EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018194 (Gene tree)
Gene ID: 313620
Gene Symbol: Srrm1
Alias: LOC313620
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 32547 bases
Position: chr5:153675624-153708170
Accession: 1311258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000052955	PWI	PF01480.17	6.5e-30	1	1
ENSRNOP00000073024	PWI	PF01480.17	6.6e-30	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000056105	-	3623	XM_006239182	ENSRNOP00000052955	908 (aa)	XP_006239244	B2RYB3
ENSRNOT00000082037	-	3015	-	ENSRNOP00000073024	912 (aa)	-	A0A0G2K4F6

Gene Model

Click here to download ENSRNOG00000018194's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018194's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018194	Srrm1	75	95.646	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSRNOG00000018194	Srrm1	98	94.146	ENSCAFG00020020948	SRRM1	99	95.782	Canis_lupus_dingo
ENSRNOG00000018194	Srrm1	54	96.552	ENSCCAG00000029474	SRRM1	96	96.552	Cebus_capucinus
ENSRNOG00000018194	Srrm1	52	95.808	ENSCHOG00000000027	SRRM1	51	95.266	Choloepus_hoffmanni
ENSRNOG00000018194	Srrm1	100	97.467	ENSCGRG00001014174	Srrm1	100	97.467	Cricetulus_griseus_chok1gshd
ENSRNOG00000018194	Srrm1	99	97.447	ENSCGRG00000017603	Srrm1	100	97.447	Cricetulus_griseus_crigri
ENSRNOG00000018194	Srrm1	100	97.912	ENSMAUG00000015705	Srrm1	100	97.912	Mesocricetus_auratus
ENSRNOG00000018194	Srrm1	100	99.230	MGP_CAROLIEiJ_G0026636	Srrm1	100	99.230	Mus_caroli
ENSRNOG00000018194	Srrm1	100	98.790	ENSMUSG00000028809	Srrm1	100	98.790	Mus_musculus
ENSRNOG00000018194	Srrm1	100	99.119	MGP_PahariEiJ_G0028969	Srrm1	100	99.119	Mus_pahari
ENSRNOG00000018194	Srrm1	100	99.120	MGP_SPRETEiJ_G0027616	Srrm1	100	99.120	Mus_spretus
ENSRNOG00000018194	Srrm1	100	96.590	ENSNGAG00000014562	Srrm1	100	96.590	Nannospalax_galili
ENSRNOG00000018194	Srrm1	54	97.166	ENSNLEG00000008966	SRRM1	94	97.166	Nomascus_leucogenys
ENSRNOG00000018194	Srrm1	53	86.275	ENSMEUG00000014704	SRRM1	52	86.275	Notamacropus_eugenii
ENSRNOG00000018194	Srrm1	93	96.122	ENSOARG00000006453	SRRM1	99	96.122	Ovis_aries
ENSRNOG00000018194	Srrm1	100	98.350	ENSPEMG00000006254	Srrm1	100	98.350	Peromyscus_maniculatus_bairdii
ENSRNOG00000018194	Srrm1	90	95.854	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSRNOG00000018194	Srrm1	61	89.542	ENSSARG00000013718	SRRM1	60	89.542	Sorex_araneus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	IEA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component