EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000018309 (Gene tree)
Gene ID
117535
Gene Symbol
Chd4
Alias
LOC312712|Mi-2
Full Name
chromodomain helicase DNA binding protein 4
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
33124 bases
Position
chr4:157612536-157645659
Accession
620064
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000052823ResIIIPF04851.152.5e-1011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000055970-6584XM_001063352ENSRNOP000000528231921 (aa)XP_001063352E9PU01
Gene Model
Click here to download ENSRNOG00000018309's gene model file
Pathways
Pathway IDPathway NameSource
rno05165Human papillomavirus infectionKEGG
rno05203Viral carcinogenesisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018309's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000018309Chd49070.899ENSRNOG00000009722Chd37674.663
ENSRNOG00000018309Chd49670.774ENSRNOG00000011268Chd59570.498
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000018309Chd410097.657ENSG00000111642CHD410097.657Homo_sapiens
ENSRNOG00000018309Chd49370.148ENSAPOG00000020502-9369.890Acanthochromis_polyacanthus
ENSRNOG00000018309Chd49378.372ENSAPOG00000008935chd4a9878.830Acanthochromis_polyacanthus
ENSRNOG00000018309Chd410097.044ENSAMEG00000014179-9997.044Ailuropoda_melanoleuca
ENSRNOG00000018309Chd49381.162ENSACIG00000019310chd4a8994.366Amphilophus_citrinellus
ENSRNOG00000018309Chd49376.042ENSACIG00000012387-8888.136Amphilophus_citrinellus
ENSRNOG00000018309Chd49874.415ENSAOCG00000000507-9975.376Amphiprion_ocellaris
ENSRNOG00000018309Chd49380.210ENSAOCG00000016412-9880.684Amphiprion_ocellaris
ENSRNOG00000018309Chd47682.807ENSAPEG00000001757chd4a9977.382Amphiprion_percula
ENSRNOG00000018309Chd49670.719ENSAPEG00000020306-8983.019Amphiprion_percula
ENSRNOG00000018309Chd49574.286ENSAPEG00000005957-9874.784Amphiprion_percula
ENSRNOG00000018309Chd48574.348ENSATEG00000021141-9180.381Anabas_testudineus
ENSRNOG00000018309Chd49371.444ENSATEG00000000976-9371.405Anabas_testudineus
ENSRNOG00000018309Chd48984.190ENSATEG00000016428chd4a9587.234Anabas_testudineus
ENSRNOG00000018309Chd49988.202ENSAPLG00000014146-9988.235Anas_platyrhynchos
ENSRNOG00000018309Chd49989.362ENSACAG00000006231-9988.826Anolis_carolinensis
ENSRNOG00000018309Chd410097.501ENSANAG00000035685-10097.501Aotus_nancymaae
ENSRNOG00000018309Chd49476.852ENSACLG00000015837chd4a9576.910Astatotilapia_calliptera
ENSRNOG00000018309Chd49675.253ENSACLG00000024468-9975.215Astatotilapia_calliptera
ENSRNOG00000018309Chd49577.550ENSAMXG00000010614-9590.749Astyanax_mexicanus
ENSRNOG00000018309Chd49680.161ENSAMXG00000019969chd4a9878.664Astyanax_mexicanus
ENSRNOG00000018309Chd410096.992ENSBTAG00000014734CHD410096.992Bos_taurus
ENSRNOG00000018309Chd410097.097ENSCJAG00000008114-10097.097Callithrix_jacchus
ENSRNOG00000018309Chd410097.459ENSCAFG00000014929CHD410097.459Canis_familiaris
ENSRNOG00000018309Chd410097.137ENSCAFG00020002892-10097.137Canis_lupus_dingo
ENSRNOG00000018309Chd410097.345ENSCHIG00000020766-10097.345Capra_hircus
ENSRNOG00000018309Chd49995.731ENSTSYG00000006069-9995.731Carlito_syrichta
ENSRNOG00000018309Chd49897.256ENSCPOG00000008504-9997.256Cavia_porcellus
ENSRNOG00000018309Chd410097.147ENSCCAG00000009686-10097.147Cebus_capucinus
ENSRNOG00000018309Chd410097.199ENSCATG00000006345-10097.199Cercocebus_atys
ENSRNOG00000018309Chd410097.657ENSCLAG00000012244-10097.657Chinchilla_lanigera
ENSRNOG00000018309Chd410097.355ENSCSAG00000010429-10097.355Chlorocebus_sabaeus
ENSRNOG00000018309Chd483100.000ENSCHOG00000000277-84100.000Choloepus_hoffmanni
ENSRNOG00000018309Chd49989.838ENSCPBG00000027716-9590.344Chrysemys_picta_bellii
ENSRNOG00000018309Chd49254.928ENSCSAVG00000004448-9961.783Ciona_savignyi
ENSRNOG00000018309Chd410092.591ENSCANG00000035317-9995.595Colobus_angolensis_palliatus
ENSRNOG00000018309Chd410097.873ENSCGRG00001020662Chd410097.873Cricetulus_griseus_chok1gshd
ENSRNOG00000018309Chd49998.633ENSCGRG00000015920Chd410098.633Cricetulus_griseus_crigri
ENSRNOG00000018309Chd48888.235ENSCSEG00000017173chd4a9289.177Cynoglossus_semilaevis
ENSRNOG00000018309Chd49577.248ENSCSEG00000019943-9876.483Cynoglossus_semilaevis
ENSRNOG00000018309Chd49269.727ENSCSEG00000018096-8779.909Cynoglossus_semilaevis
ENSRNOG00000018309Chd49676.312ENSCVAG00000001128-8180.352Cyprinodon_variegatus
ENSRNOG00000018309Chd48890.789ENSCVAG00000004940chd4a9491.892Cyprinodon_variegatus
ENSRNOG00000018309Chd49371.126ENSCVAG00000016412-8781.279Cyprinodon_variegatus
ENSRNOG00000018309Chd49677.749ENSDARG00000063535chd4a9976.247Danio_rerio
ENSRNOG00000018309Chd410096.786ENSDNOG00000001134-10096.786Dasypus_novemcinctus
ENSRNOG00000018309Chd49995.688ENSDORG00000001847Chd49895.688Dipodomys_ordii
ENSRNOG00000018309Chd47573.487ENSEBUG00000012670chd4a9275.723Eptatretus_burgeri
ENSRNOG00000018309Chd410097.147ENSEASG00005016150-10097.147Equus_asinus_asinus
ENSRNOG00000018309Chd410097.095ENSECAG00000022005CHD410097.095Equus_caballus
ENSRNOG00000018309Chd49278.683ENSELUG00000021276chd4a9089.130Esox_lucius
ENSRNOG00000018309Chd49577.501ENSELUG00000018086-9678.727Esox_lucius
ENSRNOG00000018309Chd410097.459ENSFCAG00000006877-10097.459Felis_catus
ENSRNOG00000018309Chd48094.175ENSFALG00000004785-9794.291Ficedula_albicollis
ENSRNOG00000018309Chd410095.150ENSFDAG00000020219-10095.150Fukomys_damarensis
ENSRNOG00000018309Chd48777.610ENSFHEG00000012736-9778.644Fundulus_heteroclitus
ENSRNOG00000018309Chd49580.368ENSFHEG00000002013chd4a9874.892Fundulus_heteroclitus
ENSRNOG00000018309Chd49370.729ENSFHEG00000003253-9281.279Fundulus_heteroclitus
ENSRNOG00000018309Chd47397.561ENSGMOG00000017923-7793.939Gadus_morhua
ENSRNOG00000018309Chd45384.736ENSGMOG00000015722chd4a9485.163Gadus_morhua
ENSRNOG00000018309Chd45088.259ENSGMOG00000003394-7888.259Gadus_morhua
ENSRNOG00000018309Chd46091.349ENSGALG00000013565-9891.609Gallus_gallus
ENSRNOG00000018309Chd48291.284ENSGAFG00000014337-9989.732Gambusia_affinis
ENSRNOG00000018309Chd49775.559ENSGAFG00000002778chd4a9874.640Gambusia_affinis
ENSRNOG00000018309Chd49575.502ENSGACG00000018705chd4a9975.365Gasterosteus_aculeatus
ENSRNOG00000018309Chd45281.923ENSGACG00000010099-9281.635Gasterosteus_aculeatus
ENSRNOG00000018309Chd49989.671ENSGAGG00000001416-9690.188Gopherus_agassizii
ENSRNOG00000018309Chd410097.251ENSGGOG00000001930CHD410097.251Gorilla_gorilla
ENSRNOG00000018309Chd48986.620ENSHBUG00000019146chd4a8686.385Haplochromis_burtoni
ENSRNOG00000018309Chd49675.426ENSHBUG00000016000-9975.282Haplochromis_burtoni
ENSRNOG00000018309Chd410097.657ENSHGLG00000003093-10097.657Heterocephalus_glaber_female
ENSRNOG00000018309Chd410097.303ENSHGLG00100007450-10097.303Heterocephalus_glaber_male
ENSRNOG00000018309Chd48873.858ENSHCOG00000017525-9585.484Hippocampus_comes
ENSRNOG00000018309Chd47374.236ENSHCOG00000014308-8873.776Hippocampus_comes
ENSRNOG00000018309Chd49679.461ENSIPUG00000005694chd49978.245Ictalurus_punctatus
ENSRNOG00000018309Chd49997.348ENSSTOG00000007601-9997.348Ictidomys_tridecemlineatus
ENSRNOG00000018309Chd410096.888ENSJJAG00000012394Chd410097.234Jaculus_jaculus
ENSRNOG00000018309Chd49380.054ENSKMAG00000019286chd4a9879.449Kryptolebias_marmoratus
ENSRNOG00000018309Chd48580.617ENSKMAG00000017827-9080.822Kryptolebias_marmoratus
ENSRNOG00000018309Chd49974.294ENSKMAG00000007932-8076.452Kryptolebias_marmoratus
ENSRNOG00000018309Chd49575.858ENSLBEG00000012434CHD49674.367Labrus_bergylta
ENSRNOG00000018309Chd47973.423ENSLBEG00000026652-9473.113Labrus_bergylta
ENSRNOG00000018309Chd49975.369ENSLOCG00000007438chd4a9975.256Lepisosteus_oculatus
ENSRNOG00000018309Chd47890.839ENSLAFG00000022842-9993.841Loxodonta_africana
ENSRNOG00000018309Chd410097.251ENSMFAG00000003188-10097.251Macaca_fascicularis
ENSRNOG00000018309Chd410095.757ENSMMUG00000018685-10095.757Macaca_mulatta
ENSRNOG00000018309Chd410095.285ENSMNEG00000044776-10095.285Macaca_nemestrina
ENSRNOG00000018309Chd410095.181ENSMLEG00000024661-10095.181Mandrillus_leucophaeus
ENSRNOG00000018309Chd49369.983ENSMAMG00000002137-8780.365Mastacembelus_armatus
ENSRNOG00000018309Chd49674.545ENSMAMG00000002584-8987.712Mastacembelus_armatus
ENSRNOG00000018309Chd49681.109ENSMAMG00000018954chd4a9592.627Mastacembelus_armatus
ENSRNOG00000018309Chd49675.373ENSMZEG00005017761-9975.228Maylandia_zebra
ENSRNOG00000018309Chd49877.130ENSMZEG00005001706chd4a9876.255Maylandia_zebra
ENSRNOG00000018309Chd49990.155ENSMGAG00000014084-9989.990Meleagris_gallopavo
ENSRNOG00000018309Chd410097.407ENSMICG00000006588-10097.407Microcebus_murinus
ENSRNOG00000018309Chd410098.542ENSMOCG00000020624Chd410098.542Microtus_ochrogaster
ENSRNOG00000018309Chd47375.862ENSMMOG00000013429-8675.388Mola_mola
ENSRNOG00000018309Chd49577.411ENSMMOG00000000073chd4a9876.685Mola_mola
ENSRNOG00000018309Chd49574.839ENSMMOG00000015971-8077.718Mola_mola
ENSRNOG00000018309Chd48294.490ENSMODG00000018094-10094.490Monodelphis_domestica
ENSRNOG00000018309Chd49576.894ENSMALG00000005766chd4a9778.433Monopterus_albus
ENSRNOG00000018309Chd49675.431ENSMALG00000022494-9476.267Monopterus_albus
ENSRNOG00000018309Chd410098.803ENSMUSG00000063870Chd410098.803Mus_musculus
ENSRNOG00000018309Chd410098.803MGP_SPRETEiJ_G0029911Chd410098.803Mus_spretus
ENSRNOG00000018309Chd410097.407ENSMPUG00000016859-10097.407Mustela_putorius_furo
ENSRNOG00000018309Chd410097.199ENSMLUG00000014343-9997.199Myotis_lucifugus
ENSRNOG00000018309Chd410095.747ENSNGAG00000016920Chd410095.747Nannospalax_galili
ENSRNOG00000018309Chd49675.213ENSNBRG00000021576-9975.215Neolamprologus_brichardi
ENSRNOG00000018309Chd49995.870ENSNLEG00000004330-9695.870Nomascus_leucogenys
ENSRNOG00000018309Chd48298.400ENSMEUG00000015294-8498.400Notamacropus_eugenii
ENSRNOG00000018309Chd48696.998ENSOPRG00000003477-83100.000Ochotona_princeps
ENSRNOG00000018309Chd49997.550ENSODEG00000003114-9997.550Octodon_degus
ENSRNOG00000018309Chd49578.416ENSONIG00000006992chd4a9976.955Oreochromis_niloticus
ENSRNOG00000018309Chd49876.235ENSONIG00000012953-9976.113Oreochromis_niloticus
ENSRNOG00000018309Chd410095.021ENSOCUG00000008215-9995.021Oryctolagus_cuniculus
ENSRNOG00000018309Chd49676.004ENSORLG00000012477-9874.139Oryzias_latipes
ENSRNOG00000018309Chd49577.477ENSORLG00000006310chd4a9875.389Oryzias_latipes
ENSRNOG00000018309Chd49669.839ENSORLG00000017190-9081.106Oryzias_latipes
ENSRNOG00000018309Chd47375.193ENSORLG00020011739-8775.070Oryzias_latipes_hni
ENSRNOG00000018309Chd49676.136ENSORLG00020004891-9873.765Oryzias_latipes_hni
ENSRNOG00000018309Chd49577.306ENSORLG00020006529chd4a9875.337Oryzias_latipes_hni
ENSRNOG00000018309Chd49577.516ENSORLG00015010692-9577.448Oryzias_latipes_hsok
ENSRNOG00000018309Chd49578.101ENSORLG00015019674chd4a9875.285Oryzias_latipes_hsok
ENSRNOG00000018309Chd49368.661ENSOMEG00000014929-7671.458Oryzias_melastigma
ENSRNOG00000018309Chd48983.846ENSOMEG00000016394chd4a9186.975Oryzias_melastigma
ENSRNOG00000018309Chd49875.117ENSOMEG00000013408-9288.136Oryzias_melastigma
ENSRNOG00000018309Chd410095.603ENSOGAG00000010031-10095.603Otolemur_garnettii
ENSRNOG00000018309Chd49896.943ENSOARG00000007398-10096.943Ovis_aries
ENSRNOG00000018309Chd410097.150ENSPPAG00000029007-10097.150Pan_paniscus
ENSRNOG00000018309Chd410097.355ENSPPRG00000001388-10097.355Panthera_pardus
ENSRNOG00000018309Chd410097.407ENSPTIG00000010979-10097.407Panthera_tigris_altaica
ENSRNOG00000018309Chd410097.251ENSPTRG00000004580CHD410097.251Pan_troglodytes
ENSRNOG00000018309Chd410097.150ENSPANG00000025409-10097.150Papio_anubis
ENSRNOG00000018309Chd49470.649ENSPKIG00000012023-7776.632Paramormyrops_kingsleyae
ENSRNOG00000018309Chd49878.780ENSPKIG00000008268chd4a9877.754Paramormyrops_kingsleyae
ENSRNOG00000018309Chd49988.636ENSPSIG00000015546-9988.785Pelodiscus_sinensis
ENSRNOG00000018309Chd49378.889ENSPMGG00000022981chd4a9778.643Periophthalmus_magnuspinnatus
ENSRNOG00000018309Chd48870.195ENSPMGG00000007681-9484.756Periophthalmus_magnuspinnatus
ENSRNOG00000018309Chd410095.643ENSPEMG00000010290Chd410095.643Peromyscus_maniculatus_bairdii
ENSRNOG00000018309Chd49296.665ENSPCIG00000001846-10096.665Phascolarctos_cinereus
ENSRNOG00000018309Chd49575.040ENSPFOG00000013889-9675.205Poecilia_formosa
ENSRNOG00000018309Chd48670.897ENSPFOG00000016981-9270.373Poecilia_formosa
ENSRNOG00000018309Chd48377.846ENSPFOG00000009089chd4a9875.733Poecilia_formosa
ENSRNOG00000018309Chd49776.408ENSPLAG00000012712chd4a9974.512Poecilia_latipinna
ENSRNOG00000018309Chd49675.875ENSPLAG00000004006-9478.108Poecilia_latipinna
ENSRNOG00000018309Chd49674.407ENSPMEG00000006064-9974.256Poecilia_mexicana
ENSRNOG00000018309Chd49578.794ENSPMEG00000009633chd4a9489.130Poecilia_mexicana
ENSRNOG00000018309Chd49370.822ENSPMEG00000015657-9370.377Poecilia_mexicana
ENSRNOG00000018309Chd48794.500ENSPREG00000001202chd4a9495.876Poecilia_reticulata
ENSRNOG00000018309Chd49070.108ENSPREG00000014285-7873.765Poecilia_reticulata
ENSRNOG00000018309Chd49675.534ENSPREG00000011359-9873.711Poecilia_reticulata
ENSRNOG00000018309Chd49994.543ENSPPYG00000004192-10094.543Pongo_abelii
ENSRNOG00000018309Chd474100.000ENSPCAG00000007120-85100.000Procavia_capensis
ENSRNOG00000018309Chd410096.680ENSPCOG00000018635-10096.680Propithecus_coquereli
ENSRNOG00000018309Chd49895.630ENSPVAG00000012574-10095.630Pteropus_vampyrus
ENSRNOG00000018309Chd49578.502ENSPNYG00000002663chd4a9378.416Pundamilia_nyererei
ENSRNOG00000018309Chd49874.631ENSPNYG00000023020-9874.051Pundamilia_nyererei
ENSRNOG00000018309Chd49679.309ENSPNAG00000009629chd4a9589.224Pygocentrus_nattereri
ENSRNOG00000018309Chd49577.336ENSPNAG00000011129-9876.832Pygocentrus_nattereri
ENSRNOG00000018309Chd49797.216ENSRBIG00000041491-10097.216Rhinopithecus_bieti
ENSRNOG00000018309Chd410097.251ENSRROG00000042446-10097.251Rhinopithecus_roxellana
ENSRNOG00000018309Chd410096.564ENSSBOG00000020782-10096.564Saimiri_boliviensis_boliviensis
ENSRNOG00000018309Chd49481.907ENSSHAG00000015079-9594.231Sarcophilus_harrisii
ENSRNOG00000018309Chd49878.031ENSSFOG00015002908chd49290.476Scleropages_formosus
ENSRNOG00000018309Chd49368.836ENSSMAG00000017926-9268.380Scophthalmus_maximus
ENSRNOG00000018309Chd49476.914ENSSMAG00000010969-9873.696Scophthalmus_maximus
ENSRNOG00000018309Chd47680.493ENSSMAG00000012594chd4a9976.502Scophthalmus_maximus
ENSRNOG00000018309Chd49279.542ENSSDUG00000002891chd4a9678.261Seriola_dumerili
ENSRNOG00000018309Chd49479.157ENSSDUG00000012051-9973.956Seriola_dumerili
ENSRNOG00000018309Chd49469.978ENSSLDG00000019750-9569.890Seriola_lalandi_dorsalis
ENSRNOG00000018309Chd49873.621ENSSLDG00000018645chd4a9775.390Seriola_lalandi_dorsalis
ENSRNOG00000018309Chd48886.345ENSSLDG00000023821-9487.234Seriola_lalandi_dorsalis
ENSRNOG00000018309Chd470100.000ENSSARG00000012988-73100.000Sorex_araneus
ENSRNOG00000018309Chd49988.653ENSSPUG00000015131-9989.337Sphenodon_punctatus
ENSRNOG00000018309Chd49371.437ENSSPAG00000018749-9370.944Stegastes_partitus
ENSRNOG00000018309Chd49577.916ENSSPAG00000013983chd4a9977.736Stegastes_partitus
ENSRNOG00000018309Chd410097.605ENSSSCG00000000697-10097.605Sus_scrofa
ENSRNOG00000018309Chd49989.953ENSTGUG00000013329-9990.052Taeniopygia_guttata
ENSRNOG00000018309Chd49576.413ENSTRUG00000007202-9976.102Takifugu_rubripes
ENSRNOG00000018309Chd49271.429ENSTRUG00000007623-8779.909Takifugu_rubripes
ENSRNOG00000018309Chd49766.184ENSTNIG00000004095-8880.527Tetraodon_nigroviridis
ENSRNOG00000018309Chd49576.108ENSTNIG00000008031-9975.806Tetraodon_nigroviridis
ENSRNOG00000018309Chd483100.000ENSTBEG00000011379-90100.000Tupaia_belangeri
ENSRNOG00000018309Chd49891.571ENSTTRG00000016102-10091.571Tursiops_truncatus
ENSRNOG00000018309Chd410095.910ENSUAMG00000016452-9997.196Ursus_americanus
ENSRNOG00000018309Chd410093.257ENSUMAG00000005336-9897.593Ursus_maritimus
ENSRNOG00000018309Chd410097.459ENSVVUG00000011414-10097.459Vulpes_vulpes
ENSRNOG00000018309Chd46486.795ENSXETG00000026410chd49992.352Xenopus_tropicalis
ENSRNOG00000018309Chd45282.987ENSXETG00000018961-10081.422Xenopus_tropicalis
ENSRNOG00000018309Chd49675.269ENSXCOG00000019269-9973.807Xiphophorus_couchianus
ENSRNOG00000018309Chd48581.498ENSXMAG00000014686-9381.279Xiphophorus_maculatus
ENSRNOG00000018309Chd49675.216ENSXMAG00000011263-9974.472Xiphophorus_maculatus
ENSRNOG00000018309Chd47683.142ENSXMAG00000001037chd4a9282.126Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II18456662.IMPProcess
GO:0001103RNA polymerase II repressing transcription factor binding-ISOFunction
GO:0003674molecular_function-NDFunction
GO:0005524ATP binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0005813centrosome-ISOComponent
GO:0008134transcription factor binding-IEAFunction
GO:0008134transcription factor binding-ISOFunction
GO:0016581NuRD complex-IEAComponent
GO:0016581NuRD complex-ISOComponent
GO:0032991protein-containing complex-ISOComponent
GO:0032993protein-DNA complex-IEAComponent
GO:0032993protein-DNA complex-ISOComponent
GO:0042826histone deacetylase binding-ISOFunction
GO:0046872metal ion binding-IEAFunction
GO:0072553terminal button organization24991957.IMPProcess

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