EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018246 (Gene tree)
Gene ID: 498749
Gene Symbol: Tdp2
Alias: LOC498749|MGC124734|Ttrap
Full Name: tyrosyl-DNA phosphodiesterase 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 11425 bases
Position: chr17:42229642-42241066
Accession: 1560342
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000056326	Exo_endo_phos	PF03372.23	4.8e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000059570	-	1990	-	ENSRNOP00000056326	366 (aa)	-	G3V9Q6

Gene Model

Click here to download ENSRNOG00000018246's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018246's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018246	Tdp2	92	68.328	ENSG00000111802	TDP2	94	71.777	Homo_sapiens
ENSRNOG00000018246	Tdp2	68	53.150	ENSAPOG00000018379	-	89	53.150	Acanthochromis_polyacanthus
ENSRNOG00000018246	Tdp2	75	73.381	ENSAMEG00000010230	TDP2	99	73.381	Ailuropoda_melanoleuca
ENSRNOG00000018246	Tdp2	71	51.128	ENSAPEG00000004208	-	95	51.128	Amphiprion_percula
ENSRNOG00000018246	Tdp2	69	50.195	ENSATEG00000010663	-	93	47.222	Anabas_testudineus
ENSRNOG00000018246	Tdp2	90	60.060	ENSACAG00000002332	TDP2	92	59.882	Anolis_carolinensis
ENSRNOG00000018246	Tdp2	92	68.328	ENSANAG00000020033	TDP2	94	68.328	Aotus_nancymaae
ENSRNOG00000018246	Tdp2	77	47.119	ENSACLG00000016132	tdp2b	99	47.119	Astatotilapia_calliptera
ENSRNOG00000018246	Tdp2	75	47.143	ENSACLG00000016174	tdp2b	94	47.143	Astatotilapia_calliptera
ENSRNOG00000018246	Tdp2	66	55.061	ENSACLG00000016148	tdp2b	87	55.061	Astatotilapia_calliptera
ENSRNOG00000018246	Tdp2	68	50.391	ENSAMXG00000036549	tdp2a	83	50.391	Astyanax_mexicanus
ENSRNOG00000018246	Tdp2	94	47.105	ENSAMXG00000011775	tdp2b	97	47.326	Astyanax_mexicanus
ENSRNOG00000018246	Tdp2	92	67.347	ENSBTAG00000000365	TDP2	95	67.151	Bos_taurus
ENSRNOG00000018246	Tdp2	89	34.347	WBGene00013405	tdpt-1	85	34.347	Caenorhabditis_elegans
ENSRNOG00000018246	Tdp2	95	66.571	ENSCJAG00000006074	TDP2	92	72.857	Callithrix_jacchus
ENSRNOG00000018246	Tdp2	95	66.286	ENSCJAG00000021963	-	94	66.862	Callithrix_jacchus
ENSRNOG00000018246	Tdp2	92	68.035	ENSCAFG00000010428	TDP2	96	74.820	Canis_familiaris
ENSRNOG00000018246	Tdp2	75	74.820	ENSCAFG00020009994	TDP2	96	74.820	Canis_lupus_dingo
ENSRNOG00000018246	Tdp2	75	74.286	ENSCHIG00000015294	-	95	74.286	Capra_hircus
ENSRNOG00000018246	Tdp2	83	68.182	ENSTSYG00000037199	TDP2	99	68.506	Carlito_syrichta
ENSRNOG00000018246	Tdp2	92	68.824	ENSCPOG00000006390	TDP2	96	68.421	Cavia_porcellus
ENSRNOG00000018246	Tdp2	95	67.714	ENSCCAG00000022734	TDP2	91	74.101	Cebus_capucinus
ENSRNOG00000018246	Tdp2	92	69.208	ENSCATG00000022076	TDP2	94	72.822	Cercocebus_atys
ENSRNOG00000018246	Tdp2	95	66.189	ENSCLAG00000002072	TDP2	96	67.251	Chinchilla_lanigera
ENSRNOG00000018246	Tdp2	95	68.286	ENSCSAG00000007769	TDP2	96	69.006	Chlorocebus_sabaeus
ENSRNOG00000018246	Tdp2	92	59.587	ENSCPBG00000006551	TDP2	87	59.412	Chrysemys_picta_bellii
ENSRNOG00000018246	Tdp2	92	68.915	ENSCANG00000040122	TDP2	95	72.474	Colobus_angolensis_palliatus
ENSRNOG00000018246	Tdp2	100	84.553	ENSCGRG00001000384	Tdp2	100	84.824	Cricetulus_griseus_chok1gshd
ENSRNOG00000018246	Tdp2	93	80.352	ENSCGRG00000010250	Tdp2	94	81.416	Cricetulus_griseus_crigri
ENSRNOG00000018246	Tdp2	89	49.706	ENSCVAG00000003114	tdp2b	92	49.706	Cyprinodon_variegatus
ENSRNOG00000018246	Tdp2	89	47.887	ENSDARG00000035954	tdp2b	92	47.887	Danio_rerio
ENSRNOG00000018246	Tdp2	67	49.194	ENSDARG00000069941	tdp2a	55	49.194	Danio_rerio
ENSRNOG00000018246	Tdp2	98	63.836	ENSDNOG00000044082	TDP2	93	65.789	Dasypus_novemcinctus
ENSRNOG00000018246	Tdp2	75	71.583	ENSETEG00000019096	TDP2	100	71.583	Echinops_telfairi
ENSRNOG00000018246	Tdp2	71	51.711	ENSEBUG00000006535	tdp2a	61	51.711	Eptatretus_burgeri
ENSRNOG00000018246	Tdp2	92	67.742	ENSEASG00005007656	TDP2	94	67.544	Equus_asinus_asinus
ENSRNOG00000018246	Tdp2	92	67.449	ENSECAG00000014264	TDP2	94	67.251	Equus_caballus
ENSRNOG00000018246	Tdp2	92	65.882	ENSEEUG00000010776	TDP2	94	65.689	Erinaceus_europaeus
ENSRNOG00000018246	Tdp2	98	39.221	ENSELUG00000009321	tdp2a	77	50.602	Esox_lucius
ENSRNOG00000018246	Tdp2	89	48.451	ENSELUG00000016449	tdp2b	93	48.451	Esox_lucius
ENSRNOG00000018246	Tdp2	95	66.286	ENSFCAG00000025612	TDP2	94	66.959	Felis_catus
ENSRNOG00000018246	Tdp2	92	55.882	ENSFALG00000004710	TDP2	94	56.012	Ficedula_albicollis
ENSRNOG00000018246	Tdp2	75	73.741	ENSFDAG00000006512	TDP2	96	73.741	Fukomys_damarensis
ENSRNOG00000018246	Tdp2	73	48.718	ENSFHEG00000013560	-	93	48.540	Fundulus_heteroclitus
ENSRNOG00000018246	Tdp2	92	61.224	ENSGALG00000013637	TDP2	92	61.047	Gallus_gallus
ENSRNOG00000018246	Tdp2	97	57.182	ENSGAGG00000002853	TDP2	87	59.118	Gopherus_agassizii
ENSRNOG00000018246	Tdp2	92	68.035	ENSGGOG00000014237	TDP2	94	71.429	Gorilla_gorilla
ENSRNOG00000018246	Tdp2	52	58.115	ENSHBUG00000005421	-	96	50.000	Haplochromis_burtoni
ENSRNOG00000018246	Tdp2	99	49.194	ENSHBUG00000002714	tdp2b	94	50.729	Haplochromis_burtoni
ENSRNOG00000018246	Tdp2	95	66.571	ENSHGLG00000008655	TDP2	95	67.251	Heterocephalus_glaber_female
ENSRNOG00000018246	Tdp2	95	66.571	ENSHGLG00100019087	TDP2	95	67.251	Heterocephalus_glaber_male
ENSRNOG00000018246	Tdp2	89	50.000	ENSIPUG00000013691	tdp2b	93	50.000	Ictalurus_punctatus
ENSRNOG00000018246	Tdp2	96	67.705	ENSJJAG00000021685	Tdp2	98	69.118	Jaculus_jaculus
ENSRNOG00000018246	Tdp2	68	51.765	ENSKMAG00000015485	-	82	51.765	Kryptolebias_marmoratus
ENSRNOG00000018246	Tdp2	90	55.325	ENSLACG00000008852	TDP2	92	55.325	Latimeria_chalumnae
ENSRNOG00000018246	Tdp2	75	57.091	ENSLOCG00000005817	tdp2b	98	57.091	Lepisosteus_oculatus
ENSRNOG00000018246	Tdp2	92	69.795	ENSLAFG00000002567	TDP2	97	69.591	Loxodonta_africana
ENSRNOG00000018246	Tdp2	92	69.501	ENSMFAG00000045296	TDP2	91	75.180	Macaca_fascicularis
ENSRNOG00000018246	Tdp2	92	69.501	ENSMMUG00000009803	TDP2	96	69.298	Macaca_mulatta
ENSRNOG00000018246	Tdp2	92	69.501	ENSMNEG00000038003	TDP2	91	75.180	Macaca_nemestrina
ENSRNOG00000018246	Tdp2	92	69.208	ENSMLEG00000028883	TDP2	94	72.822	Mandrillus_leucophaeus
ENSRNOG00000018246	Tdp2	89	51.032	ENSMAMG00000013654	tdp2b	92	51.488	Mastacembelus_armatus
ENSRNOG00000018246	Tdp2	69	45.113	ENSMZEG00005003980	-	86	45.113	Maylandia_zebra
ENSRNOG00000018246	Tdp2	78	49.481	ENSMZEG00005004077	tdp2b	97	49.481	Maylandia_zebra
ENSRNOG00000018246	Tdp2	77	46.735	ENSMZEG00005004126	tdp2b	99	46.735	Maylandia_zebra
ENSRNOG00000018246	Tdp2	99	48.257	ENSMZEG00005003950	tdp2b	95	49.709	Maylandia_zebra
ENSRNOG00000018246	Tdp2	66	51.626	ENSMZEG00005004055	tdp2b	81	51.626	Maylandia_zebra
ENSRNOG00000018246	Tdp2	66	55.061	ENSMZEG00005004153	tdp2b	87	55.061	Maylandia_zebra
ENSRNOG00000018246	Tdp2	68	49.407	ENSMZEG00005004103	tdp2b	84	49.407	Maylandia_zebra
ENSRNOG00000018246	Tdp2	92	61.765	ENSMGAG00000008014	TDP2	91	61.584	Meleagris_gallopavo
ENSRNOG00000018246	Tdp2	100	85.908	ENSMAUG00000014451	Tdp2	100	86.179	Mesocricetus_auratus
ENSRNOG00000018246	Tdp2	95	67.143	ENSMICG00000000039	TDP2	94	73.381	Microcebus_murinus
ENSRNOG00000018246	Tdp2	100	84.824	ENSMOCG00000002823	Tdp2	100	85.095	Microtus_ochrogaster
ENSRNOG00000018246	Tdp2	87	57.012	ENSMODG00000011653	TDP2	94	58.442	Monodelphis_domestica
ENSRNOG00000018246	Tdp2	67	50.800	ENSMALG00000005368	-	84	50.800	Monopterus_albus
ENSRNOG00000018246	Tdp2	100	87.297	MGP_CAROLIEiJ_G0018354	Tdp2	100	87.568	Mus_caroli
ENSRNOG00000018246	Tdp2	100	87.297	ENSMUSG00000035958	Tdp2	100	86.757	Mus_musculus
ENSRNOG00000018246	Tdp2	100	86.216	MGP_PahariEiJ_G0019417	Tdp2	100	86.216	Mus_pahari
ENSRNOG00000018246	Tdp2	100	86.828	MGP_SPRETEiJ_G0019220	Tdp2	100	86.559	Mus_spretus
ENSRNOG00000018246	Tdp2	96	65.826	ENSMPUG00000004516	TDP2	96	67.442	Mustela_putorius_furo
ENSRNOG00000018246	Tdp2	98	60.111	ENSMLUG00000013506	TDP2	94	62.647	Myotis_lucifugus
ENSRNOG00000018246	Tdp2	99	73.569	ENSNGAG00000001375	Tdp2	92	76.696	Nannospalax_galili
ENSRNOG00000018246	Tdp2	93	69.186	ENSNLEG00000002447	TDP2	96	69.298	Nomascus_leucogenys
ENSRNOG00000018246	Tdp2	93	67.536	ENSOPRG00000016299	TDP2	98	67.836	Ochotona_princeps
ENSRNOG00000018246	Tdp2	75	74.460	ENSODEG00000014018	TDP2	95	74.460	Octodon_degus
ENSRNOG00000018246	Tdp2	93	66.667	ENSOCUG00000013773	TDP2	94	66.667	Oryctolagus_cuniculus
ENSRNOG00000018246	Tdp2	69	49.027	ENSORLG00000001661	-	94	49.027	Oryzias_latipes
ENSRNOG00000018246	Tdp2	69	49.027	ENSORLG00020004634	-	94	49.027	Oryzias_latipes_hni
ENSRNOG00000018246	Tdp2	69	43.798	ENSORLG00015008190	-	93	43.798	Oryzias_latipes_hsok
ENSRNOG00000018246	Tdp2	69	50.391	ENSOMEG00000015899	-	93	50.794	Oryzias_melastigma
ENSRNOG00000018246	Tdp2	96	65.819	ENSOGAG00000025303	TDP2	93	66.374	Otolemur_garnettii
ENSRNOG00000018246	Tdp2	92	68.328	ENSPPAG00000029023	TDP2	95	71.777	Pan_paniscus
ENSRNOG00000018246	Tdp2	95	66.000	ENSPPRG00000015398	TDP2	94	66.667	Panthera_pardus
ENSRNOG00000018246	Tdp2	75	73.741	ENSPTIG00000018574	TDP2	95	73.741	Panthera_tigris_altaica
ENSRNOG00000018246	Tdp2	92	68.328	ENSPTRG00000017778	TDP2	94	71.777	Pan_troglodytes
ENSRNOG00000018246	Tdp2	92	68.915	ENSPANG00000017590	TDP2	94	72.474	Papio_anubis
ENSRNOG00000018246	Tdp2	89	50.733	ENSPKIG00000006483	tdp2b	93	50.585	Paramormyrops_kingsleyae
ENSRNOG00000018246	Tdp2	69	68.898	ENSPSIG00000004948	TDP2	88	68.898	Pelodiscus_sinensis
ENSRNOG00000018246	Tdp2	100	85.405	ENSPEMG00000001788	Tdp2	100	85.676	Peromyscus_maniculatus_bairdii
ENSRNOG00000018246	Tdp2	68	46.816	ENSPMAG00000001570	tdp2b	97	46.816	Petromyzon_marinus
ENSRNOG00000018246	Tdp2	92	58.187	ENSPCIG00000007316	TDP2	89	58.187	Phascolarctos_cinereus
ENSRNOG00000018246	Tdp2	70	50.192	ENSPFOG00000017990	-	93	49.810	Poecilia_formosa
ENSRNOG00000018246	Tdp2	80	44.918	ENSPLAG00000019439	-	94	44.918	Poecilia_latipinna
ENSRNOG00000018246	Tdp2	67	51.200	ENSPMEG00000010824	-	84	51.200	Poecilia_mexicana
ENSRNOG00000018246	Tdp2	92	68.622	ENSPPYG00000016282	TDP2	87	68.421	Pongo_abelii
ENSRNOG00000018246	Tdp2	92	67.941	ENSPCOG00000021415	TDP2	98	73.118	Propithecus_coquereli
ENSRNOG00000018246	Tdp2	99	47.312	ENSPNYG00000011532	tdp2b	94	48.688	Pundamilia_nyererei
ENSRNOG00000018246	Tdp2	66	51.711	ENSPNYG00000011504	tdp2b	86	51.711	Pundamilia_nyererei
ENSRNOG00000018246	Tdp2	67	52.033	ENSPNAG00000022162	tdp2a	63	52.033	Pygocentrus_nattereri
ENSRNOG00000018246	Tdp2	92	68.622	ENSRBIG00000037119	TDP2	92	74.460	Rhinopithecus_bieti
ENSRNOG00000018246	Tdp2	92	68.622	ENSRROG00000005025	TDP2	92	74.101	Rhinopithecus_roxellana
ENSRNOG00000018246	Tdp2	99	65.217	ENSSBOG00000028734	TDP2	91	74.460	Saimiri_boliviensis_boliviensis
ENSRNOG00000018246	Tdp2	99	56.831	ENSSHAG00000002506	TDP2	91	58.480	Sarcophilus_harrisii
ENSRNOG00000018246	Tdp2	71	50.397	ENSSFOG00015011322	-	71	51.190	Scleropages_formosus
ENSRNOG00000018246	Tdp2	75	69.534	ENSSARG00000013547	TDP2	100	69.534	Sorex_araneus
ENSRNOG00000018246	Tdp2	92	58.120	ENSSPUG00000008288	TDP2	95	58.120	Sphenodon_punctatus
ENSRNOG00000018246	Tdp2	92	67.449	ENSSSCG00000001092	TDP2	94	67.251	Sus_scrofa
ENSRNOG00000018246	Tdp2	69	65.354	ENSTGUG00000009035	TDP2	97	65.354	Taeniopygia_guttata
ENSRNOG00000018246	Tdp2	67	51.793	ENSTRUG00000012218	-	87	51.793	Takifugu_rubripes
ENSRNOG00000018246	Tdp2	99	46.257	ENSTRUG00000014347	tdp2b	93	48.512	Takifugu_rubripes
ENSRNOG00000018246	Tdp2	90	48.521	ENSTNIG00000017792	tdp2b	93	48.521	Tetraodon_nigroviridis
ENSRNOG00000018246	Tdp2	68	50.391	ENSTNIG00000010260	TDP2	97	50.195	Tetraodon_nigroviridis
ENSRNOG00000018246	Tdp2	92	67.742	ENSTTRG00000016376	TDP2	94	67.836	Tursiops_truncatus
ENSRNOG00000018246	Tdp2	93	65.407	ENSUAMG00000025939	TDP2	95	65.497	Ursus_americanus
ENSRNOG00000018246	Tdp2	75	73.381	ENSUMAG00000020111	TDP2	93	73.381	Ursus_maritimus
ENSRNOG00000018246	Tdp2	96	55.858	ENSXETG00000014826	tdp2	95	57.062	Xenopus_tropicalis
ENSRNOG00000018246	Tdp2	69	50.388	ENSXCOG00000010778	-	72	50.000	Xiphophorus_couchianus
ENSRNOG00000018246	Tdp2	69	50.388	ENSXMAG00000022252	-	74	50.388	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000287	magnesium ion binding	-	IEA	Function
GO:0000287	magnesium ion binding	-	ISO	Function
GO:0000287	magnesium ion binding	-	ISS	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	-	ISS	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0006302	double-strand break repair	-	IEA	Process
GO:0006302	double-strand break repair	-	ISO	Process
GO:0006302	double-strand break repair	-	ISS	Process
GO:0016235	aggresome	-	IEA	Component
GO:0016235	aggresome	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0016605	PML body	21873635.	IBA	Component
GO:0016605	PML body	-	IEA	Component
GO:0016605	PML body	-	ISO	Component
GO:0016605	PML body	-	ISS	Component
GO:0030145	manganese ion binding	-	IEA	Function
GO:0030145	manganese ion binding	-	ISO	Function
GO:0030145	manganese ion binding	-	ISS	Function
GO:0036317	tyrosyl-RNA phosphodiesterase activity	-	IEA	Function
GO:0036317	tyrosyl-RNA phosphodiesterase activity	-	ISO	Function
GO:0048666	neuron development	-	IEA	Process
GO:0048666	neuron development	-	ISO	Process
GO:0048666	neuron development	-	ISS	Process
GO:0070260	5'-tyrosyl-DNA phosphodiesterase activity	21873635.	IBA	Function
GO:0070260	5'-tyrosyl-DNA phosphodiesterase activity	-	IEA	Function
GO:0070260	5'-tyrosyl-DNA phosphodiesterase activity	-	ISO	Function
GO:0070260	5'-tyrosyl-DNA phosphodiesterase activity	-	ISS	Function
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	IEA	Process