EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000017836 (Gene tree)
Gene ID: 100360664
Gene Symbol: Rrp36
Alias: LOC100360664
Full Name: ribosomal RNA processing 36
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 6570 bases
Position: chr9:16619040-16625609
Accession: 2321693
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000024010	RRP36	PF06102.12	2.3e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000024010	-	732	XM_002729998	ENSRNOP00000024010	244 (aa)	XP_002730044	D3ZDJ5

Gene Model

Click here to download ENSRNOG00000017836's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000017836's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000017836	Rrp36	87	88.372	ENSG00000124541	RRP36	83	95.833	Homo_sapiens
ENSRNOG00000017836	Rrp36	85	53.846	ENSAPOG00000022015	rrp36	75	53.846	Acanthochromis_polyacanthus
ENSRNOG00000017836	Rrp36	90	52.252	ENSACIG00000020578	-	71	48.879	Amphilophus_citrinellus
ENSRNOG00000017836	Rrp36	86	54.762	ENSAOCG00000013439	rrp36	64	55.288	Amphiprion_ocellaris
ENSRNOG00000017836	Rrp36	86	54.762	ENSAPEG00000020996	rrp36	64	55.288	Amphiprion_percula
ENSRNOG00000017836	Rrp36	86	54.245	ENSATEG00000016946	rrp36	61	54.245	Anabas_testudineus
ENSRNOG00000017836	Rrp36	87	86.977	ENSANAG00000021773	RRP36	84	86.977	Aotus_nancymaae
ENSRNOG00000017836	Rrp36	86	45.455	ENSACLG00000008408	rrp36	88	45.455	Astatotilapia_calliptera
ENSRNOG00000017836	Rrp36	86	44.498	ENSACLG00000013982	RRP36	85	44.498	Astatotilapia_calliptera
ENSRNOG00000017836	Rrp36	100	79.352	ENSBTAG00000053873	RRP36	100	79.352	Bos_taurus
ENSRNOG00000017836	Rrp36	87	86.111	ENSCJAG00000004943	RRP36	84	86.111	Callithrix_jacchus
ENSRNOG00000017836	Rrp36	92	83.700	ENSCAFG00020011057	RRP36	94	85.845	Canis_lupus_dingo
ENSRNOG00000017836	Rrp36	93	60.000	ENSCHIG00000019781	-	99	60.000	Capra_hircus
ENSRNOG00000017836	Rrp36	93	77.489	ENSCHIG00000003210	-	99	77.489	Capra_hircus
ENSRNOG00000017836	Rrp36	89	85.845	ENSCHIG00000016354	-	87	85.845	Capra_hircus
ENSRNOG00000017836	Rrp36	98	76.680	ENSTSYG00000037176	RRP36	99	76.680	Carlito_syrichta
ENSRNOG00000017836	Rrp36	86	83.333	ENSCAPG00000010983	RRP36	91	83.333	Cavia_aperea
ENSRNOG00000017836	Rrp36	91	80.357	ENSCPOG00000025932	RRP36	99	80.357	Cavia_porcellus
ENSRNOG00000017836	Rrp36	87	87.442	ENSCCAG00000000048	RRP36	84	87.442	Cebus_capucinus
ENSRNOG00000017836	Rrp36	87	87.442	ENSCATG00000041903	RRP36	99	78.039	Cercocebus_atys
ENSRNOG00000017836	Rrp36	90	84.234	ENSCLAG00000013166	RRP36	99	84.234	Chinchilla_lanigera
ENSRNOG00000017836	Rrp36	93	81.743	ENSCSAG00000011553	RRP36	99	79.216	Chlorocebus_sabaeus
ENSRNOG00000017836	Rrp36	88	56.951	ENSCPBG00000003555	RRP36	60	56.951	Chrysemys_picta_bellii
ENSRNOG00000017836	Rrp36	87	37.156	ENSCING00000012193	-	85	37.156	Ciona_intestinalis
ENSRNOG00000017836	Rrp36	76	37.500	ENSCSAVG00000002672	-	84	37.500	Ciona_savignyi
ENSRNOG00000017836	Rrp36	87	88.372	ENSCANG00000035127	RRP36	85	88.372	Colobus_angolensis_palliatus
ENSRNOG00000017836	Rrp36	90	89.041	ENSCGRG00001021461	Rrp36	97	89.041	Cricetulus_griseus_chok1gshd
ENSRNOG00000017836	Rrp36	90	89.041	ENSCGRG00000006286	Rrp36	97	89.041	Cricetulus_griseus_crigri
ENSRNOG00000017836	Rrp36	89	54.378	ENSCSEG00000001039	RRP36	66	54.378	Cynoglossus_semilaevis
ENSRNOG00000017836	Rrp36	86	48.585	ENSCVAG00000017798	rrp36	93	48.585	Cyprinodon_variegatus
ENSRNOG00000017836	Rrp36	86	51.185	ENSDARG00000032516	rrp36	81	44.656	Danio_rerio
ENSRNOG00000017836	Rrp36	92	80.357	ENSDORG00000012186	Rrp36	97	80.357	Dipodomys_ordii
ENSRNOG00000017836	Rrp36	86	35.135	FBgn0038235	CG8461	89	35.135	Drosophila_melanogaster
ENSRNOG00000017836	Rrp36	92	84.141	ENSEASG00005003169	RRP36	99	84.141	Equus_asinus_asinus
ENSRNOG00000017836	Rrp36	92	83.700	ENSECAG00000040238	RRP36	99	83.700	Equus_caballus
ENSRNOG00000017836	Rrp36	96	60.656	ENSEEUG00000010515	RRP36	98	60.656	Erinaceus_europaeus
ENSRNOG00000017836	Rrp36	88	52.093	ENSELUG00000016840	rrp36	68	47.951	Esox_lucius
ENSRNOG00000017836	Rrp36	100	77.689	ENSFCAG00000043818	RRP36	100	77.689	Felis_catus
ENSRNOG00000017836	Rrp36	86	84.579	ENSFDAG00000010380	RRP36	99	84.579	Fukomys_damarensis
ENSRNOG00000017836	Rrp36	76	49.462	ENSFHEG00000000761	rrp36	93	49.462	Fundulus_heteroclitus
ENSRNOG00000017836	Rrp36	88	50.233	ENSGAFG00000017817	rrp36	67	46.862	Gambusia_affinis
ENSRNOG00000017836	Rrp36	86	51.174	ENSGACG00000019603	RRP36	65	51.174	Gasterosteus_aculeatus
ENSRNOG00000017836	Rrp36	98	79.681	ENSGGOG00000037384	RRP36	99	79.681	Gorilla_gorilla
ENSRNOG00000017836	Rrp36	85	50.962	ENSHBUG00000008974	RRP36	64	50.962	Haplochromis_burtoni
ENSRNOG00000017836	Rrp36	88	83.410	ENSHGLG00000018082	RRP36	85	83.410	Heterocephalus_glaber_female
ENSRNOG00000017836	Rrp36	88	83.410	ENSHGLG00100019303	RRP36	85	83.410	Heterocephalus_glaber_male
ENSRNOG00000017836	Rrp36	86	36.792	ENSHCOG00000010303	rrp36	81	38.785	Hippocampus_comes
ENSRNOG00000017836	Rrp36	86	48.804	ENSIPUG00000016548	rrp36	70	48.804	Ictalurus_punctatus
ENSRNOG00000017836	Rrp36	91	83.186	ENSSTOG00000009511	RRP36	96	83.186	Ictidomys_tridecemlineatus
ENSRNOG00000017836	Rrp36	91	84.615	ENSJJAG00000023363	Rrp36	99	84.615	Jaculus_jaculus
ENSRNOG00000017836	Rrp36	85	52.404	ENSKMAG00000006968	rrp36	75	45.385	Kryptolebias_marmoratus
ENSRNOG00000017836	Rrp36	91	45.098	ENSLBEG00000017728	-	65	46.058	Labrus_bergylta
ENSRNOG00000017836	Rrp36	85	55.769	ENSLACG00000001888	rrp36	65	55.769	Latimeria_chalumnae
ENSRNOG00000017836	Rrp36	86	54.286	ENSLOCG00000015862	RRP36	60	54.286	Lepisosteus_oculatus
ENSRNOG00000017836	Rrp36	87	81.860	ENSLAFG00000032704	RRP36	100	81.860	Loxodonta_africana
ENSRNOG00000017836	Rrp36	87	88.372	ENSMFAG00000003547	RRP36	99	78.431	Macaca_fascicularis
ENSRNOG00000017836	Rrp36	87	87.907	ENSMNEG00000044747	RRP36	99	78.039	Macaca_nemestrina
ENSRNOG00000017836	Rrp36	87	87.907	ENSMLEG00000034272	RRP36	99	78.039	Mandrillus_leucophaeus
ENSRNOG00000017836	Rrp36	86	54.717	ENSMAMG00000019157	-	58	54.717	Mastacembelus_armatus
ENSRNOG00000017836	Rrp36	85	50.962	ENSMZEG00005015204	RRP36	64	50.962	Maylandia_zebra
ENSRNOG00000017836	Rrp36	90	86.758	ENSMAUG00000003648	Rrp36	96	86.758	Mesocricetus_auratus
ENSRNOG00000017836	Rrp36	98	75.697	ENSMICG00000045230	RRP36	99	75.697	Microcebus_murinus
ENSRNOG00000017836	Rrp36	97	82.203	ENSMOCG00000002009	Rrp36	98	81.857	Microtus_ochrogaster
ENSRNOG00000017836	Rrp36	86	50.237	ENSMMOG00000018637	-	63	50.237	Mola_mola
ENSRNOG00000017836	Rrp36	56	58.571	ENSMODG00000029304	-	80	59.236	Monodelphis_domestica
ENSRNOG00000017836	Rrp36	90	49.776	ENSMALG00000008142	-	75	47.257	Monopterus_albus
ENSRNOG00000017836	Rrp36	100	88.525	MGP_CAROLIEiJ_G0021680	Rrp36	100	88.525	Mus_caroli
ENSRNOG00000017836	Rrp36	100	87.295	ENSMUSG00000023971	Rrp36	99	89.732	Mus_musculus
ENSRNOG00000017836	Rrp36	92	91.556	MGP_PahariEiJ_G0020671	Rrp36	99	91.556	Mus_pahari
ENSRNOG00000017836	Rrp36	100	87.705	MGP_SPRETEiJ_G0022592	Rrp36	100	87.705	Mus_spretus
ENSRNOG00000017836	Rrp36	51	75.969	ENSNGAG00000021177	-	90	75.969	Nannospalax_galili
ENSRNOG00000017836	Rrp36	87	88.837	ENSNLEG00000033289	RRP36	100	88.837	Nomascus_leucogenys
ENSRNOG00000017836	Rrp36	68	66.061	ENSMEUG00000007149	-	99	66.061	Notamacropus_eugenii
ENSRNOG00000017836	Rrp36	80	83.756	ENSOPRG00000002274	RRP36	80	83.756	Ochotona_princeps
ENSRNOG00000017836	Rrp36	91	77.876	ENSODEG00000015915	RRP36	99	77.876	Octodon_degus
ENSRNOG00000017836	Rrp36	85	51.923	ENSONIG00000015983	rrp36	66	51.923	Oreochromis_niloticus
ENSRNOG00000017836	Rrp36	85	52.657	ENSORLG00000029500	rrp36	66	52.000	Oryzias_latipes
ENSRNOG00000017836	Rrp36	85	53.846	ENSORLG00020017452	-	66	52.000	Oryzias_latipes_hni
ENSRNOG00000017836	Rrp36	85	53.623	ENSORLG00015016898	rrp36	70	49.378	Oryzias_latipes_hsok
ENSRNOG00000017836	Rrp36	86	53.110	ENSOMEG00000008623	RRP36	62	53.623	Oryzias_melastigma
ENSRNOG00000017836	Rrp36	87	82.326	ENSOGAG00000012699	RRP36	93	82.326	Otolemur_garnettii
ENSRNOG00000017836	Rrp36	91	72.124	ENSPPAG00000042831	-	90	73.009	Pan_paniscus
ENSRNOG00000017836	Rrp36	100	79.283	ENSPPRG00000014610	RRP36	100	79.283	Panthera_pardus
ENSRNOG00000017836	Rrp36	100	79.283	ENSPTIG00000010853	RRP36	100	79.283	Panthera_tigris_altaica
ENSRNOG00000017836	Rrp36	87	88.837	ENSPTRG00000018184	RRP36	83	88.837	Pan_troglodytes
ENSRNOG00000017836	Rrp36	87	88.372	ENSPANG00000025140	RRP36	99	78.431	Papio_anubis
ENSRNOG00000017836	Rrp36	87	54.245	ENSPKIG00000004303	rrp36	62	54.245	Paramormyrops_kingsleyae
ENSRNOG00000017836	Rrp36	86	47.642	ENSPMGG00000016870	rrp36	72	46.522	Periophthalmus_magnuspinnatus
ENSRNOG00000017836	Rrp36	91	86.996	ENSPEMG00000007015	Rrp36	99	86.996	Peromyscus_maniculatus_bairdii
ENSRNOG00000017836	Rrp36	90	70.982	ENSPCIG00000009179	RRP36	90	70.982	Phascolarctos_cinereus
ENSRNOG00000017836	Rrp36	88	50.000	ENSPFOG00000011959	rrp36	55	50.467	Poecilia_formosa
ENSRNOG00000017836	Rrp36	88	50.000	ENSPLAG00000023901	rrp36	61	50.000	Poecilia_latipinna
ENSRNOG00000017836	Rrp36	88	50.467	ENSPMEG00000024099	rrp36	60	50.467	Poecilia_mexicana
ENSRNOG00000017836	Rrp36	88	50.935	ENSPREG00000022787	rrp36	61	50.935	Poecilia_reticulata
ENSRNOG00000017836	Rrp36	87	88.372	ENSPPYG00000016628	RRP36	83	88.372	Pongo_abelii
ENSRNOG00000017836	Rrp36	95	75.720	ENSPCOG00000018401	RRP36	97	75.720	Propithecus_coquereli
ENSRNOG00000017836	Rrp36	95	80.932	ENSPVAG00000008714	RRP36	96	80.932	Pteropus_vampyrus
ENSRNOG00000017836	Rrp36	85	50.962	ENSPNYG00000018030	RRP36	64	50.962	Pundamilia_nyererei
ENSRNOG00000017836	Rrp36	85	52.657	ENSPNAG00000027207	rrp36	58	52.657	Pygocentrus_nattereri
ENSRNOG00000017836	Rrp36	98	78.039	ENSRBIG00000040019	RRP36	99	78.039	Rhinopithecus_bieti
ENSRNOG00000017836	Rrp36	98	77.647	ENSRROG00000040721	RRP36	99	77.647	Rhinopithecus_roxellana
ENSRNOG00000017836	Rrp36	66	31.792	YOR287C	-	56	31.792	Saccharomyces_cerevisiae
ENSRNOG00000017836	Rrp36	87	85.116	ENSSBOG00000030228	RRP36	86	85.116	Saimiri_boliviensis_boliviensis
ENSRNOG00000017836	Rrp36	93	49.339	ENSSFOG00015023058	rrp36	65	50.463	Scleropages_formosus
ENSRNOG00000017836	Rrp36	91	54.425	ENSSMAG00000020911	-	59	55.814	Scophthalmus_maximus
ENSRNOG00000017836	Rrp36	86	54.245	ENSSDUG00000018924	rrp36	58	54.245	Seriola_dumerili
ENSRNOG00000017836	Rrp36	86	52.857	ENSSLDG00000019741	RRP36	96	54.854	Seriola_lalandi_dorsalis
ENSRNOG00000017836	Rrp36	87	81.690	ENSSARG00000000873	RRP36	99	81.690	Sorex_araneus
ENSRNOG00000017836	Rrp36	88	59.722	ENSSPUG00000000213	RRP36	60	59.722	Sphenodon_punctatus
ENSRNOG00000017836	Rrp36	85	54.502	ENSSPAG00000017154	rrp36	79	48.673	Stegastes_partitus
ENSRNOG00000017836	Rrp36	95	83.475	ENSSSCG00000001656	RRP36	94	83.475	Sus_scrofa
ENSRNOG00000017836	Rrp36	90	60.268	ENSSSCG00000037862	-	99	60.268	Sus_scrofa
ENSRNOG00000017836	Rrp36	86	47.393	ENSTRUG00000021893	rrp36	64	47.393	Takifugu_rubripes
ENSRNOG00000017836	Rrp36	88	47.907	ENSTNIG00000004741	rrp36	85	46.445	Tetraodon_nigroviridis
ENSRNOG00000017836	Rrp36	87	75.349	ENSTBEG00000012326	RRP36	100	75.349	Tupaia_belangeri
ENSRNOG00000017836	Rrp36	87	84.651	ENSTTRG00000007001	RRP36	96	79.412	Tursiops_truncatus
ENSRNOG00000017836	Rrp36	100	79.352	ENSUAMG00000015865	RRP36	100	79.352	Ursus_americanus
ENSRNOG00000017836	Rrp36	67	93.252	ENSUMAG00000008726	RRP36	100	93.252	Ursus_maritimus
ENSRNOG00000017836	Rrp36	87	86.977	ENSVPAG00000008904	RRP36	100	86.977	Vicugna_pacos
ENSRNOG00000017836	Rrp36	92	83.700	ENSVVUG00000027816	RRP36	94	85.845	Vulpes_vulpes
ENSRNOG00000017836	Rrp36	86	50.237	ENSXCOG00000011238	rrp36	90	46.667	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000469	cleavage involved in rRNA processing	-	IEA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0042274	ribosomal small subunit biogenesis	-	ISO	Process