EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018550 (Gene tree)
Gene ID: 360563
Gene Symbol: Ncbp3
Alias: LOC360563|RGD1308139
Full Name: nuclear cap binding subunit 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 29714 bases
Position: chr10:59613398-59643111
Accession: 1308139
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000025554	NCBP3	PF10309.9	8.5e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000025553	-	2880	-	ENSRNOP00000025554	615 (aa)	-	D3ZXL5

Gene Model

Click here to download ENSRNOG00000018550's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018550's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018550	Ncbp3	98	93.234	ENSG00000074356	NCBP3	98	93.234	Homo_sapiens
ENSRNOG00000018550	Ncbp3	99	57.457	ENSAPOG00000020809	ncbp3	98	58.054	Acanthochromis_polyacanthus
ENSRNOG00000018550	Ncbp3	98	88.780	ENSAMEG00000009372	NCBP3	98	89.106	Ailuropoda_melanoleuca
ENSRNOG00000018550	Ncbp3	98	53.883	ENSACIG00000024257	ncbp3	98	55.663	Amphilophus_citrinellus
ENSRNOG00000018550	Ncbp3	99	57.075	ENSAPEG00000020857	ncbp3	98	57.987	Amphiprion_percula
ENSRNOG00000018550	Ncbp3	98	56.467	ENSATEG00000010801	ncbp3	98	57.165	Anabas_testudineus
ENSRNOG00000018550	Ncbp3	90	79.335	ENSAPLG00000007373	NCBP3	98	79.391	Anas_platyrhynchos
ENSRNOG00000018550	Ncbp3	99	66.721	ENSANAG00000020550	-	97	64.784	Aotus_nancymaae
ENSRNOG00000018550	Ncbp3	98	86.469	ENSANAG00000024918	-	98	87.171	Aotus_nancymaae
ENSRNOG00000018550	Ncbp3	99	57.256	ENSACLG00000000455	ncbp3	98	57.576	Astatotilapia_calliptera
ENSRNOG00000018550	Ncbp3	98	55.655	ENSAMXG00000005968	ncbp3	98	57.418	Astyanax_mexicanus
ENSRNOG00000018550	Ncbp3	98	92.013	ENSBTAG00000016621	NCBP3	98	91.847	Bos_taurus
ENSRNOG00000018550	Ncbp3	97	91.792	ENSCAFG00000019371	NCBP3	95	91.960	Canis_familiaris
ENSRNOG00000018550	Ncbp3	97	91.792	ENSCAFG00020008143	NCBP3	95	91.960	Canis_lupus_dingo
ENSRNOG00000018550	Ncbp3	100	92.683	ENSCHIG00000009002	NCBP3	98	92.346	Capra_hircus
ENSRNOG00000018550	Ncbp3	98	93.058	ENSTSYG00000008184	NCBP3	98	93.223	Carlito_syrichta
ENSRNOG00000018550	Ncbp3	88	91.971	ENSCAPG00000016045	NCBP3	95	92.153	Cavia_aperea
ENSRNOG00000018550	Ncbp3	98	92.397	ENSCPOG00000015529	NCBP3	98	92.562	Cavia_porcellus
ENSRNOG00000018550	Ncbp3	98	92.574	ENSCCAG00000021154	NCBP3	98	92.574	Cebus_capucinus
ENSRNOG00000018550	Ncbp3	97	92.512	ENSCATG00000013041	NCBP3	95	92.679	Cercocebus_atys
ENSRNOG00000018550	Ncbp3	98	93.677	ENSCLAG00000012229	NCBP3	98	93.844	Chinchilla_lanigera
ENSRNOG00000018550	Ncbp3	98	89.439	ENSCSAG00000013543	NCBP3	98	89.109	Chlorocebus_sabaeus
ENSRNOG00000018550	Ncbp3	98	89.701	ENSCHOG00000012323	NCBP3	98	89.369	Choloepus_hoffmanni
ENSRNOG00000018550	Ncbp3	100	78.803	ENSCPBG00000014824	NCBP3	97	80.734	Chrysemys_picta_bellii
ENSRNOG00000018550	Ncbp3	98	85.289	ENSCANG00000033561	NCBP3	98	85.455	Colobus_angolensis_palliatus
ENSRNOG00000018550	Ncbp3	100	97.078	ENSCGRG00001018538	Ncbp3	100	97.078	Cricetulus_griseus_chok1gshd
ENSRNOG00000018550	Ncbp3	90	97.112	ENSCGRG00000015075	Ncbp3	100	97.112	Cricetulus_griseus_crigri
ENSRNOG00000018550	Ncbp3	99	57.746	ENSCSEG00000006375	ncbp3	98	57.484	Cynoglossus_semilaevis
ENSRNOG00000018550	Ncbp3	99	48.542	ENSCVAG00000020563	ncbp3	98	52.108	Cyprinodon_variegatus
ENSRNOG00000018550	Ncbp3	98	52.838	ENSDARG00000044597	ncbp3	98	54.876	Danio_rerio
ENSRNOG00000018550	Ncbp3	97	91.639	ENSDNOG00000006490	NCBP3	95	91.639	Dasypus_novemcinctus
ENSRNOG00000018550	Ncbp3	100	92.045	ENSDORG00000010141	Ncbp3	98	92.193	Dipodomys_ordii
ENSRNOG00000018550	Ncbp3	93	40.000	ENSEBUG00000004541	ncbp3	95	40.464	Eptatretus_burgeri
ENSRNOG00000018550	Ncbp3	97	93.467	ENSEASG00005013399	NCBP3	95	93.467	Equus_asinus_asinus
ENSRNOG00000018550	Ncbp3	97	93.635	ENSECAG00000008444	NCBP3	95	93.635	Equus_caballus
ENSRNOG00000018550	Ncbp3	98	73.500	ENSEEUG00000008573	NCBP3	96	72.232	Erinaceus_europaeus
ENSRNOG00000018550	Ncbp3	100	54.077	ENSELUG00000009182	ncbp3	98	54.506	Esox_lucius
ENSRNOG00000018550	Ncbp3	98	93.178	ENSFCAG00000007929	NCBP3	98	93.178	Felis_catus
ENSRNOG00000018550	Ncbp3	92	81.481	ENSFALG00000006704	NCBP3	98	81.593	Ficedula_albicollis
ENSRNOG00000018550	Ncbp3	98	94.676	ENSFDAG00000013355	NCBP3	98	94.676	Fukomys_damarensis
ENSRNOG00000018550	Ncbp3	98	50.300	ENSFHEG00000005607	ncbp3	98	50.533	Fundulus_heteroclitus
ENSRNOG00000018550	Ncbp3	73	59.344	ENSGMOG00000001007	ncbp3	77	59.344	Gadus_morhua
ENSRNOG00000018550	Ncbp3	100	77.670	ENSGALG00000002653	NCBP3	98	79.504	Gallus_gallus
ENSRNOG00000018550	Ncbp3	83	56.192	ENSGAFG00000008912	ncbp3	81	57.593	Gambusia_affinis
ENSRNOG00000018550	Ncbp3	99	54.405	ENSGACG00000020902	ncbp3	97	53.810	Gasterosteus_aculeatus
ENSRNOG00000018550	Ncbp3	100	79.450	ENSGAGG00000014490	NCBP3	98	78.852	Gopherus_agassizii
ENSRNOG00000018550	Ncbp3	98	93.223	ENSGGOG00000007496	NCBP3	98	93.223	Gorilla_gorilla
ENSRNOG00000018550	Ncbp3	98	93.344	ENSHGLG00000015839	NCBP3	98	93.511	Heterocephalus_glaber_female
ENSRNOG00000018550	Ncbp3	98	93.344	ENSHGLG00100007256	NCBP3	98	93.511	Heterocephalus_glaber_male
ENSRNOG00000018550	Ncbp3	99	51.537	ENSHCOG00000004161	ncbp3	98	52.695	Hippocampus_comes
ENSRNOG00000018550	Ncbp3	98	58.293	ENSIPUG00000024397	ncbp3	98	60.096	Ictalurus_punctatus
ENSRNOG00000018550	Ncbp3	74	94.273	ENSSTOG00000002101	NCBP3	100	94.714	Ictidomys_tridecemlineatus
ENSRNOG00000018550	Ncbp3	98	83.582	ENSJJAG00000000634	Ncbp3	98	83.416	Jaculus_jaculus
ENSRNOG00000018550	Ncbp3	98	52.847	ENSKMAG00000001932	ncbp3	98	53.382	Kryptolebias_marmoratus
ENSRNOG00000018550	Ncbp3	98	52.298	ENSLBEG00000006036	ncbp3	98	53.081	Labrus_bergylta
ENSRNOG00000018550	Ncbp3	98	52.129	ENSLBEG00000001558	-	98	51.475	Labrus_bergylta
ENSRNOG00000018550	Ncbp3	98	62.890	ENSLACG00000018791	NCBP3	98	62.357	Latimeria_chalumnae
ENSRNOG00000018550	Ncbp3	98	61.679	ENSLOCG00000006706	ncbp3	98	61.420	Lepisosteus_oculatus
ENSRNOG00000018550	Ncbp3	98	92.550	ENSLAFG00000002067	NCBP3	98	92.550	Loxodonta_africana
ENSRNOG00000018550	Ncbp3	98	93.035	ENSMFAG00000024176	NCBP3	98	93.532	Macaca_fascicularis
ENSRNOG00000018550	Ncbp3	98	93.035	ENSMMUG00000008556	NCBP3	98	93.532	Macaca_mulatta
ENSRNOG00000018550	Ncbp3	97	92.487	ENSMNEG00000041374	NCBP3	95	92.988	Macaca_nemestrina
ENSRNOG00000018550	Ncbp3	88	93.199	ENSMLEG00000034703	NCBP3	97	93.382	Mandrillus_leucophaeus
ENSRNOG00000018550	Ncbp3	99	53.286	ENSMAMG00000022461	ncbp3	98	53.846	Mastacembelus_armatus
ENSRNOG00000018550	Ncbp3	99	56.556	ENSMZEG00005027802	ncbp3	98	56.869	Maylandia_zebra
ENSRNOG00000018550	Ncbp3	94	79.174	ENSMGAG00000004685	NCBP3	98	80.952	Meleagris_gallopavo
ENSRNOG00000018550	Ncbp3	98	87.107	ENSMICG00000015798	NCBP3	98	87.273	Microcebus_murinus
ENSRNOG00000018550	Ncbp3	100	96.440	ENSMOCG00000016446	Ncbp3	100	96.440	Microtus_ochrogaster
ENSRNOG00000018550	Ncbp3	98	54.430	ENSMMOG00000012577	ncbp3	98	54.660	Mola_mola
ENSRNOG00000018550	Ncbp3	98	53.354	ENSMALG00000009173	ncbp3	98	53.704	Monopterus_albus
ENSRNOG00000018550	Ncbp3	100	97.561	MGP_CAROLIEiJ_G0016684	Ncbp3	100	97.561	Mus_caroli
ENSRNOG00000018550	Ncbp3	100	97.886	ENSMUSG00000020783	Ncbp3	100	97.886	Mus_musculus
ENSRNOG00000018550	Ncbp3	100	97.236	MGP_PahariEiJ_G0017817	Ncbp3	100	97.236	Mus_pahari
ENSRNOG00000018550	Ncbp3	100	97.886	MGP_SPRETEiJ_G0017521	Ncbp3	100	97.886	Mus_spretus
ENSRNOG00000018550	Ncbp3	97	92.462	ENSMPUG00000012357	NCBP3	95	92.630	Mustela_putorius_furo
ENSRNOG00000018550	Ncbp3	98	91.348	ENSMLUG00000017060	NCBP3	98	91.514	Myotis_lucifugus
ENSRNOG00000018550	Ncbp3	98	95.674	ENSNGAG00000020321	Ncbp3	98	95.674	Nannospalax_galili
ENSRNOG00000018550	Ncbp3	83	55.848	ENSNBRG00000017354	ncbp3	96	56.176	Neolamprologus_brichardi
ENSRNOG00000018550	Ncbp3	98	87.583	ENSNLEG00000017279	NCBP3	98	87.748	Nomascus_leucogenys
ENSRNOG00000018550	Ncbp3	67	81.967	ENSMEUG00000015701	-	76	81.967	Notamacropus_eugenii
ENSRNOG00000018550	Ncbp3	98	90.183	ENSOPRG00000016925	NCBP3	98	89.850	Ochotona_princeps
ENSRNOG00000018550	Ncbp3	98	94.842	ENSODEG00000016617	NCBP3	98	94.842	Octodon_degus
ENSRNOG00000018550	Ncbp3	99	52.086	ENSONIG00000007434	ncbp3	98	52.632	Oreochromis_niloticus
ENSRNOG00000018550	Ncbp3	100	77.258	ENSOANG00000010109	NCBP3	98	77.393	Ornithorhynchus_anatinus
ENSRNOG00000018550	Ncbp3	97	92.630	ENSOCUG00000008045	NCBP3	95	92.797	Oryctolagus_cuniculus
ENSRNOG00000018550	Ncbp3	98	54.490	ENSORLG00000013703	ncbp3	98	54.211	Oryzias_latipes
ENSRNOG00000018550	Ncbp3	98	54.255	ENSORLG00020011764	ncbp3	98	54.128	Oryzias_latipes_hni
ENSRNOG00000018550	Ncbp3	98	54.173	ENSORLG00015018733	ncbp3	98	53.740	Oryzias_latipes_hsok
ENSRNOG00000018550	Ncbp3	98	54.009	ENSOMEG00000017858	ncbp3	98	55.521	Oryzias_melastigma
ENSRNOG00000018550	Ncbp3	98	92.409	ENSOGAG00000008803	NCBP3	98	92.574	Otolemur_garnettii
ENSRNOG00000018550	Ncbp3	81	91.816	ENSOARG00000017750	NCBP3	97	92.197	Ovis_aries
ENSRNOG00000018550	Ncbp3	98	93.564	ENSPPAG00000030530	NCBP3	98	93.564	Pan_paniscus
ENSRNOG00000018550	Ncbp3	98	92.525	ENSPPRG00000022474	NCBP3	98	92.857	Panthera_pardus
ENSRNOG00000018550	Ncbp3	90	91.304	ENSPTIG00000009607	NCBP3	90	91.667	Panthera_tigris_altaica
ENSRNOG00000018550	Ncbp3	98	93.245	ENSPTRG00000008578	NCBP3	98	93.245	Pan_troglodytes
ENSRNOG00000018550	Ncbp3	98	93.058	ENSPANG00000024364	NCBP3	98	93.223	Papio_anubis
ENSRNOG00000018550	Ncbp3	90	60.477	ENSPKIG00000008466	ncbp3	87	60.244	Paramormyrops_kingsleyae
ENSRNOG00000018550	Ncbp3	81	76.190	ENSPSIG00000013732	NCBP3	96	75.740	Pelodiscus_sinensis
ENSRNOG00000018550	Ncbp3	99	50.977	ENSPMGG00000003344	ncbp3	98	52.006	Periophthalmus_magnuspinnatus
ENSRNOG00000018550	Ncbp3	100	96.753	ENSPEMG00000007746	Ncbp3	100	96.753	Peromyscus_maniculatus_bairdii
ENSRNOG00000018550	Ncbp3	100	78.041	ENSPCIG00000008605	NCBP3	98	78.491	Phascolarctos_cinereus
ENSRNOG00000018550	Ncbp3	88	53.311	ENSPFOG00000000721	ncbp3	96	53.974	Poecilia_formosa
ENSRNOG00000018550	Ncbp3	98	52.632	ENSPLAG00000015399	ncbp3	98	54.423	Poecilia_latipinna
ENSRNOG00000018550	Ncbp3	98	52.632	ENSPMEG00000000896	ncbp3	98	54.204	Poecilia_mexicana
ENSRNOG00000018550	Ncbp3	98	52.941	ENSPREG00000001681	ncbp3	98	54.066	Poecilia_reticulata
ENSRNOG00000018550	Ncbp3	97	92.691	ENSPPYG00000007823	NCBP3	95	92.691	Pongo_abelii
ENSRNOG00000018550	Ncbp3	100	87.480	ENSPCAG00000012614	NCBP3	98	87.687	Procavia_capensis
ENSRNOG00000018550	Ncbp3	98	92.893	ENSPCOG00000016793	NCBP3	98	93.058	Propithecus_coquereli
ENSRNOG00000018550	Ncbp3	96	86.341	ENSPVAG00000012746	NCBP3	98	86.509	Pteropus_vampyrus
ENSRNOG00000018550	Ncbp3	99	52.807	ENSPNYG00000022677	ncbp3	98	52.932	Pundamilia_nyererei
ENSRNOG00000018550	Ncbp3	98	55.835	ENSPNAG00000003219	ncbp3	98	56.912	Pygocentrus_nattereri
ENSRNOG00000018550	Ncbp3	98	92.893	ENSRBIG00000033247	NCBP3	98	93.058	Rhinopithecus_bieti
ENSRNOG00000018550	Ncbp3	98	92.893	ENSRROG00000043833	NCBP3	99	92.654	Rhinopithecus_roxellana
ENSRNOG00000018550	Ncbp3	98	92.550	ENSSBOG00000023178	NCBP3	98	92.715	Saimiri_boliviensis_boliviensis
ENSRNOG00000018550	Ncbp3	81	77.273	ENSSHAG00000003466	NCBP3	97	77.439	Sarcophilus_harrisii
ENSRNOG00000018550	Ncbp3	100	57.609	ENSSFOG00015005808	ncbp3	98	55.962	Scleropages_formosus
ENSRNOG00000018550	Ncbp3	98	49.928	ENSSMAG00000010917	ncbp3	98	50.361	Scophthalmus_maximus
ENSRNOG00000018550	Ncbp3	99	57.837	ENSSDUG00000023402	ncbp3	98	58.013	Seriola_dumerili
ENSRNOG00000018550	Ncbp3	99	45.098	ENSSLDG00000000742	ncbp3	98	46.330	Seriola_lalandi_dorsalis
ENSRNOG00000018550	Ncbp3	98	83.085	ENSSARG00000006634	NCBP3	98	83.582	Sorex_araneus
ENSRNOG00000018550	Ncbp3	100	76.312	ENSSPUG00000002240	NCBP3	98	75.122	Sphenodon_punctatus
ENSRNOG00000018550	Ncbp3	99	52.340	ENSSPAG00000011223	ncbp3	98	53.017	Stegastes_partitus
ENSRNOG00000018550	Ncbp3	98	93.178	ENSSSCG00000017870	NCBP3	98	93.178	Sus_scrofa
ENSRNOG00000018550	Ncbp3	98	79.901	ENSTGUG00000005396	NCBP3	98	81.157	Taeniopygia_guttata
ENSRNOG00000018550	Ncbp3	99	54.003	ENSTRUG00000003769	ncbp3	98	55.538	Takifugu_rubripes
ENSRNOG00000018550	Ncbp3	99	54.938	ENSTNIG00000004776	ncbp3	98	55.296	Tetraodon_nigroviridis
ENSRNOG00000018550	Ncbp3	98	88.060	ENSTBEG00000006308	NCBP3	98	87.562	Tupaia_belangeri
ENSRNOG00000018550	Ncbp3	98	86.522	ENSTTRG00000005845	NCBP3	98	86.522	Tursiops_truncatus
ENSRNOG00000018550	Ncbp3	98	89.627	ENSUAMG00000014043	NCBP3	98	89.789	Ursus_americanus
ENSRNOG00000018550	Ncbp3	88	91.667	ENSUMAG00000007519	NCBP3	96	92.037	Ursus_maritimus
ENSRNOG00000018550	Ncbp3	97	87.793	ENSVVUG00000026079	NCBP3	95	88.127	Vulpes_vulpes
ENSRNOG00000018550	Ncbp3	100	61.807	ENSXETG00000012965	ncbp3	98	62.662	Xenopus_tropicalis
ENSRNOG00000018550	Ncbp3	99	50.610	ENSXCOG00000018393	ncbp3	99	51.227	Xiphophorus_couchianus
ENSRNOG00000018550	Ncbp3	98	52.036	ENSXMAG00000006849	ncbp3	98	53.163	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000339	RNA cap binding	-	ISO	Function
GO:0000340	RNA 7-methylguanosine cap binding	-	IEA	Function
GO:0000340	RNA 7-methylguanosine cap binding	-	ISO	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0051607	defense response to virus	-	IEA	Process
GO:0051607	defense response to virus	-	ISO	Process