EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019245 (Gene tree)
Gene ID: 293488
Gene Symbol: Sgf29
Alias: Ccdc101|LOC293488|RGD1310609|rSGF29
Full Name: SAGA complex associated factor 29
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 33428 bases
Position: chr1:198067066-198100493
Accession: 1310609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026146	DUF1325	PF07039.11	4.9e-40	1	1
ENSRNOP00000075057	DUF1325	PF07039.11	3.7e-32	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000084824	-	1400	-	ENSRNOP00000075057	265 (aa)	-	A0A0G2K9M7
ENSRNOT00000026146	-	995	XM_006230231	ENSRNOP00000026146	293 (aa)	XP_006230293	P0C606

Gene Model

Click here to download ENSRNOG00000019245's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019245's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019245	Sgf29	100	98.635	ENSG00000176476	SGF29	100	98.635	Homo_sapiens
ENSRNOG00000019245	Sgf29	99	92.069	ENSAPOG00000007072	sgf29	100	92.069	Acanthochromis_polyacanthus
ENSRNOG00000019245	Sgf29	100	96.928	ENSAMEG00000015388	SGF29	100	96.928	Ailuropoda_melanoleuca
ENSRNOG00000019245	Sgf29	85	91.968	ENSACIG00000024432	sgf29	100	91.968	Amphilophus_citrinellus
ENSRNOG00000019245	Sgf29	99	92.069	ENSAOCG00000013494	sgf29	100	92.069	Amphiprion_ocellaris
ENSRNOG00000019245	Sgf29	96	90.588	ENSAPEG00000007284	sgf29	94	90.588	Amphiprion_percula
ENSRNOG00000019245	Sgf29	99	92.069	ENSATEG00000017566	sgf29	100	92.069	Anabas_testudineus
ENSRNOG00000019245	Sgf29	100	96.928	ENSACAG00000006595	SGF29	100	96.928	Anolis_carolinensis
ENSRNOG00000019245	Sgf29	100	78.157	ENSANAG00000032813	-	96	86.066	Aotus_nancymaae
ENSRNOG00000019245	Sgf29	99	84.247	ENSANAG00000023337	-	93	84.247	Aotus_nancymaae
ENSRNOG00000019245	Sgf29	100	98.635	ENSANAG00000037641	-	100	98.635	Aotus_nancymaae
ENSRNOG00000019245	Sgf29	99	91.379	ENSACLG00000016730	sgf29	100	91.379	Astatotilapia_calliptera
ENSRNOG00000019245	Sgf29	100	90.970	ENSAMXG00000003395	sgf29	100	90.970	Astyanax_mexicanus
ENSRNOG00000019245	Sgf29	100	99.659	ENSBTAG00000016883	SGF29	100	99.659	Bos_taurus
ENSRNOG00000019245	Sgf29	78	37.991	WBGene00021205	Y17G9B.8	89	37.991	Caenorhabditis_elegans
ENSRNOG00000019245	Sgf29	100	98.635	ENSCJAG00000006577	SGF29	100	98.635	Callithrix_jacchus
ENSRNOG00000019245	Sgf29	96	99.645	ENSCAFG00000017127	SGF29	92	99.645	Canis_familiaris
ENSRNOG00000019245	Sgf29	96	99.645	ENSCAFG00020017597	SGF29	92	99.645	Canis_lupus_dingo
ENSRNOG00000019245	Sgf29	100	99.659	ENSCHIG00000015325	SGF29	100	99.659	Capra_hircus
ENSRNOG00000019245	Sgf29	84	96.748	ENSTSYG00000003314	-	97	96.748	Carlito_syrichta
ENSRNOG00000019245	Sgf29	100	99.317	ENSTSYG00000025878	-	100	99.317	Carlito_syrichta
ENSRNOG00000019245	Sgf29	88	90.254	ENSCAPG00000000732	SGF29	96	86.640	Cavia_aperea
ENSRNOG00000019245	Sgf29	100	98.635	ENSCPOG00000027037	SGF29	100	98.635	Cavia_porcellus
ENSRNOG00000019245	Sgf29	99	74.315	ENSCCAG00000027313	-	66	74.315	Cebus_capucinus
ENSRNOG00000019245	Sgf29	100	98.635	ENSCCAG00000027359	-	100	98.635	Cebus_capucinus
ENSRNOG00000019245	Sgf29	100	98.635	ENSCATG00000034020	SGF29	100	98.635	Cercocebus_atys
ENSRNOG00000019245	Sgf29	100	99.317	ENSCLAG00000011510	SGF29	100	99.317	Chinchilla_lanigera
ENSRNOG00000019245	Sgf29	100	92.642	ENSCSAG00000006259	SGF29	100	92.642	Chlorocebus_sabaeus
ENSRNOG00000019245	Sgf29	96	65.490	ENSCHOG00000013831	-	100	65.490	Choloepus_hoffmanni
ENSRNOG00000019245	Sgf29	100	97.611	ENSCPBG00000012638	SGF29	85	97.611	Chrysemys_picta_bellii
ENSRNOG00000019245	Sgf29	99	62.284	ENSCING00000012953	-	99	62.284	Ciona_intestinalis
ENSRNOG00000019245	Sgf29	79	57.619	ENSCSAVG00000007328	-	87	57.619	Ciona_savignyi
ENSRNOG00000019245	Sgf29	94	98.394	ENSCANG00000039654	SGF29	100	98.394	Colobus_angolensis_palliatus
ENSRNOG00000019245	Sgf29	100	94.218	ENSCGRG00001014941	-	100	94.218	Cricetulus_griseus_chok1gshd
ENSRNOG00000019245	Sgf29	100	99.659	ENSCGRG00001016730	-	100	99.659	Cricetulus_griseus_chok1gshd
ENSRNOG00000019245	Sgf29	100	99.317	ENSCGRG00000003808	Sgf29	100	99.317	Cricetulus_griseus_crigri
ENSRNOG00000019245	Sgf29	82	90.871	ENSCSEG00000010575	sgf29	86	90.909	Cynoglossus_semilaevis
ENSRNOG00000019245	Sgf29	99	92.069	ENSCVAG00000014381	sgf29	100	92.069	Cyprinodon_variegatus
ENSRNOG00000019245	Sgf29	100	91.809	ENSDARG00000002339	sgf29	100	91.809	Danio_rerio
ENSRNOG00000019245	Sgf29	100	99.659	ENSDNOG00000048338	SGF29	99	99.659	Dasypus_novemcinctus
ENSRNOG00000019245	Sgf29	100	99.317	ENSDORG00000007002	Sgf29	100	99.317	Dipodomys_ordii
ENSRNOG00000019245	Sgf29	98	48.958	FBgn0050390	Sgf29	94	48.958	Drosophila_melanogaster
ENSRNOG00000019245	Sgf29	99	80.137	ENSEBUG00000008631	sgf29	98	80.137	Eptatretus_burgeri
ENSRNOG00000019245	Sgf29	92	99.628	ENSEASG00005014751	SGF29	91	99.628	Equus_asinus_asinus
ENSRNOG00000019245	Sgf29	100	99.659	ENSECAG00000011445	SGF29	95	99.659	Equus_caballus
ENSRNOG00000019245	Sgf29	91	99.627	ENSEEUG00000008521	SGF29	100	99.627	Erinaceus_europaeus
ENSRNOG00000019245	Sgf29	99	92.069	ENSELUG00000023888	sgf29	100	92.069	Esox_lucius
ENSRNOG00000019245	Sgf29	100	99.659	ENSFCAG00000012297	SGF29	100	99.659	Felis_catus
ENSRNOG00000019245	Sgf29	100	98.976	ENSFDAG00000012928	SGF29	100	98.976	Fukomys_damarensis
ENSRNOG00000019245	Sgf29	95	91.304	ENSFHEG00000022427	sgf29	93	91.270	Fundulus_heteroclitus
ENSRNOG00000019245	Sgf29	99	89.691	ENSGMOG00000000328	sgf29	100	89.691	Gadus_morhua
ENSRNOG00000019245	Sgf29	100	93.857	ENSGALG00000020590	SGF29	100	93.857	Gallus_gallus
ENSRNOG00000019245	Sgf29	99	92.069	ENSGAFG00000020626	sgf29	100	92.069	Gambusia_affinis
ENSRNOG00000019245	Sgf29	99	88.966	ENSGACG00000015001	sgf29	100	88.966	Gasterosteus_aculeatus
ENSRNOG00000019245	Sgf29	100	97.952	ENSGAGG00000012655	SGF29	100	97.952	Gopherus_agassizii
ENSRNOG00000019245	Sgf29	100	98.294	ENSGGOG00000000807	-	100	98.294	Gorilla_gorilla
ENSRNOG00000019245	Sgf29	78	84.541	ENSHBUG00000013677	sgf29	91	79.556	Haplochromis_burtoni
ENSRNOG00000019245	Sgf29	100	99.317	ENSHGLG00000014468	SGF29	100	99.317	Heterocephalus_glaber_female
ENSRNOG00000019245	Sgf29	100	99.317	ENSHGLG00100000132	SGF29	100	99.317	Heterocephalus_glaber_male
ENSRNOG00000019245	Sgf29	99	91.379	ENSHCOG00000002018	sgf29	100	91.379	Hippocampus_comes
ENSRNOG00000019245	Sgf29	100	91.809	ENSIPUG00000001851	sgf29	100	91.809	Ictalurus_punctatus
ENSRNOG00000019245	Sgf29	100	99.659	ENSSTOG00000013258	SGF29	100	99.659	Ictidomys_tridecemlineatus
ENSRNOG00000019245	Sgf29	100	99.659	ENSJJAG00000009013	Sgf29	100	99.659	Jaculus_jaculus
ENSRNOG00000019245	Sgf29	99	90.690	ENSKMAG00000004341	sgf29	99	90.690	Kryptolebias_marmoratus
ENSRNOG00000019245	Sgf29	85	91.200	ENSLBEG00000006754	sgf29	100	91.200	Labrus_bergylta
ENSRNOG00000019245	Sgf29	83	80.658	ENSLACG00000005336	SGF29	99	80.658	Latimeria_chalumnae
ENSRNOG00000019245	Sgf29	100	99.659	ENSLAFG00000028439	SGF29	100	99.659	Loxodonta_africana
ENSRNOG00000019245	Sgf29	100	98.635	ENSMFAG00000038040	SGF29	100	98.635	Macaca_fascicularis
ENSRNOG00000019245	Sgf29	100	98.635	ENSMMUG00000011370	SGF29	100	98.635	Macaca_mulatta
ENSRNOG00000019245	Sgf29	100	98.294	ENSMNEG00000043534	SGF29	100	98.294	Macaca_nemestrina
ENSRNOG00000019245	Sgf29	100	98.635	ENSMLEG00000031039	SGF29	100	98.635	Mandrillus_leucophaeus
ENSRNOG00000019245	Sgf29	99	91.724	ENSMAMG00000017907	sgf29	100	91.724	Mastacembelus_armatus
ENSRNOG00000019245	Sgf29	99	91.379	ENSMZEG00005001194	sgf29	100	91.379	Maylandia_zebra
ENSRNOG00000019245	Sgf29	99	91.379	ENSMZEG00005002947	sgf29	100	91.379	Maylandia_zebra
ENSRNOG00000019245	Sgf29	100	93.857	ENSMGAG00000012201	SGF29	100	93.857	Meleagris_gallopavo
ENSRNOG00000019245	Sgf29	100	99.659	ENSMAUG00000011063	Sgf29	100	99.659	Mesocricetus_auratus
ENSRNOG00000019245	Sgf29	100	99.317	ENSMICG00000009973	SGF29	100	99.317	Microcebus_murinus
ENSRNOG00000019245	Sgf29	100	99.659	ENSMOCG00000021358	Sgf29	100	99.659	Microtus_ochrogaster
ENSRNOG00000019245	Sgf29	85	89.328	ENSMMOG00000012706	sgf29	100	89.328	Mola_mola
ENSRNOG00000019245	Sgf29	100	97.611	ENSMODG00000015642	SGF29	100	97.611	Monodelphis_domestica
ENSRNOG00000019245	Sgf29	99	92.069	ENSMALG00000000231	sgf29	96	92.069	Monopterus_albus
ENSRNOG00000019245	Sgf29	100	99.659	MGP_CAROLIEiJ_G0030456	Sgf29	100	99.659	Mus_caroli
ENSRNOG00000019245	Sgf29	100	99.659	ENSMUSG00000030714	Sgf29	100	99.659	Mus_musculus
ENSRNOG00000019245	Sgf29	100	99.659	MGP_PahariEiJ_G0013666	Sgf29	100	99.659	Mus_pahari
ENSRNOG00000019245	Sgf29	100	99.659	MGP_SPRETEiJ_G0031570	Sgf29	100	99.659	Mus_spretus
ENSRNOG00000019245	Sgf29	100	99.659	ENSMPUG00000012669	SGF29	100	99.659	Mustela_putorius_furo
ENSRNOG00000019245	Sgf29	100	99.659	ENSMLUG00000022554	SGF29	100	99.659	Myotis_lucifugus
ENSRNOG00000019245	Sgf29	100	99.317	ENSNGAG00000022634	Sgf29	100	99.317	Nannospalax_galili
ENSRNOG00000019245	Sgf29	85	91.566	ENSNBRG00000020775	sgf29	100	91.566	Neolamprologus_brichardi
ENSRNOG00000019245	Sgf29	98	90.038	ENSNLEG00000001604	SGF29	99	88.356	Nomascus_leucogenys
ENSRNOG00000019245	Sgf29	76	98.649	ENSMEUG00000006221	SGF29	76	98.649	Notamacropus_eugenii
ENSRNOG00000019245	Sgf29	100	99.317	ENSOPRG00000009316	SGF29	100	99.317	Ochotona_princeps
ENSRNOG00000019245	Sgf29	100	98.635	ENSODEG00000013702	SGF29	100	98.635	Octodon_degus
ENSRNOG00000019245	Sgf29	99	91.409	ENSONIG00000009377	sgf29	100	91.409	Oreochromis_niloticus
ENSRNOG00000019245	Sgf29	75	98.485	ENSOANG00000009696	SGF29	100	98.485	Ornithorhynchus_anatinus
ENSRNOG00000019245	Sgf29	92	99.259	ENSOCUG00000025361	-	100	99.259	Oryctolagus_cuniculus
ENSRNOG00000019245	Sgf29	83	76.639	ENSOCUG00000021684	-	100	76.639	Oryctolagus_cuniculus
ENSRNOG00000019245	Sgf29	99	91.034	ENSORLG00000027873	sgf29	100	91.034	Oryzias_latipes
ENSRNOG00000019245	Sgf29	99	91.034	ENSORLG00020020976	-	100	91.034	Oryzias_latipes_hni
ENSRNOG00000019245	Sgf29	99	91.034	ENSORLG00015011795	sgf29	100	91.034	Oryzias_latipes_hsok
ENSRNOG00000019245	Sgf29	99	91.034	ENSOMEG00000020118	sgf29	100	91.034	Oryzias_melastigma
ENSRNOG00000019245	Sgf29	100	65.986	ENSOGAG00000034571	-	100	65.986	Otolemur_garnettii
ENSRNOG00000019245	Sgf29	100	92.150	ENSOGAG00000015794	-	100	92.150	Otolemur_garnettii
ENSRNOG00000019245	Sgf29	100	99.659	ENSOARG00000003226	SGF29	100	99.659	Ovis_aries
ENSRNOG00000019245	Sgf29	96	98.577	ENSPPAG00000039380	SGF29	99	96.708	Pan_paniscus
ENSRNOG00000019245	Sgf29	100	99.659	ENSPPRG00000006831	SGF29	100	99.659	Panthera_pardus
ENSRNOG00000019245	Sgf29	100	99.659	ENSPTIG00000014381	SGF29	100	99.659	Panthera_tigris_altaica
ENSRNOG00000019245	Sgf29	100	74.061	ENSPTRG00000007925	SGF29	100	73.913	Pan_troglodytes
ENSRNOG00000019245	Sgf29	100	98.635	ENSPANG00000019684	SGF29	100	98.635	Papio_anubis
ENSRNOG00000019245	Sgf29	97	91.797	ENSPKIG00000018503	sgf29	100	88.396	Paramormyrops_kingsleyae
ENSRNOG00000019245	Sgf29	99	85.172	ENSPMGG00000006683	sgf29	99	85.172	Periophthalmus_magnuspinnatus
ENSRNOG00000019245	Sgf29	100	97.952	ENSPCIG00000025200	SGF29	100	97.952	Phascolarctos_cinereus
ENSRNOG00000019245	Sgf29	99	92.414	ENSPFOG00000010035	sgf29	99	92.414	Poecilia_formosa
ENSRNOG00000019245	Sgf29	99	92.414	ENSPLAG00000000559	sgf29	100	92.414	Poecilia_latipinna
ENSRNOG00000019245	Sgf29	99	92.414	ENSPMEG00000007026	sgf29	100	92.414	Poecilia_mexicana
ENSRNOG00000019245	Sgf29	99	92.069	ENSPREG00000011868	sgf29	100	92.069	Poecilia_reticulata
ENSRNOG00000019245	Sgf29	100	98.635	ENSPPYG00000007233	SGF29	100	98.635	Pongo_abelii
ENSRNOG00000019245	Sgf29	100	99.317	ENSPCOG00000028233	SGF29	100	99.317	Propithecus_coquereli
ENSRNOG00000019245	Sgf29	98	89.575	ENSPNYG00000012353	sgf29	100	91.566	Pundamilia_nyererei
ENSRNOG00000019245	Sgf29	85	92.369	ENSPNAG00000014651	sgf29	100	92.369	Pygocentrus_nattereri
ENSRNOG00000019245	Sgf29	100	98.635	ENSRBIG00000041003	SGF29	100	98.635	Rhinopithecus_bieti
ENSRNOG00000019245	Sgf29	100	98.635	ENSRROG00000044894	SGF29	100	98.635	Rhinopithecus_roxellana
ENSRNOG00000019245	Sgf29	91	98.496	ENSSBOG00000008004	SGF29	100	98.394	Saimiri_boliviensis_boliviensis
ENSRNOG00000019245	Sgf29	100	97.952	ENSSHAG00000011279	-	100	97.952	Sarcophilus_harrisii
ENSRNOG00000019245	Sgf29	83	64.253	ENSSHAG00000002930	-	100	66.245	Sarcophilus_harrisii
ENSRNOG00000019245	Sgf29	100	88.055	ENSSFOG00015001254	sgf29	100	88.055	Scleropages_formosus
ENSRNOG00000019245	Sgf29	99	92.414	ENSSMAG00000016613	sgf29	100	92.414	Scophthalmus_maximus
ENSRNOG00000019245	Sgf29	99	92.069	ENSSDUG00000005977	sgf29	100	92.069	Seriola_dumerili
ENSRNOG00000019245	Sgf29	99	92.069	ENSSLDG00000012446	sgf29	100	92.069	Seriola_lalandi_dorsalis
ENSRNOG00000019245	Sgf29	100	97.270	ENSSPUG00000010121	SGF29	100	97.270	Sphenodon_punctatus
ENSRNOG00000019245	Sgf29	99	92.069	ENSSPAG00000018994	sgf29	100	92.069	Stegastes_partitus
ENSRNOG00000019245	Sgf29	100	99.659	ENSSSCG00000022778	SGF29	100	99.659	Sus_scrofa
ENSRNOG00000019245	Sgf29	96	90.780	ENSTNIG00000006496	SGF29	100	90.780	Tetraodon_nigroviridis
ENSRNOG00000019245	Sgf29	99	91.034	ENSTNIG00000001984	sgf29	99	91.034	Tetraodon_nigroviridis
ENSRNOG00000019245	Sgf29	96	99.608	ENSUAMG00000010172	SGF29	85	99.628	Ursus_americanus
ENSRNOG00000019245	Sgf29	88	98.837	ENSUMAG00000010966	SGF29	79	98.837	Ursus_maritimus
ENSRNOG00000019245	Sgf29	100	96.246	ENSXETG00000033185	sgf29	100	96.246	Xenopus_tropicalis
ENSRNOG00000019245	Sgf29	99	92.096	ENSXCOG00000011501	sgf29	100	92.096	Xiphophorus_couchianus
ENSRNOG00000019245	Sgf29	99	92.414	ENSXMAG00000010932	sgf29	100	92.414	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000124	SAGA complex	21873635.	IBA	Component
GO:0000124	SAGA complex	-	IEA	Component
GO:0001135	RNA polymerase II transcription regulator recruiting activity	21873635.	IBA	Function
GO:0005515	protein binding	17334388.	IPI	Function
GO:0005634	nucleus	17334388.	IDA	Component
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	21873635.	IBA	Component
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	-	ISO	Component
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	-	ISS	Component
GO:0016573	histone acetylation	-	ISO	Process
GO:0016573	histone acetylation	-	ISS	Process
GO:0019899	enzyme binding	17334388.	IPI	Function
GO:0035064	methylated histone binding	21873635.	IBA	Function
GO:0035064	methylated histone binding	-	ISO	Function
GO:0035064	methylated histone binding	-	ISS	Function
GO:0043966	histone H3 acetylation	21873635.	IBA	Process
GO:0043966	histone H3 acetylation	-	ISO	Process
GO:0047485	protein N-terminus binding	17334388.	IPI	Function
GO:0051123	RNA polymerase II preinitiation complex assembly	-	IEA	Process
GO:0070461	SAGA-type complex	-	ISO	Component
GO:0070461	SAGA-type complex	-	ISS	Component