EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000018939 (Gene tree)
Gene ID: 300689
Gene Symbol: Rexo2
Alias: LOC300689|MGC105914|Smfn
Full Name: RNA exonuclease 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 11727 bases
Position: chr8:52802595-52814321
Accession: 1304874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000050718	RNase_T	PF00929.24	9e-33	1	1
ENSRNOP00000071290	RNase_T	PF00929.24	1.1e-32	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000047633	-	1183	-	ENSRNOP00000050718	237 (aa)	-	Q5U1X1
ENSRNOT00000087265	-	931	XM_006243001	ENSRNOP00000071290	254 (aa)	XP_006243063	A0A0G2K038

Gene Model

Click here to download ENSRNOG00000018939's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000018939's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000018939	Rexo2	100	94.515	ENSG00000076043	REXO2	100	96.809	Homo_sapiens
ENSRNOG00000018939	Rexo2	100	95.359	ENSAMEG00000013263	REXO2	100	95.359	Ailuropoda_melanoleuca
ENSRNOG00000018939	Rexo2	76	79.558	ENSACIG00000023553	smfn	97	79.558	Amphilophus_citrinellus
ENSRNOG00000018939	Rexo2	54	73.643	ENSAOCG00000011565	smfn	79	73.643	Amphiprion_ocellaris
ENSRNOG00000018939	Rexo2	81	79.275	ENSAPEG00000012435	smfn	71	79.275	Amphiprion_percula
ENSRNOG00000018939	Rexo2	95	72.566	ENSATEG00000015385	smfn	81	72.566	Anabas_testudineus
ENSRNOG00000018939	Rexo2	86	82.927	ENSAPLG00000005045	REXO2	100	82.927	Anas_platyrhynchos
ENSRNOG00000018939	Rexo2	90	68.224	ENSACAG00000011631	REXO2	92	69.903	Anolis_carolinensis
ENSRNOG00000018939	Rexo2	100	95.359	ENSANAG00000020834	REXO2	100	95.359	Aotus_nancymaae
ENSRNOG00000018939	Rexo2	61	71.528	ENSANAG00000027457	-	99	68.056	Aotus_nancymaae
ENSRNOG00000018939	Rexo2	97	70.000	ENSACLG00000024566	smfn	98	76.596	Astatotilapia_calliptera
ENSRNOG00000018939	Rexo2	100	95.781	ENSBTAG00000005843	REXO2	100	95.781	Bos_taurus
ENSRNOG00000018939	Rexo2	80	45.789	WBGene00007429	C08B6.8	88	57.971	Caenorhabditis_elegans
ENSRNOG00000018939	Rexo2	100	94.093	ENSCJAG00000012434	REXO2	100	94.093	Callithrix_jacchus
ENSRNOG00000018939	Rexo2	100	94.515	ENSCAFG00000013511	REXO2	100	94.515	Canis_familiaris
ENSRNOG00000018939	Rexo2	100	95.359	ENSCAFG00020002513	REXO2	100	95.359	Canis_lupus_dingo
ENSRNOG00000018939	Rexo2	100	96.203	ENSCHIG00000009264	REXO2	100	96.203	Capra_hircus
ENSRNOG00000018939	Rexo2	100	94.515	ENSTSYG00000002237	REXO2	100	94.515	Carlito_syrichta
ENSRNOG00000018939	Rexo2	82	84.103	ENSTSYG00000027948	-	100	84.103	Carlito_syrichta
ENSRNOG00000018939	Rexo2	79	97.340	ENSCAPG00000006093	REXO2	100	97.340	Cavia_aperea
ENSRNOG00000018939	Rexo2	100	95.359	ENSCPOG00000010548	REXO2	100	95.359	Cavia_porcellus
ENSRNOG00000018939	Rexo2	100	94.515	ENSCCAG00000034979	REXO2	100	94.515	Cebus_capucinus
ENSRNOG00000018939	Rexo2	100	94.515	ENSCATG00000015278	REXO2	100	94.515	Cercocebus_atys
ENSRNOG00000018939	Rexo2	100	94.937	ENSCLAG00000011195	REXO2	100	94.937	Chinchilla_lanigera
ENSRNOG00000018939	Rexo2	100	94.093	ENSCSAG00000002754	REXO2	100	94.093	Chlorocebus_sabaeus
ENSRNOG00000018939	Rexo2	100	93.249	ENSCHOG00000000642	-	100	93.249	Choloepus_hoffmanni
ENSRNOG00000018939	Rexo2	59	95.000	ENSCHOG00000013497	REXO2	100	95.000	Choloepus_hoffmanni
ENSRNOG00000018939	Rexo2	61	86.897	ENSCPBG00000009359	REXO2	100	86.897	Chrysemys_picta_bellii
ENSRNOG00000018939	Rexo2	76	58.011	ENSCING00000009858	-	87	58.011	Ciona_intestinalis
ENSRNOG00000018939	Rexo2	100	94.515	ENSCANG00000034756	REXO2	100	94.515	Colobus_angolensis_palliatus
ENSRNOG00000018939	Rexo2	100	97.046	ENSCGRG00001019814	-	100	97.046	Cricetulus_griseus_chok1gshd
ENSRNOG00000018939	Rexo2	85	97.525	ENSCGRG00001013673	-	99	97.525	Cricetulus_griseus_chok1gshd
ENSRNOG00000018939	Rexo2	86	96.098	ENSCGRG00001010922	-	100	96.098	Cricetulus_griseus_chok1gshd
ENSRNOG00000018939	Rexo2	100	97.046	ENSCGRG00000006235	Rexo2	100	97.046	Cricetulus_griseus_crigri
ENSRNOG00000018939	Rexo2	81	83.854	ENSCSEG00000007214	smfn	74	80.392	Cynoglossus_semilaevis
ENSRNOG00000018939	Rexo2	77	79.235	ENSCVAG00000012008	smfn	99	79.235	Cyprinodon_variegatus
ENSRNOG00000018939	Rexo2	81	81.152	ENSDARG00000009806	smfn	73	80.105	Danio_rerio
ENSRNOG00000018939	Rexo2	83	96.429	ENSDNOG00000046533	REXO2	100	95.694	Dasypus_novemcinctus
ENSRNOG00000018939	Rexo2	100	96.203	ENSDORG00000011255	Rexo2	100	96.203	Dipodomys_ordii
ENSRNOG00000018939	Rexo2	100	69.198	ENSDORG00000025142	-	100	70.464	Dipodomys_ordii
ENSRNOG00000018939	Rexo2	87	48.792	FBgn0039115	CG10214	98	48.544	Drosophila_melanogaster
ENSRNOG00000018939	Rexo2	93	69.683	ENSEBUG00000013964	REXO2	72	70.833	Eptatretus_burgeri
ENSRNOG00000018939	Rexo2	100	94.937	ENSEASG00005006674	REXO2	100	94.937	Equus_asinus_asinus
ENSRNOG00000018939	Rexo2	100	94.937	ENSECAG00000005988	REXO2	100	94.937	Equus_caballus
ENSRNOG00000018939	Rexo2	89	73.832	ENSELUG00000020072	smfn	74	73.832	Esox_lucius
ENSRNOG00000018939	Rexo2	100	96.203	ENSFCAG00000018632	REXO2	100	96.203	Felis_catus
ENSRNOG00000018939	Rexo2	80	87.831	ENSFALG00000010044	REXO2	94	87.831	Ficedula_albicollis
ENSRNOG00000018939	Rexo2	100	94.937	ENSFDAG00000011764	REXO2	100	94.937	Fukomys_damarensis
ENSRNOG00000018939	Rexo2	79	77.128	ENSGMOG00000006370	smfn	94	79.558	Gadus_morhua
ENSRNOG00000018939	Rexo2	83	90.355	ENSGALG00000035980	REXO2	99	81.897	Gallus_gallus
ENSRNOG00000018939	Rexo2	84	77.000	ENSGAFG00000015349	smfn	71	77.000	Gambusia_affinis
ENSRNOG00000018939	Rexo2	80	76.720	ENSGACG00000020096	smfn	87	78.977	Gasterosteus_aculeatus
ENSRNOG00000018939	Rexo2	95	83.111	ENSGAGG00000021126	REXO2	97	83.111	Gopherus_agassizii
ENSRNOG00000018939	Rexo2	100	94.937	ENSGGOG00000023267	REXO2	100	94.937	Gorilla_gorilla
ENSRNOG00000018939	Rexo2	54	74.016	ENSHBUG00000020097	REXO2	62	74.016	Haplochromis_burtoni
ENSRNOG00000018939	Rexo2	100	93.249	ENSHGLG00000013556	REXO2	100	93.249	Heterocephalus_glaber_female
ENSRNOG00000018939	Rexo2	100	93.671	ENSHGLG00100005257	REXO2	100	93.671	Heterocephalus_glaber_male
ENSRNOG00000018939	Rexo2	76	75.556	ENSHCOG00000007122	smfn	93	78.313	Hippocampus_comes
ENSRNOG00000018939	Rexo2	91	72.052	ENSIPUG00000020440	rexo2	77	77.404	Ictalurus_punctatus
ENSRNOG00000018939	Rexo2	100	95.359	ENSSTOG00000012465	REXO2	100	95.359	Ictidomys_tridecemlineatus
ENSRNOG00000018939	Rexo2	100	68.354	ENSJJAG00000022605	-	100	68.354	Jaculus_jaculus
ENSRNOG00000018939	Rexo2	100	96.203	ENSJJAG00000013710	-	100	96.203	Jaculus_jaculus
ENSRNOG00000018939	Rexo2	95	70.354	ENSKMAG00000016795	smfn	80	69.196	Kryptolebias_marmoratus
ENSRNOG00000018939	Rexo2	79	77.778	ENSLBEG00000006021	smfn	100	77.778	Labrus_bergylta
ENSRNOG00000018939	Rexo2	94	70.667	ENSLACG00000018623	REXO2	91	70.222	Latimeria_chalumnae
ENSRNOG00000018939	Rexo2	86	81.951	ENSLOCG00000002389	smfn	98	81.951	Lepisosteus_oculatus
ENSRNOG00000018939	Rexo2	100	91.983	ENSLAFG00000012451	REXO2	100	91.983	Loxodonta_africana
ENSRNOG00000018939	Rexo2	100	94.515	ENSMFAG00000041155	REXO2	100	94.515	Macaca_fascicularis
ENSRNOG00000018939	Rexo2	100	94.515	ENSMMUG00000012269	REXO2	100	94.515	Macaca_mulatta
ENSRNOG00000018939	Rexo2	100	94.515	ENSMNEG00000033379	REXO2	100	94.515	Macaca_nemestrina
ENSRNOG00000018939	Rexo2	100	94.515	ENSMLEG00000036571	REXO2	100	94.515	Mandrillus_leucophaeus
ENSRNOG00000018939	Rexo2	84	78.000	ENSMAMG00000021209	smfn	72	77.500	Mastacembelus_armatus
ENSRNOG00000018939	Rexo2	97	70.000	ENSMZEG00005020730	REXO2	87	70.000	Maylandia_zebra
ENSRNOG00000018939	Rexo2	97	70.000	ENSMZEG00005023224	-	87	70.000	Maylandia_zebra
ENSRNOG00000018939	Rexo2	68	87.117	ENSMGAG00000003026	REXO2	100	87.117	Meleagris_gallopavo
ENSRNOG00000018939	Rexo2	100	97.046	ENSMAUG00000014576	Rexo2	100	97.046	Mesocricetus_auratus
ENSRNOG00000018939	Rexo2	100	95.359	ENSMICG00000010094	REXO2	100	95.359	Microcebus_murinus
ENSRNOG00000018939	Rexo2	100	96.624	ENSMOCG00000009016	Rexo2	100	96.624	Microtus_ochrogaster
ENSRNOG00000018939	Rexo2	89	74.286	ENSMMOG00000006430	smfn	75	74.286	Mola_mola
ENSRNOG00000018939	Rexo2	98	90.517	ENSMODG00000013913	REXO2	98	90.517	Monodelphis_domestica
ENSRNOG00000018939	Rexo2	89	73.585	ENSMALG00000018130	smfn	59	73.585	Monopterus_albus
ENSRNOG00000018939	Rexo2	100	99.156	MGP_CAROLIEiJ_G0032166	Rexo2	100	99.156	Mus_caroli
ENSRNOG00000018939	Rexo2	100	99.578	ENSMUSG00000032026	Rexo2	100	100.000	Mus_musculus
ENSRNOG00000018939	Rexo2	100	99.578	MGP_PahariEiJ_G0015034	Rexo2	100	99.578	Mus_pahari
ENSRNOG00000018939	Rexo2	100	99.578	MGP_SPRETEiJ_G0033305	Rexo2	100	99.578	Mus_spretus
ENSRNOG00000018939	Rexo2	100	95.359	ENSMPUG00000003947	REXO2	100	95.359	Mustela_putorius_furo
ENSRNOG00000018939	Rexo2	100	94.937	ENSMLUG00000009030	REXO2	100	94.937	Myotis_lucifugus
ENSRNOG00000018939	Rexo2	86	97.561	ENSNGAG00000008819	Rexo2	100	97.561	Nannospalax_galili
ENSRNOG00000018939	Rexo2	77	78.571	ENSNBRG00000006529	smfn	96	78.571	Neolamprologus_brichardi
ENSRNOG00000018939	Rexo2	100	94.937	ENSNLEG00000029745	REXO2	100	94.937	Nomascus_leucogenys
ENSRNOG00000018939	Rexo2	92	92.694	ENSMEUG00000011558	REXO2	100	92.694	Notamacropus_eugenii
ENSRNOG00000018939	Rexo2	100	71.730	ENSOPRG00000011076	REXO2	100	71.730	Ochotona_princeps
ENSRNOG00000018939	Rexo2	79	97.872	ENSODEG00000009750	-	100	97.872	Octodon_degus
ENSRNOG00000018939	Rexo2	82	75.385	ENSODEG00000016046	-	98	75.385	Octodon_degus
ENSRNOG00000018939	Rexo2	88	76.442	ENSONIG00000001954	smfn	89	76.442	Oreochromis_niloticus
ENSRNOG00000018939	Rexo2	88	93.750	ENSOANG00000001754	REXO2	100	86.777	Ornithorhynchus_anatinus
ENSRNOG00000018939	Rexo2	100	94.937	ENSOCUG00000004274	REXO2	95	94.937	Oryctolagus_cuniculus
ENSRNOG00000018939	Rexo2	89	77.619	ENSORLG00000005119	smfn	68	77.619	Oryzias_latipes
ENSRNOG00000018939	Rexo2	89	77.619	ENSORLG00020010121	smfn	68	77.619	Oryzias_latipes_hni
ENSRNOG00000018939	Rexo2	88	78.469	ENSORLG00015015699	smfn	67	78.469	Oryzias_latipes_hsok
ENSRNOG00000018939	Rexo2	60	74.126	ENSOMEG00000008940	-	100	74.126	Oryzias_melastigma
ENSRNOG00000018939	Rexo2	87	76.812	ENSOMEG00000016878	REXO2	76	76.812	Oryzias_melastigma
ENSRNOG00000018939	Rexo2	100	95.781	ENSOGAG00000016860	REXO2	100	95.781	Otolemur_garnettii
ENSRNOG00000018939	Rexo2	85	98.010	ENSOARG00000001040	REXO2	100	94.366	Ovis_aries
ENSRNOG00000018939	Rexo2	100	94.515	ENSPPAG00000039849	REXO2	100	94.515	Pan_paniscus
ENSRNOG00000018939	Rexo2	100	96.203	ENSPPRG00000007255	REXO2	100	96.203	Panthera_pardus
ENSRNOG00000018939	Rexo2	79	97.872	ENSPTIG00000015578	REXO2	100	97.872	Panthera_tigris_altaica
ENSRNOG00000018939	Rexo2	100	94.515	ENSPTRG00000004306	REXO2	100	94.515	Pan_troglodytes
ENSRNOG00000018939	Rexo2	100	94.515	ENSPANG00000010675	REXO2	100	94.515	Papio_anubis
ENSRNOG00000018939	Rexo2	85	78.713	ENSPKIG00000000911	smfn	77	83.108	Paramormyrops_kingsleyae
ENSRNOG00000018939	Rexo2	84	90.500	ENSPSIG00000005151	REXO2	81	84.549	Pelodiscus_sinensis
ENSRNOG00000018939	Rexo2	79	79.787	ENSPMGG00000007442	smfn	100	79.787	Periophthalmus_magnuspinnatus
ENSRNOG00000018939	Rexo2	100	81.857	ENSPEMG00000001421	Rexo2	100	81.857	Peromyscus_maniculatus_bairdii
ENSRNOG00000018939	Rexo2	95	92.000	ENSPCIG00000011227	REXO2	60	92.000	Phascolarctos_cinereus
ENSRNOG00000018939	Rexo2	84	78.500	ENSPFOG00000017861	smfn	99	78.500	Poecilia_formosa
ENSRNOG00000018939	Rexo2	75	75.281	ENSPLAG00000007327	REXO2	68	75.281	Poecilia_latipinna
ENSRNOG00000018939	Rexo2	84	78.500	ENSPMEG00000017343	smfn	71	78.500	Poecilia_mexicana
ENSRNOG00000018939	Rexo2	84	77.500	ENSPREG00000016438	smfn	71	77.500	Poecilia_reticulata
ENSRNOG00000018939	Rexo2	100	94.937	ENSPPYG00000003895	REXO2	100	94.937	Pongo_abelii
ENSRNOG00000018939	Rexo2	100	92.827	ENSPCAG00000005237	REXO2	100	92.827	Procavia_capensis
ENSRNOG00000018939	Rexo2	82	93.846	ENSPCOG00000027639	REXO2	100	93.846	Propithecus_coquereli
ENSRNOG00000018939	Rexo2	100	84.519	ENSPVAG00000005295	REXO2	100	84.519	Pteropus_vampyrus
ENSRNOG00000018939	Rexo2	97	69.565	ENSPNYG00000018401	smfn	87	69.565	Pundamilia_nyererei
ENSRNOG00000018939	Rexo2	82	83.077	ENSPNAG00000005290	smfn	75	81.373	Pygocentrus_nattereri
ENSRNOG00000018939	Rexo2	100	94.515	ENSRBIG00000037809	REXO2	100	94.515	Rhinopithecus_bieti
ENSRNOG00000018939	Rexo2	100	94.515	ENSRROG00000038928	REXO2	100	94.515	Rhinopithecus_roxellana
ENSRNOG00000018939	Rexo2	73	43.956	YLR059C	REX2	75	41.379	Saccharomyces_cerevisiae
ENSRNOG00000018939	Rexo2	100	94.937	ENSSBOG00000028651	REXO2	100	94.937	Saimiri_boliviensis_boliviensis
ENSRNOG00000018939	Rexo2	95	91.556	ENSSHAG00000008008	REXO2	96	91.556	Sarcophilus_harrisii
ENSRNOG00000018939	Rexo2	79	80.214	ENSSFOG00015022414	smfn	99	80.214	Scleropages_formosus
ENSRNOG00000018939	Rexo2	83	77.665	ENSSMAG00000003168	smfn	72	77.665	Scophthalmus_maximus
ENSRNOG00000018939	Rexo2	84	79.500	ENSSDUG00000015624	smfn	70	79.500	Seriola_dumerili
ENSRNOG00000018939	Rexo2	86	79.512	ENSSLDG00000014005	smfn	72	79.512	Seriola_lalandi_dorsalis
ENSRNOG00000018939	Rexo2	54	98.425	ENSSARG00000014530	REXO2	100	98.425	Sorex_araneus
ENSRNOG00000018939	Rexo2	67	86.164	ENSSPUG00000006005	REXO2	85	86.164	Sphenodon_punctatus
ENSRNOG00000018939	Rexo2	76	81.215	ENSSPAG00000001530	smfn	97	81.215	Stegastes_partitus
ENSRNOG00000018939	Rexo2	100	95.781	ENSSSCG00000015056	REXO2	100	95.781	Sus_scrofa
ENSRNOG00000018939	Rexo2	84	87.437	ENSTGUG00000000121	REXO2	99	79.741	Taeniopygia_guttata
ENSRNOG00000018939	Rexo2	96	68.722	ENSTRUG00000021529	smfn	84	68.282	Takifugu_rubripes
ENSRNOG00000018939	Rexo2	92	73.853	ENSTNIG00000008588	smfn	95	74.771	Tetraodon_nigroviridis
ENSRNOG00000018939	Rexo2	100	95.359	ENSTBEG00000017040	REXO2	100	95.359	Tupaia_belangeri
ENSRNOG00000018939	Rexo2	100	94.093	ENSTTRG00000014928	REXO2	100	94.093	Tursiops_truncatus
ENSRNOG00000018939	Rexo2	100	88.235	ENSUAMG00000019096	REXO2	100	95.385	Ursus_americanus
ENSRNOG00000018939	Rexo2	100	95.781	ENSUMAG00000003770	REXO2	100	95.781	Ursus_maritimus
ENSRNOG00000018939	Rexo2	79	77.660	ENSVPAG00000006301	REXO2	100	77.660	Vicugna_pacos
ENSRNOG00000018939	Rexo2	100	95.359	ENSVVUG00000025223	REXO2	100	95.359	Vulpes_vulpes
ENSRNOG00000018939	Rexo2	89	80.734	ENSXETG00000012648	rexo2	89	80.645	Xenopus_tropicalis
ENSRNOG00000018939	Rexo2	93	66.964	ENSXCOG00000018838	smfn	94	77.297	Xiphophorus_couchianus
ENSRNOG00000018939	Rexo2	84	76.500	ENSXMAG00000021125	smfn	64	76.500	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000175	3'-5'-exoribonuclease activity	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005758	mitochondrial intermembrane space	-	IEA	Component
GO:0005759	mitochondrial matrix	-	IEA	Component
GO:0005925	focal adhesion	-	IEA	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0006139	nucleobase-containing compound metabolic process	-	ISO	Process
GO:0008408	3'-5' exonuclease activity	-	ISO	Function
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process