EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018704 (Gene tree)
Gene ID: 64896
Gene Symbol: Nolc1
Alias: Nopp140
Full Name: nucleolar and coiled-body phosphoprotein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 10711 bases
Position: chr1:265829108-265839818
Accession: 621578
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000025788	SRP40_C	PF05022.12	2.3e-28	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000025791	-	3610	XM_006231560	ENSRNOP00000025788	704 (aa)	XP_006231622	P41777

Gene Model

Click here to download ENSRNOG00000018704's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018704's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018704	Nolc1	100	70.605	ENSG00000166197	NOLC1	93	88.372	Homo_sapiens
ENSRNOG00000018704	Nolc1	100	74.480	ENSAMEG00000017687	NOLC1	100	73.167	Ailuropoda_melanoleuca
ENSRNOG00000018704	Nolc1	100	69.371	ENSBTAG00000007435	NOLC1	100	70.070	Bos_taurus
ENSRNOG00000018704	Nolc1	100	72.969	ENSCAFG00000010062	NOLC1	67	73.333	Canis_familiaris
ENSRNOG00000018704	Nolc1	100	72.370	ENSCAFG00020010146	NOLC1	67	73.486	Canis_lupus_dingo
ENSRNOG00000018704	Nolc1	100	63.923	ENSCHIG00000016755	NOLC1	65	67.152	Capra_hircus
ENSRNOG00000018704	Nolc1	94	69.912	ENSTSYG00000011322	NOLC1	100	67.799	Carlito_syrichta
ENSRNOG00000018704	Nolc1	62	69.501	ENSCAPG00000008758	-	80	86.000	Cavia_aperea
ENSRNOG00000018704	Nolc1	99	68.156	ENSCPOG00000004504	NOLC1	64	71.458	Cavia_porcellus
ENSRNOG00000018704	Nolc1	100	69.456	ENSCCAG00000031293	NOLC1	100	68.428	Cebus_capucinus
ENSRNOG00000018704	Nolc1	100	72.765	ENSCATG00000020949	NOLC1	66	75.000	Cercocebus_atys
ENSRNOG00000018704	Nolc1	50	89.362	ENSCHOG00000006588	-	50	91.429	Choloepus_hoffmanni
ENSRNOG00000018704	Nolc1	100	67.077	ENSCANG00000032550	NOLC1	100	69.464	Colobus_angolensis_palliatus
ENSRNOG00000018704	Nolc1	100	76.238	ENSCGRG00001009806	Nolc1	67	74.004	Cricetulus_griseus_chok1gshd
ENSRNOG00000018704	Nolc1	100	76.238	ENSCGRG00000005530	Nolc1	67	74.004	Cricetulus_griseus_crigri
ENSRNOG00000018704	Nolc1	100	91.803	ENSDNOG00000025256	NOLC1	63	87.597	Dasypus_novemcinctus
ENSRNOG00000018704	Nolc1	100	72.996	ENSDORG00000001056	Nolc1	100	72.293	Dipodomys_ordii
ENSRNOG00000018704	Nolc1	51	61.580	ENSETEG00000019260	NOLC1	57	60.789	Echinops_telfairi
ENSRNOG00000018704	Nolc1	81	94.595	ENSEASG00005007519	NOLC1	100	71.806	Equus_asinus_asinus
ENSRNOG00000018704	Nolc1	100	72.399	ENSECAG00000024700	NOLC1	100	71.845	Equus_caballus
ENSRNOG00000018704	Nolc1	81	78.151	ENSEEUG00000003212	NOLC1	87	73.109	Erinaceus_europaeus
ENSRNOG00000018704	Nolc1	100	71.053	ENSFCAG00000001239	NOLC1	67	70.928	Felis_catus
ENSRNOG00000018704	Nolc1	100	69.764	ENSGGOG00000002158	NOLC1	67	69.087	Gorilla_gorilla
ENSRNOG00000018704	Nolc1	100	72.230	ENSSTOG00000002168	NOLC1	100	70.126	Ictidomys_tridecemlineatus
ENSRNOG00000018704	Nolc1	100	72.385	ENSLAFG00000014245	NOLC1	100	70.613	Loxodonta_africana
ENSRNOG00000018704	Nolc1	100	72.765	ENSMFAG00000044654	NOLC1	66	75.210	Macaca_fascicularis
ENSRNOG00000018704	Nolc1	100	72.323	ENSMMUG00000001183	NOLC1	66	73.739	Macaca_mulatta
ENSRNOG00000018704	Nolc1	100	72.238	ENSMLEG00000040773	NOLC1	67	73.140	Mandrillus_leucophaeus
ENSRNOG00000018704	Nolc1	100	72.627	ENSMICG00000011811	NOLC1	100	72.902	Microcebus_murinus
ENSRNOG00000018704	Nolc1	100	76.554	ENSMOCG00000015232	Nolc1	68	81.551	Microtus_ochrogaster
ENSRNOG00000018704	Nolc1	100	79.555	MGP_CAROLIEiJ_G0023027	Nolc1	100	81.919	Mus_caroli
ENSRNOG00000018704	Nolc1	100	81.066	ENSMUSG00000015176	Nolc1	67	83.851	Mus_musculus
ENSRNOG00000018704	Nolc1	100	82.419	MGP_PahariEiJ_G0014517	Nolc1	68	84.440	Mus_pahari
ENSRNOG00000018704	Nolc1	65	83.547	MGP_SPRETEiJ_G0023948	Nolc1	100	82.378	Mus_spretus
ENSRNOG00000018704	Nolc1	100	73.232	ENSMPUG00000016887	NOLC1	67	74.486	Mustela_putorius_furo
ENSRNOG00000018704	Nolc1	100	73.648	ENSMLUG00000001726	NOLC1	100	70.233	Myotis_lucifugus
ENSRNOG00000018704	Nolc1	100	75.634	ENSNGAG00000024139	Nolc1	100	72.829	Nannospalax_galili
ENSRNOG00000018704	Nolc1	100	70.637	ENSNLEG00000015012	NOLC1	67	71.134	Nomascus_leucogenys
ENSRNOG00000018704	Nolc1	91	73.518	ENSOPRG00000009381	NOLC1	100	67.409	Ochotona_princeps
ENSRNOG00000018704	Nolc1	100	67.275	ENSODEG00000006304	NOLC1	100	65.963	Octodon_degus
ENSRNOG00000018704	Nolc1	100	74.685	ENSOCUG00000000516	-	66	72.176	Oryctolagus_cuniculus
ENSRNOG00000018704	Nolc1	100	69.676	ENSOGAG00000016359	NOLC1	100	68.644	Otolemur_garnettii
ENSRNOG00000018704	Nolc1	100	69.972	ENSOARG00000017556	NOLC1	67	73.597	Ovis_aries
ENSRNOG00000018704	Nolc1	100	71.330	ENSPPRG00000003072	NOLC1	67	73.402	Panthera_pardus
ENSRNOG00000018704	Nolc1	100	67.534	ENSPTIG00000014862	NOLC1	67	68.902	Panthera_tigris_altaica
ENSRNOG00000018704	Nolc1	100	70.728	ENSPTRG00000023882	NOLC1	66	70.798	Pan_troglodytes
ENSRNOG00000018704	Nolc1	100	72.486	ENSPANG00000021014	NOLC1	66	72.269	Papio_anubis
ENSRNOG00000018704	Nolc1	100	69.846	ENSPPYG00000002595	NOLC1	66	69.409	Pongo_abelii
ENSRNOG00000018704	Nolc1	70	95.000	ENSPCAG00000008388	NOLC1	53	95.000	Procavia_capensis
ENSRNOG00000018704	Nolc1	100	70.304	ENSPVAG00000004050	NOLC1	68	72.709	Pteropus_vampyrus
ENSRNOG00000018704	Nolc1	100	65.298	ENSRBIG00000032216	NOLC1	100	67.287	Rhinopithecus_bieti
ENSRNOG00000018704	Nolc1	100	69.861	ENSRROG00000038056	NOLC1	100	71.409	Rhinopithecus_roxellana
ENSRNOG00000018704	Nolc1	100	68.421	ENSSARG00000004111	NOLC1	66	70.478	Sorex_araneus
ENSRNOG00000018704	Nolc1	100	73.147	ENSSSCG00000010576	NOLC1	100	72.943	Sus_scrofa
ENSRNOG00000018704	Nolc1	100	68.595	ENSTTRG00000014974	NOLC1	100	69.368	Tursiops_truncatus
ENSRNOG00000018704	Nolc1	100	75.453	ENSUAMG00000028059	NOLC1	100	73.992	Ursus_americanus
ENSRNOG00000018704	Nolc1	100	75.490	ENSUMAG00000023063	NOLC1	100	73.324	Ursus_maritimus
ENSRNOG00000018704	Nolc1	74	60.448	ENSVPAG00000005767	NOLC1	54	65.217	Vicugna_pacos
ENSRNOG00000018704	Nolc1	100	69.986	ENSVVUG00000002661	NOLC1	67	68.267	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001042	RNA polymerase I core binding	-	ISO	Function
GO:0001042	RNA polymerase I core binding	-	ISS	Function
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003677	DNA binding	9553145.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	8972203.	IDA	Function
GO:0005515	protein binding	12446766.16208318.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	1623516.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	10679015.12446766.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006417	regulation of translation	-	ISO	Process
GO:0006417	regulation of translation	-	ISS	Process
GO:0006970	response to osmotic stress	10386602.	IEP	Process
GO:0007000	nucleolus organization	-	IEA	Process
GO:0007000	nucleolus organization	-	ISO	Process
GO:0008134	transcription factor binding	9553145.	IPI	Function
GO:0008139	nuclear localization sequence binding	1623516.	IDA	Function
GO:0008284	positive regulation of cell proliferation	12700234.	IGI	Process
GO:0014029	neural crest formation	-	ISO	Process
GO:0014029	neural crest formation	-	ISS	Process
GO:0014032	neural crest cell development	-	ISO	Process
GO:0014032	neural crest cell development	-	ISS	Process
GO:0015030	Cajal body	-	IEA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0019904	protein domain specific binding	9553145.	IPI	Function
GO:0031428	box C/D snoRNP complex	10679015.	IDA	Component
GO:0031429	box H/ACA snoRNP complex	10679015.	IDA	Component
GO:0033979	box H/ACA snoRNA metabolic process	12700234.	IGI	Process
GO:0034512	box C/D snoRNA binding	10679015.12446766.	IDA	Function
GO:0034513	box H/ACA snoRNA binding	10679015.12446766.	IDA	Function
GO:0042306	regulation of protein import into nucleus	1623516.	IDA	Process
GO:0045893	positive regulation of transcription, DNA-templated	8972203.	IDA	Process
GO:0046982	protein heterodimerization activity	-	IEA	Function
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0062064	box C/D snoRNP complex binding	10679015.	IDA	Function
GO:0062065	box H/ACA snoRNP complex binding	10679015.	IDA	Function