EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018396 (Gene tree)
Gene ID: 171552
Gene Symbol: Prpf18
Alias: KCRF|LOC171552|Pprf18
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 62104 bases
Position: chr17:77601877-77663980
Accession: 708550
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000024872	PRP4	PF08799.11	6.4e-13	1	1
ENSRNOP00000074228	PRP4	PF08799.11	6.8e-13	1	1
ENSRNOP00000024872	Prp18	PF02840.15	4.4e-63	1	1
ENSRNOP00000074228	Prp18	PF02840.15	3.4e-56	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000024872	-	5427	-	ENSRNOP00000024872	342 (aa)	-	Q9JKB8
ENSRNOT00000091554	-	2911	-	ENSRNOP00000074228	347 (aa)	-	A0A0G2K7J2

Gene Model

Click here to download ENSRNOG00000018396's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018396's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018396	Prpf18	100	98.830	ENSG00000165630	PRPF18	100	98.830	Homo_sapiens
ENSRNOG00000018396	Prpf18	100	85.088	ENSAPOG00000024177	prpf18	100	85.088	Acanthochromis_polyacanthus
ENSRNOG00000018396	Prpf18	100	98.246	ENSAMEG00000013591	-	100	98.246	Ailuropoda_melanoleuca
ENSRNOG00000018396	Prpf18	100	84.503	ENSACIG00000001186	prpf18	100	84.503	Amphilophus_citrinellus
ENSRNOG00000018396	Prpf18	98	85.075	ENSAOCG00000006572	prpf18	94	83.041	Amphiprion_ocellaris
ENSRNOG00000018396	Prpf18	100	85.380	ENSAPEG00000004564	prpf18	100	85.380	Amphiprion_percula
ENSRNOG00000018396	Prpf18	100	83.918	ENSATEG00000000303	prpf18	100	83.918	Anabas_testudineus
ENSRNOG00000018396	Prpf18	99	91.176	ENSAPLG00000003387	-	99	91.176	Anas_platyrhynchos
ENSRNOG00000018396	Prpf18	100	90.988	ENSACAG00000000818	-	100	90.988	Anolis_carolinensis
ENSRNOG00000018396	Prpf18	100	98.538	ENSANAG00000037445	-	100	98.538	Aotus_nancymaae
ENSRNOG00000018396	Prpf18	100	84.503	ENSACLG00000026296	prpf18	100	84.503	Astatotilapia_calliptera
ENSRNOG00000018396	Prpf18	100	84.000	ENSAMXG00000012848	prpf18	100	84.000	Astyanax_mexicanus
ENSRNOG00000018396	Prpf18	100	97.953	ENSBTAG00000017244	PRPF18	100	97.953	Bos_taurus
ENSRNOG00000018396	Prpf18	98	38.793	WBGene00009320	F32B6.3	97	38.793	Caenorhabditis_elegans
ENSRNOG00000018396	Prpf18	100	98.538	ENSCJAG00000009432	-	100	98.538	Callithrix_jacchus
ENSRNOG00000018396	Prpf18	100	98.246	ENSCAFG00000004735	-	100	98.246	Canis_familiaris
ENSRNOG00000018396	Prpf18	100	98.246	ENSCAFG00020007712	-	100	98.246	Canis_lupus_dingo
ENSRNOG00000018396	Prpf18	100	97.953	ENSCHIG00000000499	-	100	97.953	Capra_hircus
ENSRNOG00000018396	Prpf18	100	97.953	ENSTSYG00000003517	-	100	97.953	Carlito_syrichta
ENSRNOG00000018396	Prpf18	100	98.830	ENSCPOG00000021069	-	100	98.830	Cavia_porcellus
ENSRNOG00000018396	Prpf18	100	98.538	ENSCCAG00000036822	-	100	98.538	Cebus_capucinus
ENSRNOG00000018396	Prpf18	100	88.012	ENSCATG00000016633	-	100	88.012	Cercocebus_atys
ENSRNOG00000018396	Prpf18	100	98.246	ENSCLAG00000011770	-	100	98.246	Chinchilla_lanigera
ENSRNOG00000018396	Prpf18	100	96.296	ENSCSAG00000013109	-	100	96.296	Chlorocebus_sabaeus
ENSRNOG00000018396	Prpf18	100	88.764	ENSCPBG00000003100	-	100	89.326	Chrysemys_picta_bellii
ENSRNOG00000018396	Prpf18	99	54.412	ENSCING00000020481	-	97	54.412	Ciona_intestinalis
ENSRNOG00000018396	Prpf18	99	54.335	ENSCSAVG00000010546	-	99	54.179	Ciona_savignyi
ENSRNOG00000018396	Prpf18	100	98.830	ENSCANG00000034900	-	100	98.830	Colobus_angolensis_palliatus
ENSRNOG00000018396	Prpf18	100	99.415	ENSCGRG00001023665	Prpf18	100	99.415	Cricetulus_griseus_chok1gshd
ENSRNOG00000018396	Prpf18	100	99.415	ENSCGRG00000014690	Prpf18	100	99.415	Cricetulus_griseus_crigri
ENSRNOG00000018396	Prpf18	100	82.749	ENSCSEG00000005536	prpf18	99	82.749	Cynoglossus_semilaevis
ENSRNOG00000018396	Prpf18	100	83.918	ENSCVAG00000012401	prpf18	100	83.918	Cyprinodon_variegatus
ENSRNOG00000018396	Prpf18	100	84.795	ENSDARG00000058306	prpf18	100	84.795	Danio_rerio
ENSRNOG00000018396	Prpf18	100	97.661	ENSDNOG00000035607	-	100	97.661	Dasypus_novemcinctus
ENSRNOG00000018396	Prpf18	100	97.953	ENSDORG00000000858	Prpf18	100	97.953	Dipodomys_ordii
ENSRNOG00000018396	Prpf18	99	51.032	FBgn0027784	Prp18	98	50.737	Drosophila_melanogaster
ENSRNOG00000018396	Prpf18	100	86.550	ENSETEG00000015060	-	100	86.550	Echinops_telfairi
ENSRNOG00000018396	Prpf18	100	66.571	ENSEBUG00000016502	prpf18	99	65.706	Eptatretus_burgeri
ENSRNOG00000018396	Prpf18	100	98.538	ENSEASG00005019373	-	100	98.538	Equus_asinus_asinus
ENSRNOG00000018396	Prpf18	100	98.538	ENSECAG00000006997	PRPF18	100	98.538	Equus_caballus
ENSRNOG00000018396	Prpf18	94	60.923	ENSEEUG00000001171	-	100	62.658	Erinaceus_europaeus
ENSRNOG00000018396	Prpf18	100	82.507	ENSELUG00000022190	prpf18	100	82.507	Esox_lucius
ENSRNOG00000018396	Prpf18	100	97.953	ENSFCAG00000004436	-	100	97.953	Felis_catus
ENSRNOG00000018396	Prpf18	96	88.623	ENSFALG00000001912	-	100	88.623	Ficedula_albicollis
ENSRNOG00000018396	Prpf18	94	98.125	ENSFDAG00000014026	-	100	98.125	Fukomys_damarensis
ENSRNOG00000018396	Prpf18	99	64.058	ENSFDAG00000010713	-	97	64.058	Fukomys_damarensis
ENSRNOG00000018396	Prpf18	80	89.377	ENSFHEG00000020125	prpf18	98	89.513	Fundulus_heteroclitus
ENSRNOG00000018396	Prpf18	99	80.059	ENSGMOG00000012210	prpf18	99	80.059	Gadus_morhua
ENSRNOG00000018396	Prpf18	100	92.105	ENSGALG00000043593	-	100	92.105	Gallus_gallus
ENSRNOG00000018396	Prpf18	100	83.041	ENSGAFG00000006034	prpf18	100	83.041	Gambusia_affinis
ENSRNOG00000018396	Prpf18	100	82.164	ENSGACG00000012232	prpf18	100	82.164	Gasterosteus_aculeatus
ENSRNOG00000018396	Prpf18	100	92.398	ENSGAGG00000016878	-	100	92.398	Gopherus_agassizii
ENSRNOG00000018396	Prpf18	96	96.687	ENSGGOG00000025188	-	99	96.687	Gorilla_gorilla
ENSRNOG00000018396	Prpf18	100	84.503	ENSHBUG00000010264	prpf18	100	84.503	Haplochromis_burtoni
ENSRNOG00000018396	Prpf18	100	98.246	ENSHGLG00000018534	PRPF18	100	98.246	Heterocephalus_glaber_female
ENSRNOG00000018396	Prpf18	94	98.438	ENSHGLG00100012161	-	98	98.438	Heterocephalus_glaber_male
ENSRNOG00000018396	Prpf18	100	83.918	ENSHCOG00000015987	prpf18	100	83.918	Hippocampus_comes
ENSRNOG00000018396	Prpf18	100	82.153	ENSIPUG00000007432	prpf18	100	82.720	Ictalurus_punctatus
ENSRNOG00000018396	Prpf18	100	97.076	ENSSTOG00000008735	-	100	97.076	Ictidomys_tridecemlineatus
ENSRNOG00000018396	Prpf18	100	98.830	ENSJJAG00000024041	-	100	98.830	Jaculus_jaculus
ENSRNOG00000018396	Prpf18	100	71.758	ENSJJAG00000015191	-	100	71.758	Jaculus_jaculus
ENSRNOG00000018396	Prpf18	100	83.041	ENSKMAG00000012124	prpf18	100	83.041	Kryptolebias_marmoratus
ENSRNOG00000018396	Prpf18	99	83.136	ENSLBEG00000028466	prpf18	99	83.136	Labrus_bergylta
ENSRNOG00000018396	Prpf18	100	85.965	ENSLACG00000009885	prpf18	100	85.965	Latimeria_chalumnae
ENSRNOG00000018396	Prpf18	100	90.643	ENSLOCG00000016736	prpf18	100	90.643	Lepisosteus_oculatus
ENSRNOG00000018396	Prpf18	100	98.830	ENSLAFG00000007753	-	100	98.830	Loxodonta_africana
ENSRNOG00000018396	Prpf18	100	98.830	ENSMFAG00000000540	-	100	98.830	Macaca_fascicularis
ENSRNOG00000018396	Prpf18	100	98.830	ENSMMUG00000015071	PRPF18	100	98.830	Macaca_mulatta
ENSRNOG00000018396	Prpf18	100	98.830	ENSMNEG00000024679	-	100	98.830	Macaca_nemestrina
ENSRNOG00000018396	Prpf18	100	83.626	ENSMLEG00000031715	-	91	94.891	Mandrillus_leucophaeus
ENSRNOG00000018396	Prpf18	100	83.041	ENSMAMG00000006610	prpf18	100	83.041	Mastacembelus_armatus
ENSRNOG00000018396	Prpf18	100	84.503	ENSMZEG00005019392	prpf18	100	84.503	Maylandia_zebra
ENSRNOG00000018396	Prpf18	100	92.105	ENSMGAG00000005023	-	100	92.105	Meleagris_gallopavo
ENSRNOG00000018396	Prpf18	100	98.538	ENSMICG00000006572	-	100	98.538	Microcebus_murinus
ENSRNOG00000018396	Prpf18	100	98.830	ENSMOCG00000021468	Prpf18	100	98.830	Microtus_ochrogaster
ENSRNOG00000018396	Prpf18	100	83.626	ENSMMOG00000013012	prpf18	100	83.626	Mola_mola
ENSRNOG00000018396	Prpf18	94	95.385	ENSMODG00000016902	-	91	95.385	Monodelphis_domestica
ENSRNOG00000018396	Prpf18	100	85.673	ENSMODG00000024043	-	100	85.673	Monodelphis_domestica
ENSRNOG00000018396	Prpf18	100	77.937	ENSMALG00000005486	prpf18	100	78.223	Monopterus_albus
ENSRNOG00000018396	Prpf18	100	98.830	MGP_CAROLIEiJ_G0023143	Prpf18	100	98.830	Mus_caroli
ENSRNOG00000018396	Prpf18	100	98.538	ENSMUSG00000039449	Prpf18	100	98.630	Mus_musculus
ENSRNOG00000018396	Prpf18	100	98.538	MGP_PahariEiJ_G0019203	Prpf18	100	98.630	Mus_pahari
ENSRNOG00000018396	Prpf18	100	98.246	MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	Mus_spretus
ENSRNOG00000018396	Prpf18	100	97.953	ENSMPUG00000000938	-	100	97.953	Mustela_putorius_furo
ENSRNOG00000018396	Prpf18	100	98.538	ENSMLUG00000009200	-	100	98.538	Myotis_lucifugus
ENSRNOG00000018396	Prpf18	100	98.246	ENSNGAG00000012500	-	100	98.246	Nannospalax_galili
ENSRNOG00000018396	Prpf18	67	91.739	ENSNGAG00000023550	-	82	91.739	Nannospalax_galili
ENSRNOG00000018396	Prpf18	100	84.503	ENSNBRG00000001778	prpf18	100	84.503	Neolamprologus_brichardi
ENSRNOG00000018396	Prpf18	100	98.830	ENSNLEG00000012186	-	100	98.830	Nomascus_leucogenys
ENSRNOG00000018396	Prpf18	100	65.205	ENSMEUG00000005032	-	100	65.205	Notamacropus_eugenii
ENSRNOG00000018396	Prpf18	77	81.132	ENSOPRG00000002153	-	100	81.132	Ochotona_princeps
ENSRNOG00000018396	Prpf18	100	98.246	ENSODEG00000003770	-	100	98.246	Octodon_degus
ENSRNOG00000018396	Prpf18	98	83.881	ENSONIG00000014854	prpf18	96	83.881	Oreochromis_niloticus
ENSRNOG00000018396	Prpf18	100	94.444	ENSOANG00000015404	-	100	94.444	Ornithorhynchus_anatinus
ENSRNOG00000018396	Prpf18	100	98.538	ENSOCUG00000027756	-	100	94.444	Oryctolagus_cuniculus
ENSRNOG00000018396	Prpf18	100	82.906	ENSORLG00000010293	prpf18	100	82.906	Oryzias_latipes
ENSRNOG00000018396	Prpf18	100	84.503	ENSORLG00020001530	prpf18	100	84.503	Oryzias_latipes_hni
ENSRNOG00000018396	Prpf18	100	84.211	ENSORLG00015013705	prpf18	100	84.211	Oryzias_latipes_hsok
ENSRNOG00000018396	Prpf18	100	85.088	ENSOMEG00000009167	prpf18	100	85.088	Oryzias_melastigma
ENSRNOG00000018396	Prpf18	100	97.661	ENSOGAG00000007294	-	100	97.661	Otolemur_garnettii
ENSRNOG00000018396	Prpf18	100	95.442	ENSOARG00000006243	-	100	95.442	Ovis_aries
ENSRNOG00000018396	Prpf18	100	98.830	ENSPPAG00000041959	-	100	98.830	Pan_paniscus
ENSRNOG00000018396	Prpf18	100	97.953	ENSPPRG00000000107	-	100	97.953	Panthera_pardus
ENSRNOG00000018396	Prpf18	100	97.661	ENSPTIG00000021094	-	100	97.661	Panthera_tigris_altaica
ENSRNOG00000018396	Prpf18	100	98.830	ENSPTRG00000002306	PRPF18	100	98.830	Pan_troglodytes
ENSRNOG00000018396	Prpf18	100	98.538	ENSPANG00000023346	-	100	98.538	Papio_anubis
ENSRNOG00000018396	Prpf18	87	98.113	ENSPKIG00000014128	prpf18	96	82.051	Paramormyrops_kingsleyae
ENSRNOG00000018396	Prpf18	100	92.398	ENSPSIG00000016064	-	100	92.398	Pelodiscus_sinensis
ENSRNOG00000018396	Prpf18	100	78.655	ENSPMGG00000016486	prpf18	100	78.655	Periophthalmus_magnuspinnatus
ENSRNOG00000018396	Prpf18	100	99.123	ENSPEMG00000013704	Prpf18	100	99.123	Peromyscus_maniculatus_bairdii
ENSRNOG00000018396	Prpf18	100	74.277	ENSPMAG00000000204	prpf18	100	74.277	Petromyzon_marinus
ENSRNOG00000018396	Prpf18	94	96.000	ENSPCIG00000012963	-	99	96.519	Phascolarctos_cinereus
ENSRNOG00000018396	Prpf18	100	82.000	ENSPFOG00000017611	prpf18	100	82.000	Poecilia_formosa
ENSRNOG00000018396	Prpf18	100	83.333	ENSPLAG00000000369	prpf18	100	83.333	Poecilia_latipinna
ENSRNOG00000018396	Prpf18	100	83.333	ENSPMEG00000005183	prpf18	100	83.333	Poecilia_mexicana
ENSRNOG00000018396	Prpf18	100	82.749	ENSPREG00000015232	prpf18	100	82.749	Poecilia_reticulata
ENSRNOG00000018396	Prpf18	100	98.538	ENSPPYG00000002101	PRPF18	100	98.538	Pongo_abelii
ENSRNOG00000018396	Prpf18	100	79.825	ENSPCAG00000010833	-	100	79.825	Procavia_capensis
ENSRNOG00000018396	Prpf18	100	91.228	ENSPCOG00000013057	-	100	91.228	Propithecus_coquereli
ENSRNOG00000018396	Prpf18	100	60.526	ENSPVAG00000002947	-	100	60.526	Pteropus_vampyrus
ENSRNOG00000018396	Prpf18	100	84.503	ENSPNYG00000003554	prpf18	100	84.503	Pundamilia_nyererei
ENSRNOG00000018396	Prpf18	100	85.185	ENSPNAG00000023151	prpf18	100	85.185	Pygocentrus_nattereri
ENSRNOG00000018396	Prpf18	100	98.538	ENSRBIG00000028028	-	100	98.538	Rhinopithecus_bieti
ENSRNOG00000018396	Prpf18	100	98.830	ENSRROG00000040695	-	100	98.830	Rhinopithecus_roxellana
ENSRNOG00000018396	Prpf18	100	98.538	ENSSBOG00000034482	-	100	98.538	Saimiri_boliviensis_boliviensis
ENSRNOG00000018396	Prpf18	100	76.901	ENSSHAG00000009669	-	100	76.901	Sarcophilus_harrisii
ENSRNOG00000018396	Prpf18	100	96.491	ENSSHAG00000016463	-	100	96.491	Sarcophilus_harrisii
ENSRNOG00000018396	Prpf18	98	81.449	ENSSFOG00015022118	prpf18	100	76.657	Scleropages_formosus
ENSRNOG00000018396	Prpf18	77	44.528	ENSSFOG00015021154	-	89	48.927	Scleropages_formosus
ENSRNOG00000018396	Prpf18	100	83.041	ENSSMAG00000005308	prpf18	100	83.041	Scophthalmus_maximus
ENSRNOG00000018396	Prpf18	100	84.795	ENSSDUG00000015428	prpf18	100	84.795	Seriola_dumerili
ENSRNOG00000018396	Prpf18	100	84.795	ENSSLDG00000023989	prpf18	100	84.795	Seriola_lalandi_dorsalis
ENSRNOG00000018396	Prpf18	100	67.836	ENSSARG00000005307	-	100	67.836	Sorex_araneus
ENSRNOG00000018396	Prpf18	100	92.982	ENSSPUG00000002619	-	100	92.982	Sphenodon_punctatus
ENSRNOG00000018396	Prpf18	100	84.211	ENSSPAG00000019502	prpf18	100	84.211	Stegastes_partitus
ENSRNOG00000018396	Prpf18	100	98.246	ENSSSCG00000026354	-	100	98.246	Sus_scrofa
ENSRNOG00000018396	Prpf18	100	91.813	ENSTGUG00000002286	-	100	91.813	Taeniopygia_guttata
ENSRNOG00000018396	Prpf18	100	82.164	ENSTRUG00000011278	prpf18	100	82.164	Takifugu_rubripes
ENSRNOG00000018396	Prpf18	100	81.871	ENSTNIG00000000911	prpf18	100	81.871	Tetraodon_nigroviridis
ENSRNOG00000018396	Prpf18	79	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSRNOG00000018396	Prpf18	100	98.538	ENSTTRG00000011117	PRPF18	100	98.538	Tursiops_truncatus
ENSRNOG00000018396	Prpf18	95	95.077	ENSUAMG00000001815	-	94	95.077	Ursus_americanus
ENSRNOG00000018396	Prpf18	100	93.275	ENSUMAG00000012329	-	100	93.275	Ursus_maritimus
ENSRNOG00000018396	Prpf18	100	92.690	ENSVPAG00000011486	-	100	92.690	Vicugna_pacos
ENSRNOG00000018396	Prpf18	100	98.246	ENSVVUG00000005453	-	100	98.246	Vulpes_vulpes
ENSRNOG00000018396	Prpf18	100	80.000	ENSXETG00000024057	prpf18	100	80.000	Xenopus_tropicalis
ENSRNOG00000018396	Prpf18	100	82.558	ENSXCOG00000020414	prpf18	100	82.558	Xiphophorus_couchianus
ENSRNOG00000018396	Prpf18	100	83.041	ENSXMAG00000004713	prpf18	91	83.041	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000350	generation of catalytic spliceosome for second transesterification step	21873635.	IBA	Process
GO:0000386	second spliceosomal transesterification activity	21873635.	IBA	Function
GO:0003674	molecular_function	-	ND	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0008380	RNA splicing	-	IEA	Process
GO:0016020	membrane	10924366.	IDA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0032269	negative regulation of cellular protein metabolic process	10924366.	IDA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071021	U2-type post-spliceosomal complex	21873635.	IBA	Component
GO:0071048	nuclear retention of unspliced pre-mRNA at the site of transcription	21873635.	IBA	Process