EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018149 (Gene tree)
Gene ID: 307766
Gene Symbol: Smarca5
Alias: LOC307766
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 32752 bases
Position: chr19:30936703-30969454
Accession: 1308832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000024568	ResIII	PF04851.15	7.4e-11	1	1
ENSRNOP00000024568	DEAD	PF00270.29	3.8e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000024568	-	4168	XM_006255401	ENSRNOP00000024568	995 (aa)	-	F1LNL2

Gene Model

Click here to download ENSRNOG00000018149's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018149's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000018149	Smarca5	98	84.608	ENSRNOG00000003762	Smarca1	93	84.451
ENSRNOG00000018149	Smarca5	50	47.600	ENSRNOG00000047104	Hells	62	47.600
ENSRNOG00000018149	Smarca5	57	43.396	ENSRNOG00000017669	Chd1l	62	43.396
ENSRNOG00000018149	Smarca5	50	47.600	ENSRNOG00000047692	LOC100911660	63	47.600

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018149	Smarca5	100	99.196	ENSG00000153147	SMARCA5	95	99.196	Homo_sapiens
ENSRNOG00000018149	Smarca5	100	99.497	ENSAMEG00000009585	SMARCA5	95	99.497	Ailuropoda_melanoleuca
ENSRNOG00000018149	Smarca5	97	96.612	ENSAPLG00000009206	SMARCA5	100	96.612	Anas_platyrhynchos
ENSRNOG00000018149	Smarca5	99	96.479	ENSACAG00000003038	SMARCA5	96	96.479	Anolis_carolinensis
ENSRNOG00000018149	Smarca5	100	99.296	ENSANAG00000019345	SMARCA5	99	99.095	Aotus_nancymaae
ENSRNOG00000018149	Smarca5	100	99.397	ENSBTAG00000003399	SMARCA5	95	99.397	Bos_taurus
ENSRNOG00000018149	Smarca5	100	99.397	ENSCJAG00000002735	SMARCA5	95	99.397	Callithrix_jacchus
ENSRNOG00000018149	Smarca5	100	99.497	ENSCAFG00000007525	SMARCA5	95	99.497	Canis_familiaris
ENSRNOG00000018149	Smarca5	98	99.385	ENSCAFG00020025641	SMARCA5	94	99.385	Canis_lupus_dingo
ENSRNOG00000018149	Smarca5	100	99.397	ENSCHIG00000013730	-	95	99.397	Capra_hircus
ENSRNOG00000018149	Smarca5	100	97.588	ENSCHIG00000016375	-	96	97.588	Capra_hircus
ENSRNOG00000018149	Smarca5	99	99.295	ENSTSYG00000009954	SMARCA5	99	99.295	Carlito_syrichta
ENSRNOG00000018149	Smarca5	97	99.380	ENSCAPG00000013747	SMARCA5	95	99.380	Cavia_aperea
ENSRNOG00000018149	Smarca5	100	99.497	ENSCPOG00000002259	SMARCA5	95	99.497	Cavia_porcellus
ENSRNOG00000018149	Smarca5	100	99.397	ENSCCAG00000027215	SMARCA5	99	99.196	Cebus_capucinus
ENSRNOG00000018149	Smarca5	100	99.296	ENSCATG00000044917	SMARCA5	95	99.296	Cercocebus_atys
ENSRNOG00000018149	Smarca5	100	99.397	ENSCLAG00000006153	SMARCA5	100	99.597	Chinchilla_lanigera
ENSRNOG00000018149	Smarca5	97	99.381	ENSCSAG00000003448	SMARCA5	100	99.381	Chlorocebus_sabaeus
ENSRNOG00000018149	Smarca5	91	98.405	ENSCHOG00000011724	SMARCA5	86	98.405	Choloepus_hoffmanni
ENSRNOG00000018149	Smarca5	100	98.293	ENSCPBG00000027535	SMARCA5	96	98.293	Chrysemys_picta_bellii
ENSRNOG00000018149	Smarca5	100	99.296	ENSCANG00000041629	SMARCA5	95	99.296	Colobus_angolensis_palliatus
ENSRNOG00000018149	Smarca5	100	99.799	ENSCGRG00001012719	Smarca5	94	99.799	Cricetulus_griseus_chok1gshd
ENSRNOG00000018149	Smarca5	99	99.799	ENSCGRG00000001417	Smarca5	99	99.698	Cricetulus_griseus_crigri
ENSRNOG00000018149	Smarca5	100	96.583	ENSDNOG00000009158	SMARCA5	95	96.583	Dasypus_novemcinctus
ENSRNOG00000018149	Smarca5	95	90.823	ENSDORG00000003466	Smarca5	97	90.823	Dipodomys_ordii
ENSRNOG00000018149	Smarca5	97	85.537	ENSEBUG00000014773	SMARCA5	96	85.537	Eptatretus_burgeri
ENSRNOG00000018149	Smarca5	100	99.497	ENSEASG00005001866	SMARCA5	98	99.515	Equus_asinus_asinus
ENSRNOG00000018149	Smarca5	100	99.497	ENSECAG00000002676	SMARCA5	95	99.497	Equus_caballus
ENSRNOG00000018149	Smarca5	99	95.166	ENSEEUG00000013176	SMARCA5	100	95.166	Erinaceus_europaeus
ENSRNOG00000018149	Smarca5	97	89.175	ENSELUG00000014653	SMARCA5	99	89.175	Esox_lucius
ENSRNOG00000018149	Smarca5	100	99.497	ENSFCAG00000004544	SMARCA5	95	99.497	Felis_catus
ENSRNOG00000018149	Smarca5	97	97.216	ENSFALG00000004987	SMARCA5	100	97.216	Ficedula_albicollis
ENSRNOG00000018149	Smarca5	99	99.597	ENSFDAG00000021016	SMARCA5	100	99.597	Fukomys_damarensis
ENSRNOG00000018149	Smarca5	98	89.253	ENSGMOG00000007519	SMARCA5	94	89.253	Gadus_morhua
ENSRNOG00000018149	Smarca5	100	97.390	ENSGALG00000009913	SMARCA5	96	97.390	Gallus_gallus
ENSRNOG00000018149	Smarca5	99	89.516	ENSGACG00000017238	SMARCA5	95	90.583	Gasterosteus_aculeatus
ENSRNOG00000018149	Smarca5	100	98.394	ENSGAGG00000019882	SMARCA5	96	98.394	Gopherus_agassizii
ENSRNOG00000018149	Smarca5	100	99.196	ENSGGOG00000012595	SMARCA5	99	99.194	Gorilla_gorilla
ENSRNOG00000018149	Smarca5	99	89.839	ENSHGLG00000000317	-	95	89.839	Heterocephalus_glaber_female
ENSRNOG00000018149	Smarca5	99	99.497	ENSHGLG00000000816	-	94	99.497	Heterocephalus_glaber_female
ENSRNOG00000018149	Smarca5	99	99.496	ENSHGLG00100018421	-	100	99.496	Heterocephalus_glaber_male
ENSRNOG00000018149	Smarca5	100	99.598	ENSSTOG00000010683	SMARCA5	94	99.598	Ictidomys_tridecemlineatus
ENSRNOG00000018149	Smarca5	100	99.497	ENSJJAG00000014965	Smarca5	95	99.497	Jaculus_jaculus
ENSRNOG00000018149	Smarca5	99	95.181	ENSLACG00000007091	SMARCA5	97	95.358	Latimeria_chalumnae
ENSRNOG00000018149	Smarca5	99	92.081	ENSLOCG00000008966	SMARCA5	96	92.081	Lepisosteus_oculatus
ENSRNOG00000018149	Smarca5	100	99.497	ENSLAFG00000007795	SMARCA5	95	99.497	Loxodonta_africana
ENSRNOG00000018149	Smarca5	100	99.296	ENSMFAG00000043649	SMARCA5	95	99.296	Macaca_fascicularis
ENSRNOG00000018149	Smarca5	100	99.296	ENSMMUG00000000829	SMARCA5	97	99.262	Macaca_mulatta
ENSRNOG00000018149	Smarca5	100	99.296	ENSMNEG00000031916	SMARCA5	95	99.296	Macaca_nemestrina
ENSRNOG00000018149	Smarca5	100	99.296	ENSMLEG00000042393	SMARCA5	95	99.296	Mandrillus_leucophaeus
ENSRNOG00000018149	Smarca5	99	97.286	ENSMGAG00000003517	SMARCA5	99	97.286	Meleagris_gallopavo
ENSRNOG00000018149	Smarca5	99	99.799	ENSMAUG00000015902	Smarca5	98	99.799	Mesocricetus_auratus
ENSRNOG00000018149	Smarca5	100	99.296	ENSMICG00000003971	SMARCA5	99	97.698	Microcebus_murinus
ENSRNOG00000018149	Smarca5	100	99.497	ENSMOCG00000016986	-	95	99.497	Microtus_ochrogaster
ENSRNOG00000018149	Smarca5	100	98.894	ENSMODG00000000391	SMARCA5	95	98.894	Monodelphis_domestica
ENSRNOG00000018149	Smarca5	100	99.698	ENSMUSG00000031715	Smarca5	95	99.698	Mus_musculus
ENSRNOG00000018149	Smarca5	100	99.899	MGP_PahariEiJ_G0022862	Smarca5	95	99.899	Mus_pahari
ENSRNOG00000018149	Smarca5	100	99.598	ENSMLUG00000000468	SMARCA5	95	99.598	Myotis_lucifugus
ENSRNOG00000018149	Smarca5	100	99.899	ENSNGAG00000000441	Smarca5	95	99.899	Nannospalax_galili
ENSRNOG00000018149	Smarca5	100	99.296	ENSNLEG00000005383	SMARCA5	95	99.296	Nomascus_leucogenys
ENSRNOG00000018149	Smarca5	97	91.322	ENSMEUG00000001267	SMARCA5	100	91.322	Notamacropus_eugenii
ENSRNOG00000018149	Smarca5	90	98.429	ENSOPRG00000014427	SMARCA5	86	98.429	Ochotona_princeps
ENSRNOG00000018149	Smarca5	97	98.968	ENSOANG00000013921	SMARCA5	100	98.968	Ornithorhynchus_anatinus
ENSRNOG00000018149	Smarca5	97	99.794	ENSOCUG00000013042	SMARCA5	100	99.794	Oryctolagus_cuniculus
ENSRNOG00000018149	Smarca5	100	99.296	ENSOGAG00000009702	SMARCA5	95	99.296	Otolemur_garnettii
ENSRNOG00000018149	Smarca5	99	99.195	ENSOARG00000010589	SMARCA5	94	99.195	Ovis_aries
ENSRNOG00000018149	Smarca5	100	99.095	ENSPPAG00000028523	SMARCA5	99	99.094	Pan_paniscus
ENSRNOG00000018149	Smarca5	100	93.568	ENSPPRG00000004925	SMARCA5	94	94.472	Panthera_pardus
ENSRNOG00000018149	Smarca5	100	99.497	ENSPTIG00000020959	SMARCA5	96	99.497	Panthera_tigris_altaica
ENSRNOG00000018149	Smarca5	100	99.196	ENSPTRG00000016472	SMARCA5	99	99.194	Pan_troglodytes
ENSRNOG00000018149	Smarca5	100	99.296	ENSPANG00000001175	SMARCA5	95	99.296	Papio_anubis
ENSRNOG00000018149	Smarca5	99	89.347	ENSPKIG00000015699	SMARCA5	98	89.598	Paramormyrops_kingsleyae
ENSRNOG00000018149	Smarca5	100	89.379	ENSPKIG00000015885	SMARCA5	100	91.031	Paramormyrops_kingsleyae
ENSRNOG00000018149	Smarca5	100	95.984	ENSPSIG00000004177	SMARCA5	99	95.984	Pelodiscus_sinensis
ENSRNOG00000018149	Smarca5	97	89.712	ENSPMGG00000012316	SMARCA5	100	89.712	Periophthalmus_magnuspinnatus
ENSRNOG00000018149	Smarca5	99	99.698	ENSPEMG00000008060	Smarca5	98	99.698	Peromyscus_maniculatus_bairdii
ENSRNOG00000018149	Smarca5	64	86.895	ENSPMAG00000008026	SMARCA5	99	86.895	Petromyzon_marinus
ENSRNOG00000018149	Smarca5	99	71.154	ENSPMAG00000006011	SMARCA5	63	86.062	Petromyzon_marinus
ENSRNOG00000018149	Smarca5	100	98.894	ENSPCIG00000003926	SMARCA5	95	98.894	Phascolarctos_cinereus
ENSRNOG00000018149	Smarca5	100	99.296	ENSPPYG00000015091	SMARCA5	95	99.296	Pongo_abelii
ENSRNOG00000018149	Smarca5	84	95.500	ENSPCAG00000014230	SMARCA5	83	95.500	Procavia_capensis
ENSRNOG00000018149	Smarca5	100	96.382	ENSPCOG00000026744	SMARCA5	99	95.775	Propithecus_coquereli
ENSRNOG00000018149	Smarca5	100	99.397	ENSPVAG00000006482	SMARCA5	95	99.397	Pteropus_vampyrus
ENSRNOG00000018149	Smarca5	99	89.679	ENSPNAG00000027824	SMARCA5	97	90.145	Pygocentrus_nattereri
ENSRNOG00000018149	Smarca5	99	99.195	ENSRBIG00000044644	SMARCA5	94	99.195	Rhinopithecus_bieti
ENSRNOG00000018149	Smarca5	99	99.195	ENSRROG00000029591	SMARCA5	99	99.195	Rhinopithecus_roxellana
ENSRNOG00000018149	Smarca5	100	99.397	ENSSBOG00000036257	SMARCA5	95	99.397	Saimiri_boliviensis_boliviensis
ENSRNOG00000018149	Smarca5	99	98.892	ENSSHAG00000008464	SMARCA5	100	98.892	Sarcophilus_harrisii
ENSRNOG00000018149	Smarca5	99	90.050	ENSSFOG00015013252	SMARCA5	97	90.050	Scleropages_formosus
ENSRNOG00000018149	Smarca5	99	96.364	ENSSPUG00000007604	SMARCA5	99	96.181	Sphenodon_punctatus
ENSRNOG00000018149	Smarca5	100	99.497	ENSSSCG00000009047	SMARCA5	95	99.497	Sus_scrofa
ENSRNOG00000018149	Smarca5	100	96.687	ENSTGUG00000002408	SMARCA5	99	96.687	Taeniopygia_guttata
ENSRNOG00000018149	Smarca5	98	99.385	ENSUAMG00000023495	SMARCA5	93	99.385	Ursus_americanus
ENSRNOG00000018149	Smarca5	100	99.497	ENSUMAG00000015324	SMARCA5	97	99.497	Ursus_maritimus
ENSRNOG00000018149	Smarca5	100	99.196	ENSVPAG00000008982	SMARCA5	95	99.196	Vicugna_pacos
ENSRNOG00000018149	Smarca5	100	99.497	ENSVVUG00000017473	SMARCA5	95	99.497	Vulpes_vulpes
ENSRNOG00000018149	Smarca5	94	93.717	ENSXETG00000017566	smarca5	94	93.717	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000183	chromatin silencing at rDNA	-	ISO	Process
GO:0000793	condensed chromosome	-	ISO	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005677	chromatin silencing complex	-	ISO	Component
GO:0006333	chromatin assembly or disassembly	-	ISO	Process
GO:0006334	nucleosome assembly	-	ISO	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006352	DNA-templated transcription, initiation	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016584	nucleosome positioning	-	ISO	Process
GO:0016589	NURF complex	-	IEA	Component
GO:0016589	NURF complex	-	ISO	Component
GO:0016887	ATPase activity	-	IEA	Function
GO:0016887	ATPase activity	-	ISO	Function
GO:0031010	ISWI-type complex	-	ISO	Component
GO:0031213	RSF complex	-	ISO	Component
GO:0031491	nucleosome binding	-	IEA	Function
GO:0042393	histone binding	-	ISO	Function
GO:0043044	ATP-dependent chromatin remodeling	-	IEA	Process
GO:0043044	ATP-dependent chromatin remodeling	-	ISO	Process
GO:0043596	nuclear replication fork	-	ISO	Component
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:1990830	cellular response to leukemia inhibitory factor	-	ISO	Process