRNOG00000017724	Sf3b3	100	93.673	ENSSFOG00015012877	sf3b3	100	93.673	Scleropages_formosus
ENSRNOG00000017724	Sf3b3	100	92.769	ENSSMAG00000014386	sf3b3	100	92.769	Scophthalmus_maximus
ENSRNOG00000017724	Sf3b3	100	93.509	ENSSDUG00000021201	sf3b3	100	93.509	Seriola_dumerili
ENSRNOG00000017724	Sf3b3	100	93.426	ENSSLDG00000017532	sf3b3	100	93.426	Seriola_lalandi_dorsalis
ENSRNOG00000017724	Sf3b3	93	100.000	ENSSARG00000006917	SF3B3	93	100.000	Sorex_araneus
ENSRNOG00000017724	Sf3b3	100	98.850	ENSSPUG00000006253	SF3B3	100	98.850	Sphenodon_punctatus
ENSRNOG00000017724	Sf3b3	100	85.620	ENSSPAG00000003125	sf3b3	100	85.620	Stegastes_partitus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSSSCG00000025323	SF3B3	100	99.836	Sus_scrofa
ENSRNOG00000017724	Sf3b3	100	99.015	ENSTGUG00000006082	SF3B3	100	99.015	Taeniopygia_guttata
ENSRNOG00000017724	Sf3b3	89	93.015	ENSTNIG00000004857	sf3b3	100	93.015	Tetraodon_nigroviridis
ENSRNOG00000017724	Sf3b3	93	84.771	ENSTBEG00000002946	SF3B3	100	84.771	Tupaia_belangeri
ENSRNOG00000017724	Sf3b3	100	99.014	ENSTTRG00000005855	SF3B3	100	99.014	Tursiops_truncatus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSUAMG00000006780	SF3B3	100	99.836	Ursus_americanus
ENSRNOG00000017724	Sf3b3	100	99.836	ENSUMAG00000017757	SF3B3	100	99.836	Ursus_maritimus
ENSRNOG00000017724	Sf3b3	100	83.648	ENSVPAG00000003202	SF3B3	100	83.648	Vicugna_pacos
ENSRNOG00000017724	Sf3b3	100	99.753	ENSVVUG00000017922	SF3B3	100	99.753	Vulpes_vulpes
ENSRNOG00000017724	Sf3b3	100	96.631	ENSXETG00000032869	SF3B3	100	96.631	Xenopus_tropicalis
ENSRNOG00000017724	Sf3b3	77	94.055	ENSXCOG00000013628	sf3b3	97	94.055	Xiphophorus_couchianus
ENSRNOG00000017724	Sf3b3	100	92.605	ENSXMAG00000006334	sf3b3	99	93.699	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005689	U12-type spliceosomal complex	-	IEA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0042177	negative regulation of protein catabolic process	-	IEA	Process
GO:0042177	negative regulation of protein catabolic process	-	ISO	Process
GO:0044877	protein-containing complex binding	-	IEA	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	IEA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component