EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018273 (Gene tree)
Gene ID: 25135
Gene Symbol: Ncl
Alias: MGC93572
Full Name: nucleolin
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 8712 bases
Position: chr9:93368932-93377643
Accession: 3153
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000024712	RRM_1	PF00076.22	2.1e-59	1	4
ENSRNOP00000024712	RRM_1	PF00076.22	2.1e-59	2	4
ENSRNOP00000024712	RRM_1	PF00076.22	2.1e-59	3	4
ENSRNOP00000024712	RRM_1	PF00076.22	2.1e-59	4	4

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000024712	-	2582	-	ENSRNOP00000024712	714 (aa)	-	Q5U328

Gene Model

Click here to download ENSRNOG00000018273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018273's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018273	Ncl	61	85.714	ENSG00000115053	NCL	93	83.273	Homo_sapiens
ENSRNOG00000018273	Ncl	53	88.391	ENSAMEG00000016289	NCL	92	79.123	Ailuropoda_melanoleuca
ENSRNOG00000018273	Ncl	92	79.818	ENSANAG00000035814	-	92	80.577	Aotus_nancymaae
ENSRNOG00000018273	Ncl	99	66.147	ENSANAG00000024378	-	85	71.779	Aotus_nancymaae
ENSRNOG00000018273	Ncl	94	78.509	ENSBTAG00000016174	NCL	92	79.217	Bos_taurus
ENSRNOG00000018273	Ncl	79	87.143	ENSBTAG00000051320	-	82	86.854	Bos_taurus
ENSRNOG00000018273	Ncl	81	86.008	ENSBTAG00000050728	-	89	86.008	Bos_taurus
ENSRNOG00000018273	Ncl	68	87.029	ENSBTAG00000026909	-	82	87.395	Bos_taurus
ENSRNOG00000018273	Ncl	92	77.979	ENSCJAG00000013538	NCL	92	77.410	Callithrix_jacchus
ENSRNOG00000018273	Ncl	92	80.514	ENSCAFG00000011037	NCL	92	79.758	Canis_familiaris
ENSRNOG00000018273	Ncl	84	80.131	ENSCAFG00020023145	NCL	89	79.310	Canis_lupus_dingo
ENSRNOG00000018273	Ncl	92	71.880	ENSCHIG00000026149	-	93	72.481	Capra_hircus
ENSRNOG00000018273	Ncl	92	91.189	ENSCHIG00000021052	-	81	91.189	Capra_hircus
ENSRNOG00000018273	Ncl	85	79.445	ENSCHIG00000010894	-	91	79.119	Capra_hircus
ENSRNOG00000018273	Ncl	89	74.000	ENSCHIG00000012143	-	92	67.023	Capra_hircus
ENSRNOG00000018273	Ncl	71	75.822	ENSTSYG00000036886	-	86	74.487	Carlito_syrichta
ENSRNOG00000018273	Ncl	92	79.066	ENSTSYG00000004355	-	92	77.410	Carlito_syrichta
ENSRNOG00000018273	Ncl	95	75.556	ENSTSYG00000029779	-	98	73.220	Carlito_syrichta
ENSRNOG00000018273	Ncl	91	76.031	ENSCAPG00000009405	NCL	91	74.351	Cavia_aperea
ENSRNOG00000018273	Ncl	92	79.123	ENSCPOG00000001034	NCL	92	77.761	Cavia_porcellus
ENSRNOG00000018273	Ncl	52	86.935	ENSCCAG00000000551	-	82	87.065	Cebus_capucinus
ENSRNOG00000018273	Ncl	53	88.654	ENSCCAG00000021040	-	92	79.331	Cebus_capucinus
ENSRNOG00000018273	Ncl	92	80.182	ENSCATG00000037033	NCL	92	79.879	Cercocebus_atys
ENSRNOG00000018273	Ncl	92	78.733	ENSCLAG00000013080	NCL	92	76.621	Chinchilla_lanigera
ENSRNOG00000018273	Ncl	53	88.421	ENSCSAG00000006660	NCL	95	89.749	Chlorocebus_sabaeus
ENSRNOG00000018273	Ncl	61	70.737	ENSCHOG00000012860	NCL	89	70.023	Choloepus_hoffmanni
ENSRNOG00000018273	Ncl	92	86.910	ENSCGRG00001024315	-	91	86.910	Cricetulus_griseus_chok1gshd
ENSRNOG00000018273	Ncl	92	72.700	ENSCGRG00001022350	-	95	71.927	Cricetulus_griseus_chok1gshd
ENSRNOG00000018273	Ncl	85	88.006	ENSCGRG00000017894	-	88	86.753	Cricetulus_griseus_crigri
ENSRNOG00000018273	Ncl	92	73.182	ENSCGRG00000000507	-	93	71.037	Cricetulus_griseus_crigri
ENSRNOG00000018273	Ncl	100	70.572	ENSDNOG00000046347	-	99	70.153	Dasypus_novemcinctus
ENSRNOG00000018273	Ncl	92	77.828	ENSDNOG00000010783	-	92	78.130	Dasypus_novemcinctus
ENSRNOG00000018273	Ncl	51	76.712	ENSDORG00000023596	-	92	69.432	Dipodomys_ordii
ENSRNOG00000018273	Ncl	53	87.302	ENSDORG00000012513	-	91	78.387	Dipodomys_ordii
ENSRNOG00000018273	Ncl	53	83.905	ENSETEG00000018937	-	85	73.333	Echinops_telfairi
ENSRNOG00000018273	Ncl	72	60.326	ENSETEG00000008139	-	89	60.163	Echinops_telfairi
ENSRNOG00000018273	Ncl	53	83.289	ENSETEG00000014756	-	86	83.377	Echinops_telfairi
ENSRNOG00000018273	Ncl	62	56.208	ENSETEG00000008553	-	88	56.849	Echinops_telfairi
ENSRNOG00000018273	Ncl	89	80.775	ENSEASG00005008488	NCL	91	78.605	Equus_asinus_asinus
ENSRNOG00000018273	Ncl	92	80.484	ENSECAG00000021868	NCL	92	78.669	Equus_caballus
ENSRNOG00000018273	Ncl	53	82.804	ENSEEUG00000005913	NCL	85	74.262	Erinaceus_europaeus
ENSRNOG00000018273	Ncl	92	80.241	ENSFCAG00000027622	NCL	92	79.487	Felis_catus
ENSRNOG00000018273	Ncl	91	78.267	ENSFDAG00000014291	NCL	92	77.356	Fukomys_damarensis
ENSRNOG00000018273	Ncl	92	79.154	ENSGGOG00000004300	NCL	91	89.216	Gorilla_gorilla
ENSRNOG00000018273	Ncl	53	88.654	ENSHGLG00000002031	-	92	77.677	Heterocephalus_glaber_female
ENSRNOG00000018273	Ncl	53	81.117	ENSHGLG00000011069	-	62	76.941	Heterocephalus_glaber_female
ENSRNOG00000018273	Ncl	52	80.267	ENSHGLG00100000745	-	59	80.371	Heterocephalus_glaber_male
ENSRNOG00000018273	Ncl	53	88.391	ENSHGLG00100014537	-	92	77.610	Heterocephalus_glaber_male
ENSRNOG00000018273	Ncl	53	85.979	ENSJJAG00000016165	Ncl	91	79.475	Jaculus_jaculus
ENSRNOG00000018273	Ncl	91	67.328	ENSLAFG00000013061	NCL	91	65.449	Loxodonta_africana
ENSRNOG00000018273	Ncl	92	79.607	ENSMFAG00000040385	NCL	92	79.305	Macaca_fascicularis
ENSRNOG00000018273	Ncl	92	79.607	ENSMMUG00000018094	NCL	92	79.305	Macaca_mulatta
ENSRNOG00000018273	Ncl	75	93.636	ENSMNEG00000023839	NCL	64	85.068	Macaca_nemestrina
ENSRNOG00000018273	Ncl	92	80.333	ENSMLEG00000028935	NCL	92	80.030	Mandrillus_leucophaeus
ENSRNOG00000018273	Ncl	92	65.502	ENSMICG00000029975	-	91	76.596	Microcebus_murinus
ENSRNOG00000018273	Ncl	92	80.333	ENSMICG00000002538	-	92	79.728	Microcebus_murinus
ENSRNOG00000018273	Ncl	92	91.006	MGP_CAROLIEiJ_G0014362	Ncl	92	91.006	Mus_caroli
ENSRNOG00000018273	Ncl	92	90.549	ENSMUSG00000026234	Ncl	92	90.854	Mus_musculus
ENSRNOG00000018273	Ncl	92	89.939	MGP_PahariEiJ_G0027599	Ncl	92	91.311	Mus_pahari
ENSRNOG00000018273	Ncl	92	90.701	MGP_SPRETEiJ_G0015164	Ncl	92	90.701	Mus_spretus
ENSRNOG00000018273	Ncl	92	76.284	ENSMLUG00000014547	NCL	92	77.492	Myotis_lucifugus
ENSRNOG00000018273	Ncl	92	86.898	ENSNGAG00000002454	-	91	86.495	Nannospalax_galili
ENSRNOG00000018273	Ncl	72	79.365	ENSNGAG00000006188	-	54	79.365	Nannospalax_galili
ENSRNOG00000018273	Ncl	61	73.016	ENSNLEG00000014107	-	85	68.421	Nomascus_leucogenys
ENSRNOG00000018273	Ncl	92	81.356	ENSODEG00000002441	-	84	81.356	Octodon_degus
ENSRNOG00000018273	Ncl	91	75.951	ENSODEG00000003281	-	91	75.532	Octodon_degus
ENSRNOG00000018273	Ncl	91	60.391	ENSODEG00000007803	-	90	59.147	Octodon_degus
ENSRNOG00000018273	Ncl	92	73.130	ENSOCUG00000004312	NCL	91	71.908	Oryctolagus_cuniculus
ENSRNOG00000018273	Ncl	73	82.058	ENSOGAG00000027852	NCL	77	82.058	Otolemur_garnettii
ENSRNOG00000018273	Ncl	69	86.207	ENSOARG00000013710	-	73	83.524	Ovis_aries
ENSRNOG00000018273	Ncl	62	71.685	ENSOARG00000004072	-	71	71.918	Ovis_aries
ENSRNOG00000018273	Ncl	88	62.676	ENSOARG00000013270	-	100	61.644	Ovis_aries
ENSRNOG00000018273	Ncl	91	74.579	ENSOARG00000020709	-	92	75.345	Ovis_aries
ENSRNOG00000018273	Ncl	75	93.636	ENSPPAG00000011619	NCL	92	79.305	Pan_paniscus
ENSRNOG00000018273	Ncl	92	79.909	ENSPPRG00000012603	NCL	92	79.154	Panthera_pardus
ENSRNOG00000018273	Ncl	91	79.726	ENSPTIG00000010393	NCL	91	78.963	Panthera_tigris_altaica
ENSRNOG00000018273	Ncl	92	79.940	ENSPTRG00000013025	NCL	92	79.638	Pan_troglodytes
ENSRNOG00000018273	Ncl	92	79.607	ENSPANG00000010292	NCL	92	79.305	Papio_anubis
ENSRNOG00000018273	Ncl	61	76.222	ENSPPYG00000013265	NCL	92	73.472	Pongo_abelii
ENSRNOG00000018273	Ncl	92	81.297	ENSPCOG00000003051	-	91	79.638	Propithecus_coquereli
ENSRNOG00000018273	Ncl	91	75.613	ENSPCOG00000004160	-	94	74.351	Propithecus_coquereli
ENSRNOG00000018273	Ncl	92	80.758	ENSPVAG00000000297	NCL	92	79.394	Pteropus_vampyrus
ENSRNOG00000018273	Ncl	76	90.311	ENSRBIG00000035396	-	88	88.591	Rhinopithecus_bieti
ENSRNOG00000018273	Ncl	92	76.631	ENSRBIG00000037525	-	91	75.569	Rhinopithecus_bieti
ENSRNOG00000018273	Ncl	92	79.305	ENSRROG00000028756	-	86	86.992	Rhinopithecus_roxellana
ENSRNOG00000018273	Ncl	91	90.857	ENSRROG00000036103	-	99	75.680	Rhinopithecus_roxellana
ENSRNOG00000018273	Ncl	61	76.993	ENSSBOG00000027549	-	83	80.211	Saimiri_boliviensis_boliviensis
ENSRNOG00000018273	Ncl	53	88.391	ENSSBOG00000029193	-	92	78.765	Saimiri_boliviensis_boliviensis
ENSRNOG00000018273	Ncl	56	72.936	ENSSBOG00000023094	-	76	73.182	Saimiri_boliviensis_boliviensis
ENSRNOG00000018273	Ncl	92	78.593	ENSSSCG00000016275	NCL	92	77.395	Sus_scrofa
ENSRNOG00000018273	Ncl	65	74.221	ENSTBEG00000002469	-	66	74.000	Tupaia_belangeri
ENSRNOG00000018273	Ncl	55	75.989	ENSTBEG00000001546	-	85	70.425	Tupaia_belangeri
ENSRNOG00000018273	Ncl	92	79.666	ENSTTRG00000009094	NCL	91	78.756	Tursiops_truncatus
ENSRNOG00000018273	Ncl	67	88.421	ENSUAMG00000005639	NCL	88	84.650	Ursus_americanus
ENSRNOG00000018273	Ncl	53	88.654	ENSUMAG00000015789	NCL	92	79.818	Ursus_maritimus
ENSRNOG00000018273	Ncl	68	81.690	ENSVPAG00000001796	NCL	69	81.690	Vicugna_pacos
ENSRNOG00000018273	Ncl	92	78.049	ENSVVUG00000025564	NCL	91	77.287	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001525	angiogenesis	-	IEA	Process
GO:0001525	angiogenesis	-	ISO	Process
GO:0001650	fibrillar center	6206987.	IDA	Component
GO:0001651	dense fibrillar component	6206987.	IDA	Component
GO:0003697	single-stranded DNA binding	6311246.	IDA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	2049089.	IDA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005102	signaling receptor binding	18523588.	IDA	Function
GO:0005509	calcium ion binding	11948683.	IDA	Function
GO:0005515	protein binding	16854843.24882364.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	8424749.	IDA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	9636677.	IDA	Component
GO:0005938	cell cortex	-	IEA	Component
GO:0005938	cell cortex	-	ISO	Component
GO:0006897	endocytosis	21309751.	IMP	Process
GO:0007283	spermatogenesis	19570216.	IEP	Process
GO:0008022	protein C-terminus binding	-	IEA	Function
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0009986	cell surface	23912744.	IDA	Component
GO:0017148	negative regulation of translation	-	IEA	Process
GO:0017148	negative regulation of translation	-	ISO	Process
GO:0032760	positive regulation of tumor necrosis factor production	21309751.	IMP	Process
GO:0035368	selenocysteine insertion sequence binding	20385601.	IDA	Function
GO:0036464	cytoplasmic ribonucleoprotein granule	-	IEA	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0042134	rRNA primary transcript binding	3790520.	IDA	Function
GO:0042162	telomeric DNA binding	-	IEA	Function
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0042162	telomeric DNA binding	-	ISS	Function
GO:0042393	histone binding	8424749.	IDA	Function
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043066	negative regulation of apoptotic process	20050922.	IMP	Process
GO:0043236	laminin binding	8583499.	IDA	Function
GO:0043565	sequence-specific DNA binding	6311246.	IDA	Function
GO:0044547	DNA topoisomerase binding	-	IEA	Function
GO:0044547	DNA topoisomerase binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048027	mRNA 5'-UTR binding	-	IEA	Function
GO:0048027	mRNA 5'-UTR binding	-	ISO	Function
GO:0071222	cellular response to lipopolysaccharide	21309751.	IMP	Process
GO:0071364	cellular response to epidermal growth factor stimulus	-	IEA	Process
GO:0071364	cellular response to epidermal growth factor stimulus	-	ISO	Process
GO:0097421	liver regeneration	7490256.	IEP	Process
GO:1901838	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I	-	IEA	Process
GO:1901838	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I	-	ISO	Process
GO:1990631	ErbB-4 class receptor binding	18523588.	IPI	Function
GO:1990830	cellular response to leukemia inhibitory factor	-	IEA	Process
GO:1990830	cellular response to leukemia inhibitory factor	-	ISO	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	-	ISO	Component
GO:1990904	ribonucleoprotein complex	-	ISS	Component
GO:2000232	regulation of rRNA processing	2049089.	IDA	Process
GO:2000778	positive regulation of interleukin-6 secretion	21309751.	IMP	Process