EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018766 (Gene tree)
Gene ID: 308911
Gene Symbol: Rrp8
Alias: LOC308911|MGC105831|RGD1308302
Full Name: ribosomal RNA processing 8
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 5268 bases
Position: chr1:170574349-170579616
Accession: 1308302
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000025651	Methyltransf_8	PF05148.15	2.6e-103	1	1
ENSRNOP00000068089	Methyltransf_8	PF05148.15	1.6e-102	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000025651	-	2393	-	ENSRNOP00000025651	457 (aa)	-	Q5U4F0
ENSRNOT00000076100	-	2107	-	ENSRNOP00000068089	215 (aa)	-	A0A096MJD6

Gene Model

Click here to download ENSRNOG00000018766's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018766's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018766	Rrp8	100	92.093	ENSG00000132275	RRP8	100	74.728	Homo_sapiens
ENSRNOG00000018766	Rrp8	100	93.488	ENSAMEG00000016307	RRP8	100	73.856	Ailuropoda_melanoleuca
ENSRNOG00000018766	Rrp8	100	57.674	ENSACIG00000019896	rrp8	68	45.238	Amphilophus_citrinellus
ENSRNOG00000018766	Rrp8	100	93.488	ENSANAG00000028524	RRP8	100	76.688	Aotus_nancymaae
ENSRNOG00000018766	Rrp8	100	92.558	ENSBTAG00000000697	RRP8	100	72.767	Bos_taurus
ENSRNOG00000018766	Rrp8	99	48.837	WBGene00020296	T07A9.8	100	37.433	Caenorhabditis_elegans
ENSRNOG00000018766	Rrp8	100	92.093	ENSCJAG00000014012	RRP8	100	75.599	Callithrix_jacchus
ENSRNOG00000018766	Rrp8	100	93.023	ENSCAFG00000006476	RRP8	68	72.629	Canis_familiaris
ENSRNOG00000018766	Rrp8	100	93.023	ENSCAFG00020009685	RRP8	100	72.629	Canis_lupus_dingo
ENSRNOG00000018766	Rrp8	100	93.488	ENSCHIG00000019002	RRP8	94	72.331	Capra_hircus
ENSRNOG00000018766	Rrp8	100	93.023	ENSTSYG00000003391	RRP8	100	73.856	Carlito_syrichta
ENSRNOG00000018766	Rrp8	82	93.182	ENSCAPG00000013284	RRP8	100	70.361	Cavia_aperea
ENSRNOG00000018766	Rrp8	100	93.488	ENSCPOG00000012515	RRP8	100	74.187	Cavia_porcellus
ENSRNOG00000018766	Rrp8	100	93.023	ENSCCAG00000035197	RRP8	100	76.688	Cebus_capucinus
ENSRNOG00000018766	Rrp8	100	91.163	ENSCATG00000029344	RRP8	100	72.985	Cercocebus_atys
ENSRNOG00000018766	Rrp8	100	93.023	ENSCLAG00000016099	RRP8	100	73.043	Chinchilla_lanigera
ENSRNOG00000018766	Rrp8	100	90.698	ENSCSAG00000004345	RRP8	100	71.678	Chlorocebus_sabaeus
ENSRNOG00000018766	Rrp8	54	68.644	ENSCPBG00000000945	-	83	68.644	Chrysemys_picta_bellii
ENSRNOG00000018766	Rrp8	100	52.995	ENSCSAVG00000006435	-	61	50.202	Ciona_savignyi
ENSRNOG00000018766	Rrp8	100	90.698	ENSCANG00000040771	RRP8	100	73.420	Colobus_angolensis_palliatus
ENSRNOG00000018766	Rrp8	100	96.279	ENSCGRG00001003103	Rrp8	100	87.090	Cricetulus_griseus_chok1gshd
ENSRNOG00000018766	Rrp8	100	96.279	ENSCGRG00000014009	Rrp8	100	86.652	Cricetulus_griseus_crigri
ENSRNOG00000018766	Rrp8	100	59.070	ENSCSEG00000007330	rrp8	68	52.899	Cynoglossus_semilaevis
ENSRNOG00000018766	Rrp8	100	57.870	ENSDARG00000071652	rrp8	80	57.895	Danio_rerio
ENSRNOG00000018766	Rrp8	100	92.558	ENSDNOG00000000812	RRP8	91	72.826	Dasypus_novemcinctus
ENSRNOG00000018766	Rrp8	100	93.953	ENSDORG00000000103	Rrp8	100	75.546	Dipodomys_ordii
ENSRNOG00000018766	Rrp8	100	43.519	FBgn0034422	CG7137	94	34.493	Drosophila_melanogaster
ENSRNOG00000018766	Rrp8	100	89.302	ENSETEG00000008877	RRP8	100	71.522	Echinops_telfairi
ENSRNOG00000018766	Rrp8	100	93.488	ENSEASG00005001761	RRP8	100	75.055	Equus_asinus_asinus
ENSRNOG00000018766	Rrp8	82	93.750	ENSECAG00000006612	RRP8	83	73.923	Equus_caballus
ENSRNOG00000018766	Rrp8	100	89.908	ENSFCAG00000015384	RRP8	86	88.333	Felis_catus
ENSRNOG00000018766	Rrp8	100	91.163	ENSFDAG00000008872	RRP8	100	71.150	Fukomys_damarensis
ENSRNOG00000018766	Rrp8	100	59.535	ENSGMOG00000007188	rrp8	91	45.133	Gadus_morhua
ENSRNOG00000018766	Rrp8	50	62.617	ENSGALG00000048769	-	76	62.617	Gallus_gallus
ENSRNOG00000018766	Rrp8	100	59.908	ENSGACG00000011343	rrp8	90	46.429	Gasterosteus_aculeatus
ENSRNOG00000018766	Rrp8	82	69.318	ENSGAGG00000005261	RRP8	83	48.354	Gopherus_agassizii
ENSRNOG00000018766	Rrp8	100	92.093	ENSGGOG00000000389	RRP8	100	75.381	Gorilla_gorilla
ENSRNOG00000018766	Rrp8	100	92.093	ENSHGLG00000003980	RRP8	100	71.087	Heterocephalus_glaber_female
ENSRNOG00000018766	Rrp8	100	92.093	ENSHGLG00100015659	RRP8	100	71.087	Heterocephalus_glaber_male
ENSRNOG00000018766	Rrp8	97	58.852	ENSHCOG00000001293	rrp8	60	47.097	Hippocampus_comes
ENSRNOG00000018766	Rrp8	100	92.558	ENSSTOG00000016272	RRP8	100	74.946	Ictidomys_tridecemlineatus
ENSRNOG00000018766	Rrp8	50	87.963	ENSJJAG00000021889	-	85	87.963	Jaculus_jaculus
ENSRNOG00000018766	Rrp8	100	93.953	ENSJJAG00000020608	-	100	78.696	Jaculus_jaculus
ENSRNOG00000018766	Rrp8	100	58.065	ENSLBEG00000019937	rrp8	72	49.829	Labrus_bergylta
ENSRNOG00000018766	Rrp8	100	61.395	ENSLACG00000001252	-	64	57.600	Latimeria_chalumnae
ENSRNOG00000018766	Rrp8	100	46.047	ENSLOCG00000013776	-	95	45.148	Lepisosteus_oculatus
ENSRNOG00000018766	Rrp8	100	90.698	ENSLAFG00000000112	RRP8	100	72.391	Loxodonta_africana
ENSRNOG00000018766	Rrp8	100	91.163	ENSMFAG00000046084	RRP8	100	73.420	Macaca_fascicularis
ENSRNOG00000018766	Rrp8	100	91.163	ENSMMUG00000007738	RRP8	100	73.203	Macaca_mulatta
ENSRNOG00000018766	Rrp8	100	91.163	ENSMNEG00000029648	RRP8	100	73.203	Macaca_nemestrina
ENSRNOG00000018766	Rrp8	100	91.163	ENSMLEG00000035110	RRP8	100	73.420	Mandrillus_leucophaeus
ENSRNOG00000018766	Rrp8	100	94.419	ENSMAUG00000000324	Rrp8	100	83.801	Mesocricetus_auratus
ENSRNOG00000018766	Rrp8	100	92.558	ENSMICG00000038472	RRP8	100	73.581	Microcebus_murinus
ENSRNOG00000018766	Rrp8	100	98.140	ENSMOCG00000002486	Rrp8	100	86.214	Microtus_ochrogaster
ENSRNOG00000018766	Rrp8	100	98.140	MGP_CAROLIEiJ_G0030236	Rrp8	100	92.341	Mus_caroli
ENSRNOG00000018766	Rrp8	100	97.209	ENSMUSG00000030888	Rrp8	100	91.904	Mus_musculus
ENSRNOG00000018766	Rrp8	100	98.605	MGP_PahariEiJ_G0013451	Rrp8	100	91.466	Mus_pahari
ENSRNOG00000018766	Rrp8	100	97.674	MGP_SPRETEiJ_G0031348	Rrp8	100	92.341	Mus_spretus
ENSRNOG00000018766	Rrp8	100	94.419	ENSMPUG00000005510	RRP8	100	73.002	Mustela_putorius_furo
ENSRNOG00000018766	Rrp8	100	93.953	ENSMLUG00000008938	RRP8	100	75.764	Myotis_lucifugus
ENSRNOG00000018766	Rrp8	100	96.279	ENSNGAG00000012450	Rrp8	100	80.963	Nannospalax_galili
ENSRNOG00000018766	Rrp8	100	57.339	ENSNBRG00000023416	rrp8	77	58.333	Neolamprologus_brichardi
ENSRNOG00000018766	Rrp8	100	92.093	ENSNLEG00000017445	RRP8	100	73.203	Nomascus_leucogenys
ENSRNOG00000018766	Rrp8	100	71.628	ENSMEUG00000004945	-	100	66.304	Notamacropus_eugenii
ENSRNOG00000018766	Rrp8	100	92.093	ENSOPRG00000008052	RRP8	100	71.584	Ochotona_princeps
ENSRNOG00000018766	Rrp8	100	92.558	ENSODEG00000011209	RRP8	100	73.043	Octodon_degus
ENSRNOG00000018766	Rrp8	100	92.558	ENSOCUG00000027619	RRP8	100	75.930	Oryctolagus_cuniculus
ENSRNOG00000018766	Rrp8	100	91.628	ENSOGAG00000007184	RRP8	100	71.335	Otolemur_garnettii
ENSRNOG00000018766	Rrp8	100	93.023	ENSOARG00000017435	RRP8	70	72.549	Ovis_aries
ENSRNOG00000018766	Rrp8	100	91.628	ENSPPAG00000040792	RRP8	100	74.946	Pan_paniscus
ENSRNOG00000018766	Rrp8	100	94.419	ENSPPRG00000022654	RRP8	100	74.353	Panthera_pardus
ENSRNOG00000018766	Rrp8	100	94.419	ENSPTIG00000011321	RRP8	100	74.353	Panthera_tigris_altaica
ENSRNOG00000018766	Rrp8	100	91.163	ENSPTRG00000003297	RRP8	100	74.728	Pan_troglodytes
ENSRNOG00000018766	Rrp8	100	91.163	ENSPANG00000006537	RRP8	100	73.420	Papio_anubis
ENSRNOG00000018766	Rrp8	50	63.889	ENSPMGG00000000968	-	82	63.889	Periophthalmus_magnuspinnatus
ENSRNOG00000018766	Rrp8	100	96.744	ENSPEMG00000017257	Rrp8	100	87.965	Peromyscus_maniculatus_bairdii
ENSRNOG00000018766	Rrp8	100	92.093	ENSPPYG00000003538	RRP8	100	74.510	Pongo_abelii
ENSRNOG00000018766	Rrp8	100	91.163	ENSPCAG00000016176	RRP8	100	70.217	Procavia_capensis
ENSRNOG00000018766	Rrp8	100	93.023	ENSPCOG00000024627	RRP8	100	73.799	Propithecus_coquereli
ENSRNOG00000018766	Rrp8	100	94.419	ENSPVAG00000002420	RRP8	100	74.398	Pteropus_vampyrus
ENSRNOG00000018766	Rrp8	100	90.698	ENSRBIG00000044485	RRP8	100	73.203	Rhinopithecus_bieti
ENSRNOG00000018766	Rrp8	100	90.698	ENSRROG00000045322	RRP8	100	73.203	Rhinopithecus_roxellana
ENSRNOG00000018766	Rrp8	90	38.428	YDR083W	-	59	38.197	Saccharomyces_cerevisiae
ENSRNOG00000018766	Rrp8	100	93.023	ENSSBOG00000035280	RRP8	100	76.253	Saimiri_boliviensis_boliviensis
ENSRNOG00000018766	Rrp8	100	76.389	ENSSHAG00000009273	-	84	55.581	Sarcophilus_harrisii
ENSRNOG00000018766	Rrp8	100	93.488	ENSSARG00000007949	RRP8	100	73.362	Sorex_araneus
ENSRNOG00000018766	Rrp8	100	60.369	ENSSPAG00000006664	rrp8	79	61.818	Stegastes_partitus
ENSRNOG00000018766	Rrp8	100	91.628	ENSSSCG00000023880	RRP8	100	71.522	Sus_scrofa
ENSRNOG00000018766	Rrp8	99	64.220	ENSTGUG00000000591	RRP8	100	63.717	Taeniopygia_guttata
ENSRNOG00000018766	Rrp8	53	65.217	ENSTNIG00000016245	-	92	65.217	Tetraodon_nigroviridis
ENSRNOG00000018766	Rrp8	100	92.558	ENSTBEG00000000237	RRP8	100	75.765	Tupaia_belangeri
ENSRNOG00000018766	Rrp8	100	93.953	ENSTTRG00000004867	RRP8	100	73.638	Tursiops_truncatus
ENSRNOG00000018766	Rrp8	100	93.488	ENSUAMG00000025756	RRP8	100	73.856	Ursus_americanus
ENSRNOG00000018766	Rrp8	100	93.488	ENSUMAG00000000528	RRP8	96	73.638	Ursus_maritimus
ENSRNOG00000018766	Rrp8	100	93.488	ENSVPAG00000008019	RRP8	100	74.459	Vicugna_pacos
ENSRNOG00000018766	Rrp8	100	92.558	ENSVVUG00000024346	RRP8	99	71.685	Vulpes_vulpes
ENSRNOG00000018766	Rrp8	100	60.000	ENSXCOG00000006156	rrp8	65	55.200	Xiphophorus_couchianus
ENSRNOG00000018766	Rrp8	100	60.000	ENSXMAG00000005011	rrp8	52	56.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000183	chromatin silencing at rDNA	21873635.	IBA	Process
GO:0000183	chromatin silencing at rDNA	-	ISO	Process
GO:0000183	chromatin silencing at rDNA	-	ISS	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005677	chromatin silencing complex	21873635.	IBA	Component
GO:0005677	chromatin silencing complex	-	ISO	Component
GO:0005677	chromatin silencing complex	-	ISS	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0033553	rDNA heterochromatin	21873635.	IBA	Component
GO:0033553	rDNA heterochromatin	-	ISO	Component
GO:0033553	rDNA heterochromatin	-	ISS	Component
GO:0035064	methylated histone binding	21873635.	IBA	Function
GO:0035064	methylated histone binding	-	ISO	Function
GO:0035064	methylated histone binding	-	ISS	Function
GO:0042149	cellular response to glucose starvation	21873635.	IBA	Process
GO:0042149	cellular response to glucose starvation	-	ISO	Process
GO:0046015	regulation of transcription by glucose	21873635.	IBA	Process
GO:0046015	regulation of transcription by glucose	-	ISO	Process
GO:0071158	positive regulation of cell cycle arrest	-	IEA	Process
GO:0071158	positive regulation of cell cycle arrest	-	ISO	Process
GO:0072332	intrinsic apoptotic signaling pathway by p53 class mediator	-	IEA	Process
GO:0072332	intrinsic apoptotic signaling pathway by p53 class mediator	-	ISO	Process