EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000018067 (Gene tree)
Gene ID
64301
Gene Symbol
Smn1
Alias
Smn
Full Name
survival of motor neuron 1%2C telomeric
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
11048 bases
Position
chr2:30360100-30371147
Accession
620755
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000024456TUDORPF00567.240.0002511
ENSRNOP00000024456SMNPF06003.124.5e-10711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000076746-686--- (aa)--
ENSRNOT00000024456-1226-ENSRNOP00000024456288 (aa)-Q6P684
Gene Model
Click here to download ENSRNOG00000018067's gene model file
Pathways
Pathway IDPathway NameSource
rno03013RNA transportKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018067's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000018067Smn19681.071ENSG00000205571SMN29981.319Homo_sapiens
ENSRNOG00000018067Smn19681.071ENSG00000172062SMN19981.319Homo_sapiens
ENSRNOG00000018067Smn19253.506ENSAPOG00000011324smn19453.091Acanthochromis_polyacanthus
ENSRNOG00000018067Smn19781.139ENSAMEG00000003316-9680.412Ailuropoda_melanoleuca
ENSRNOG00000018067Smn15454.777ENSACIG00000007598smn18957.143Amphilophus_citrinellus
ENSRNOG00000018067Smn18950.775ENSACIG00000019772-9750.566Amphilophus_citrinellus
ENSRNOG00000018067Smn19251.111ENSAOCG00000024444smn19453.091Amphiprion_ocellaris
ENSRNOG00000018067Smn19253.506ENSAPEG00000016504smn19453.455Amphiprion_percula
ENSRNOG00000018067Smn18952.612ENSATEG00000002182smn17953.817Anabas_testudineus
ENSRNOG00000018067Smn16853.807ENSAPLG00000010912-9753.299Anas_platyrhynchos
ENSRNOG00000018067Smn110053.741ENSACAG00000010017-9953.767Anolis_carolinensis
ENSRNOG00000018067Smn19978.305ENSANAG00000032133-9978.305Aotus_nancymaae
ENSRNOG00000018067Smn19348.014ENSACLG00000007308smn18851.866Astatotilapia_calliptera
ENSRNOG00000018067Smn19775.801ENSBTAG00000005743SMN210074.828Bos_taurus
ENSRNOG00000018067Smn18930.769WBGene00004887smn-19530.418Caenorhabditis_elegans
ENSRNOG00000018067Smn19679.004ENSCJAG00000016290-9977.891Callithrix_jacchus
ENSRNOG00000018067Smn110080.756ENSCAFG00000007812SMN10080.756Canis_familiaris
ENSRNOG00000018067Smn19980.969ENSCAFG00020019229-9380.969Canis_lupus_dingo
ENSRNOG00000018067Smn19776.678ENSCHIG00000015559-10075.168Capra_hircus
ENSRNOG00000018067Smn19979.931ENSTSYG00000012058-9979.931Carlito_syrichta
ENSRNOG00000018067Smn17566.514ENSCAPG00000011021-9665.753Cavia_aperea
ENSRNOG00000018067Smn19976.531ENSCPOG00000012328-9975.510Cavia_porcellus
ENSRNOG00000018067Smn110076.949ENSCPOG00000036973-10075.932Cavia_porcellus
ENSRNOG00000018067Smn19679.928ENSCCAG00000018127-9978.767Cebus_capucinus
ENSRNOG00000018067Smn19681.786ENSCATG00000037002-9980.935Cercocebus_atys
ENSRNOG00000018067Smn110074.916ENSCLAG00000000284-10074.916Chinchilla_lanigera
ENSRNOG00000018067Smn19682.918ENSCSAG00000015688-9981.633Chlorocebus_sabaeus
ENSRNOG00000018067Smn18667.857ENSCHOG00000007346-6775.000Choloepus_hoffmanni
ENSRNOG00000018067Smn19857.931ENSCPBG00000010968-9956.667Chrysemys_picta_bellii
ENSRNOG00000018067Smn19682.500ENSCANG00000038242-9983.516Colobus_angolensis_palliatus
ENSRNOG00000018067Smn19575.357ENSCANG00000033324-9575.357Colobus_angolensis_palliatus
ENSRNOG00000018067Smn110093.403ENSCGRG00001017959-10093.403Cricetulus_griseus_chok1gshd
ENSRNOG00000018067Smn110071.528ENSCGRG00001016998-10072.222Cricetulus_griseus_chok1gshd
ENSRNOG00000018067Smn110093.403ENSCGRG00000007698Smn110093.403Cricetulus_griseus_crigri
ENSRNOG00000018067Smn19349.477ENSCSEG00000015227smn19749.110Cynoglossus_semilaevis
ENSRNOG00000018067Smn19352.364ENSCVAG00000007498smn19553.430Cyprinodon_variegatus
ENSRNOG00000018067Smn19252.381ENSDARG00000018494smn19452.574Danio_rerio
ENSRNOG00000018067Smn18375.309ENSDNOG00000007283-10075.309Dasypus_novemcinctus
ENSRNOG00000018067Smn17865.333ENSDNOG00000045949-9064.762Dasypus_novemcinctus
ENSRNOG00000018067Smn110074.490ENSDORG00000007082Smn19974.490Dipodomys_ordii
ENSRNOG00000018067Smn17167.961ENSETEG00000001406-9367.539Echinops_telfairi
ENSRNOG00000018067Smn19336.120ENSEBUG00000011902smn19537.847Eptatretus_burgeri
ENSRNOG00000018067Smn19473.358ENSEASG00005018000-9773.358Equus_asinus_asinus
ENSRNOG00000018067Smn110080.822ENSECAG00000015215-10080.822Equus_caballus
ENSRNOG00000018067Smn18674.104ENSEEUG00000015777-10074.104Erinaceus_europaeus
ENSRNOG00000018067Smn19253.650ENSELUG00000018067smn19451.661Esox_lucius
ENSRNOG00000018067Smn110080.412ENSFCAG00000028292SMN10080.412Felis_catus
ENSRNOG00000018067Smn19059.924ENSFALG00000012320-9157.854Ficedula_albicollis
ENSRNOG00000018067Smn110074.916ENSFDAG00000017683-10074.916Fukomys_damarensis
ENSRNOG00000018067Smn16153.371ENSFHEG00000018508smn19750.542Fundulus_heteroclitus
ENSRNOG00000018067Smn19846.341ENSGMOG00000017279smn19945.296Gadus_morhua
ENSRNOG00000018067Smn19259.480ENSGALG00000002430SMN9558.364Gallus_gallus
ENSRNOG00000018067Smn19351.636ENSGAFG00000009501smn19551.812Gambusia_affinis
ENSRNOG00000018067Smn19248.188ENSGACG00000010584smn19150.182Gasterosteus_aculeatus
ENSRNOG00000018067Smn16238.462ENSGAGG00000013639-9037.379Gopherus_agassizii
ENSRNOG00000018067Smn19858.763ENSGAGG00000011374-9957.388Gopherus_agassizii
ENSRNOG00000018067Smn16279.006ENSGGOG00000026704-9177.320Gorilla_gorilla
ENSRNOG00000018067Smn19469.343ENSGGOG00000003872-10068.953Gorilla_gorilla
ENSRNOG00000018067Smn19250.187ENSHBUG00000013987smn19453.759Haplochromis_burtoni
ENSRNOG00000018067Smn110074.490ENSHGLG00000001905-10074.490Heterocephalus_glaber_female
ENSRNOG00000018067Smn19976.976ENSHGLG00000001018-9876.976Heterocephalus_glaber_female
ENSRNOG00000018067Smn19976.976ENSHGLG00100011252-9876.976Heterocephalus_glaber_male
ENSRNOG00000018067Smn19575.089ENSHGLG00100018676-10075.089Heterocephalus_glaber_male
ENSRNOG00000018067Smn18949.438ENSHCOG00000017136smn18749.612Hippocampus_comes
ENSRNOG00000018067Smn19251.698ENSIPUG00000012580smn18349.817Ictalurus_punctatus
ENSRNOG00000018067Smn19184.030ENSSTOG00000012288-10082.609Ictidomys_tridecemlineatus
ENSRNOG00000018067Smn15961.272ENSJJAG00000014853-8961.494Jaculus_jaculus
ENSRNOG00000018067Smn19353.091ENSKMAG00000007239smn19752.434Kryptolebias_marmoratus
ENSRNOG00000018067Smn19253.137ENSLBEG00000022550smn19454.815Labrus_bergylta
ENSRNOG00000018067Smn19236.331ENSLACG00000009808-9535.959Latimeria_chalumnae
ENSRNOG00000018067Smn19452.899ENSLOCG00000011339smn19751.986Lepisosteus_oculatus
ENSRNOG00000018067Smn110079.322ENSLAFG00000003425-9679.322Loxodonta_africana
ENSRNOG00000018067Smn19683.630ENSMFAG00000031523SMN19983.516Macaca_fascicularis
ENSRNOG00000018067Smn19677.143ENSMFAG00000008812-9976.109Macaca_fascicularis
ENSRNOG00000018067Smn19683.630ENSMMUG00000020214SMN19983.516Macaca_mulatta
ENSRNOG00000018067Smn19676.429ENSMMUG00000030594-9975.427Macaca_mulatta
ENSRNOG00000018067Smn19683.274ENSMNEG00000035094-9983.516Macaca_nemestrina
ENSRNOG00000018067Smn17668.468ENSMNEG00000036423-8668.468Macaca_nemestrina
ENSRNOG00000018067Smn19682.500ENSMLEG00000041902-9981.655Mandrillus_leucophaeus
ENSRNOG00000018067Smn19251.111ENSMAMG00000011034smn19450.725Mastacembelus_armatus
ENSRNOG00000018067Smn19250.187ENSMZEG00005013634smn19451.812Maylandia_zebra
ENSRNOG00000018067Smn16855.612ENSMGAG00000008889-9554.082Meleagris_gallopavo
ENSRNOG00000018067Smn110092.708ENSMAUG00000010262Smn110092.708Mesocricetus_auratus
ENSRNOG00000018067Smn19668.440ENSMICG00000034708-8977.586Microcebus_murinus
ENSRNOG00000018067Smn110090.972ENSMOCG00000017833Smn110090.972Microtus_ochrogaster
ENSRNOG00000018067Smn19246.415ENSMMOG00000005504smn19345.693Mola_mola
ENSRNOG00000018067Smn19864.460ENSMODG00000001436-9565.125Monodelphis_domestica
ENSRNOG00000018067Smn19251.481ENSMALG00000008025smn19451.087Monopterus_albus
ENSRNOG00000018067Smn110094.464MGP_CAROLIEiJ_G0018836Smn110094.810Mus_caroli
ENSRNOG00000018067Smn110094.464ENSMUSG00000021645Smn110094.810Mus_musculus
ENSRNOG00000018067Smn110090.972MGP_PahariEiJ_G0015911Smn110092.361Mus_pahari
ENSRNOG00000018067Smn110093.772MGP_SPRETEiJ_G0019718Smn110094.118Mus_spretus
ENSRNOG00000018067Smn19482.246ENSMPUG00000014470-9882.246Mustela_putorius_furo
ENSRNOG00000018067Smn19779.931ENSMLUG00000010603-9679.333Myotis_lucifugus
ENSRNOG00000018067Smn110084.828ENSNGAG00000019833Smn110084.828Nannospalax_galili
ENSRNOG00000018067Smn19249.638ENSNBRG00000023000smn19453.455Neolamprologus_brichardi
ENSRNOG00000018067Smn19979.522ENSNLEG00000004454-9981.319Nomascus_leucogenys
ENSRNOG00000018067Smn17761.674ENSMEUG00000011393-9961.674Notamacropus_eugenii
ENSRNOG00000018067Smn18675.099ENSOPRG00000002015-10076.285Ochotona_princeps
ENSRNOG00000018067Smn19477.818ENSODEG00000015976-9777.818Octodon_degus
ENSRNOG00000018067Smn19349.281ENSONIG00000011799smn19551.971Oreochromis_niloticus
ENSRNOG00000018067Smn19362.868ENSOANG00000001626-9563.971Ornithorhynchus_anatinus
ENSRNOG00000018067Smn19971.088ENSOCUG00000025183-9971.088Oryctolagus_cuniculus
ENSRNOG00000018067Smn19973.559ENSOCUG00000026649-9975.932Oryctolagus_cuniculus
ENSRNOG00000018067Smn110077.740ENSOCUG00000017097-9977.740Oryctolagus_cuniculus
ENSRNOG00000018067Smn19348.727ENSORLG00000010552smn19552.574Oryzias_latipes
ENSRNOG00000018067Smn19351.866ENSORLG00020007936smn19551.866Oryzias_latipes_hni
ENSRNOG00000018067Smn19349.446ENSORLG00015022425smn19553.309Oryzias_latipes_hsok
ENSRNOG00000018067Smn19349.071ENSOMEG00000007824smn19553.676Oryzias_melastigma
ENSRNOG00000018067Smn19172.222ENSOGAG00000031414-10070.242Otolemur_garnettii
ENSRNOG00000018067Smn19575.000ENSOARG00000005425-10074.638Ovis_aries
ENSRNOG00000018067Smn19680.714ENSPPAG00000036640-9981.319Pan_paniscus
ENSRNOG00000018067Smn110080.756ENSPPRG00000005575-10080.756Panthera_pardus
ENSRNOG00000018067Smn110080.822ENSPTIG00000007745-10080.822Panthera_tigris_altaica
ENSRNOG00000018067Smn19679.859ENSPTRG00000016955-9981.319Pan_troglodytes
ENSRNOG00000018067Smn19982.313ENSPANG00000013601-9983.516Papio_anubis
ENSRNOG00000018067Smn19476.727ENSPANG00000000253-9876.042Papio_anubis
ENSRNOG00000018067Smn19448.727ENSPKIG00000011096smn19750.730Paramormyrops_kingsleyae
ENSRNOG00000018067Smn19355.634ENSPSIG00000014787-9054.225Pelodiscus_sinensis
ENSRNOG00000018067Smn19544.483ENSPMGG00000012285smn19746.099Periophthalmus_magnuspinnatus
ENSRNOG00000018067Smn19642.756ENSPMAG00000005004smn19641.958Petromyzon_marinus
ENSRNOG00000018067Smn19666.904ENSPCIG00000025764-9766.904Phascolarctos_cinereus
ENSRNOG00000018067Smn19353.091ENSPFOG00000007786smn19552.747Poecilia_formosa
ENSRNOG00000018067Smn19353.455ENSPLAG00000012071smn19553.114Poecilia_latipinna
ENSRNOG00000018067Smn19353.091ENSPMEG00000017085smn19552.747Poecilia_mexicana
ENSRNOG00000018067Smn19353.091ENSPREG00000005824smn19552.899Poecilia_reticulata
ENSRNOG00000018067Smn19279.478ENSPPYG00000015533-9779.478Pongo_abelii
ENSRNOG00000018067Smn18653.414ENSPPYG00000019189-9953.414Pongo_abelii
ENSRNOG00000018067Smn19275.735ENSPCAG00000004187-10075.092Procavia_capensis
ENSRNOG00000018067Smn16875.490ENSPCOG00000022307-10063.910Propithecus_coquereli
ENSRNOG00000018067Smn19782.562ENSPVAG00000005977-10080.952Pteropus_vampyrus
ENSRNOG00000018067Smn19249.638ENSPNYG00000014148smn19453.455Pundamilia_nyererei
ENSRNOG00000018067Smn19450.000ENSPNAG00000014007smn18550.182Pygocentrus_nattereri
ENSRNOG00000018067Smn19567.742ENSRBIG00000036775-9268.750Rhinopithecus_bieti
ENSRNOG00000018067Smn19682.918ENSRBIG00000037052-9983.516Rhinopithecus_bieti
ENSRNOG00000018067Smn19966.894ENSRROG00000031088-9767.832Rhinopithecus_roxellana
ENSRNOG00000018067Smn19682.918ENSRROG00000039399-9983.516Rhinopithecus_roxellana
ENSRNOG00000018067Smn19677.778ENSSBOG00000011665-9977.740Saimiri_boliviensis_boliviensis
ENSRNOG00000018067Smn18374.000ENSSBOG00000020112-8774.400Saimiri_boliviensis_boliviensis
ENSRNOG00000018067Smn19866.202ENSSHAG00000001499-9864.945Sarcophilus_harrisii
ENSRNOG00000018067Smn19550.890ENSSFOG00015015507smn19651.071Scleropages_formosus
ENSRNOG00000018067Smn19250.730ENSSMAG00000007922smn19451.449Scophthalmus_maximus
ENSRNOG00000018067Smn19251.292ENSSDUG00000018533smn19451.812Seriola_dumerili
ENSRNOG00000018067Smn19251.661ENSSLDG00000021135smn19452.174Seriola_lalandi_dorsalis
ENSRNOG00000018067Smn19560.072ENSSPUG00000000373-9560.145Sphenodon_punctatus
ENSRNOG00000018067Smn19252.222ENSSPAG00000004345smn19452.000Stegastes_partitus
ENSRNOG00000018067Smn19760.357ENSSSCG00000029127-9762.153Sus_scrofa
ENSRNOG00000018067Smn17452.113ENSSSCG00000033865-9253.589Sus_scrofa
ENSRNOG00000018067Smn19779.359ENSSSCG00000016970-10080.272Sus_scrofa
ENSRNOG00000018067Smn19457.914ENSTGUG00000001548-10054.196Taeniopygia_guttata
ENSRNOG00000018067Smn19345.788ENSTRUG00000000736smn9545.985Takifugu_rubripes
ENSRNOG00000018067Smn19348.929ENSTNIG00000009892smn19548.921Tetraodon_nigroviridis
ENSRNOG00000018067Smn16680.208ENSTBEG00000002399-9380.208Tupaia_belangeri
ENSRNOG00000018067Smn19777.224ENSTTRG00000005080-10076.351Tursiops_truncatus
ENSRNOG00000018067Smn16281.319ENSUAMG00000024947-7080.208Ursus_americanus
ENSRNOG00000018067Smn19781.851ENSUMAG00000007842-7481.100Ursus_maritimus
ENSRNOG00000018067Smn19171.970ENSVPAG00000009887-9971.014Vicugna_pacos
ENSRNOG00000018067Smn110080.756ENSVVUG00000006934-10080.756Vulpes_vulpes
ENSRNOG00000018067Smn19553.381ENSXETG00000018189smn29353.597Xenopus_tropicalis
ENSRNOG00000018067Smn19137.011ENSXETG00000004912-7962.295Xenopus_tropicalis
ENSRNOG00000018067Smn19452.347ENSXMAG00000001521smn19651.246Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000245spliceosomal complex assembly-ISOProcess
GO:0000387spliceosomal snRNP assembly-ISOProcess
GO:0000387spliceosomal snRNP assembly-ISSProcess
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005654nucleoplasm-ISSComponent
GO:0005730nucleolus14597228.IDAComponent
GO:0005737cytoplasm14597228.IDAComponent
GO:0005737cytoplasm-IEAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005829cytosol-ISSComponent
GO:0006353DNA-templated transcription, termination-ISOProcess
GO:0006353DNA-templated transcription, termination-ISSProcess
GO:0006397mRNA processing-IEAProcess
GO:0007019microtubule depolymerization-IEAProcess
GO:0007019microtubule depolymerization-ISOProcess
GO:0007268chemical synaptic transmission12030329.IEPProcess
GO:0007399nervous system development-IEAProcess
GO:0007409axonogenesis-IEAProcess
GO:0007409axonogenesis-ISOProcess
GO:0010975regulation of neuron projection development-IEAProcess
GO:0010975regulation of neuron projection development-ISOProcess
GO:0015030Cajal body-IEAComponent
GO:0015030Cajal body-ISOComponent
GO:0015030Cajal body-ISSComponent
GO:0017134fibroblast growth factor binding12397076.IPIFunction
GO:0030018Z disc-IEAComponent
GO:0032797SMN complex-ISOComponent
GO:0032797SMN complex-ISSComponent
GO:0033120positive regulation of RNA splicing-IEAProcess
GO:0033120positive regulation of RNA splicing-ISOProcess
GO:0034719SMN-Sm protein complex-ISOComponent
GO:0034719SMN-Sm protein complex-ISSComponent
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0036464cytoplasmic ribonucleoprotein granule-ISSComponent
GO:0042802identical protein binding-ISOFunction
GO:0043005neuron projection-ISOComponent
GO:0043005neuron projection-ISSComponent
GO:0043204perikaryon-ISOComponent
GO:0043204perikaryon-ISSComponent
GO:0097504Gemini of coiled bodies12397076.IDAComponent
GO:0097504Gemini of coiled bodies-ISOComponent

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