EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019295 (Gene tree)
Gene ID: 25530
Gene Symbol: Rab12
Alias: LOC100362985
Full Name: RAB12%2C member RAS oncogene family
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 25508 bases
Position: chr9:114684039-114709546
Accession: 3527
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000059602	MMR_HSR1	PF01926.23	2e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026177	-	738	-	ENSRNOP00000059602	245 (aa)	-	D4A376

Gene Model

Click here to download ENSRNOG00000019295's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019295's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000019295	Rab12	67	46.626	ENSRNOG00000022014	Rab35	80	46.626
ENSRNOG00000019295	Rab12	59	31.034	ENSRNOG00000014060	Mras	74	31.410
ENSRNOG00000019295	Rab12	76	47.059	ENSRNOG00000010224	Rab30	88	47.283
ENSRNOG00000019295	Rab12	72	32.402	ENSRNOG00000012629	Rab23	72	32.402
ENSRNOG00000019295	Rab12	60	36.000	ENSRNOG00000047960	Rab9b	74	36.000
ENSRNOG00000019295	Rab12	86	40.845	ENSRNOG00000007364	Rab15	88	43.915
ENSRNOG00000019295	Rab12	79	36.869	ENSRNOG00000013035	Rab33b	83	36.224
ENSRNOG00000019295	Rab12	64	40.764	ENSRNOG00000009198	Rab6b	75	40.764
ENSRNOG00000019295	Rab12	54	31.579	ENSRNOG00000050578	Rheb	72	31.579
ENSRNOG00000019295	Rab12	84	36.667	ENSRNOG00000011302	Rab11a	68	43.919
ENSRNOG00000019295	Rab12	64	41.401	ENSRNOG00000018176	Rab6a	75	41.401
ENSRNOG00000019295	Rab12	64	45.860	ENSRNOG00000005963	Rab2a	75	45.860
ENSRNOG00000019295	Rab12	86	36.792	ENSRNOG00000018901	Rab14	75	42.073
ENSRNOG00000019295	Rab12	65	50.625	ENSRNOG00000050510	LOC102555167	79	50.625
ENSRNOG00000019295	Rab12	60	52.381	ENSRNOG00000018972	Rab18	70	52.381
ENSRNOG00000019295	Rab12	71	36.994	ENSRNOG00000006130	Rab5b	80	36.994
ENSRNOG00000019295	Rab12	76	36.788	ENSRNOG00000006698	Rab33a	80	37.173
ENSRNOG00000019295	Rab12	65	51.250	ENSRNOG00000004992	Rab1a	81	49.704
ENSRNOG00000019295	Rab12	76	34.737	ENSRNOG00000012247	Rab7a	84	38.125
ENSRNOG00000019295	Rab12	67	51.534	ENSRNOG00000016733	Rab13	79	51.534
ENSRNOG00000019295	Rab12	67	33.333	ENSRNOG00000013947	Rabl2	60	33.974
ENSRNOG00000019295	Rab12	69	40.828	ENSRNOG00000023640	Rab25	78	40.828
ENSRNOG00000019295	Rab12	60	32.895	ENSRNOG00000030443	Rab9a	75	32.895
ENSRNOG00000019295	Rab12	65	42.767	ENSRNOG00000007648	Rab11b	72	42.767
ENSRNOG00000019295	Rab12	51	31.343	ENSRNOG00000006839	Arl5a	69	31.343
ENSRNOG00000019295	Rab12	51	30.469	ENSRNOG00000036880	Arl5c	69	30.469
ENSRNOG00000019295	Rab12	64	37.342	ENSRNOG00000005762	Rab22a	80	37.342
ENSRNOG00000019295	Rab12	84	38.785	ENSRNOG00000012488	Rab2b	80	43.931
ENSRNOG00000019295	Rab12	64	38.217	ENSRNOG00000042189	Rab31	79	38.217
ENSRNOG00000019295	Rab12	72	39.560	ENSRNOG00000018568	Rab5c	81	39.560
ENSRNOG00000019295	Rab12	66	38.182	ENSRNOG00000023375	Rab34	64	38.182

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019295	Rab12	100	88.259	ENSG00000206418	RAB12	100	89.069	Homo_sapiens
ENSRNOG00000019295	Rab12	91	83.556	ENSAMEG00000007452	RAB12	100	81.277	Ailuropoda_melanoleuca
ENSRNOG00000019295	Rab12	83	86.829	ENSACIG00000020616	rab12	93	82.096	Amphilophus_citrinellus
ENSRNOG00000019295	Rab12	91	82.018	ENSAOCG00000002130	rab12	93	82.456	Amphiprion_ocellaris
ENSRNOG00000019295	Rab12	91	82.018	ENSAPEG00000013255	rab12	93	82.456	Amphiprion_percula
ENSRNOG00000019295	Rab12	91	82.819	ENSATEG00000019683	rab12	93	83.260	Anabas_testudineus
ENSRNOG00000019295	Rab12	91	89.732	ENSACAG00000003360	RAB12	100	81.226	Anolis_carolinensis
ENSRNOG00000019295	Rab12	91	82.456	ENSACLG00000007696	rab12	93	82.895	Astatotilapia_calliptera
ENSRNOG00000019295	Rab12	84	84.466	ENSAMXG00000004882	rab12	93	78.355	Astyanax_mexicanus
ENSRNOG00000019295	Rab12	100	89.879	ENSBTAG00000010356	RAB12	100	90.688	Bos_taurus
ENSRNOG00000019295	Rab12	100	88.306	ENSCJAG00000015468	RAB12	72	88.710	Callithrix_jacchus
ENSRNOG00000019295	Rab12	100	88.664	ENSCAFG00020023721	RAB12	84	89.474	Canis_lupus_dingo
ENSRNOG00000019295	Rab12	100	89.879	ENSCHIG00000016103	RAB12	100	90.688	Capra_hircus
ENSRNOG00000019295	Rab12	87	90.610	ENSCPOG00000022689	RAB12	100	90.141	Cavia_porcellus
ENSRNOG00000019295	Rab12	100	88.306	ENSCCAG00000022862	RAB12	100	88.710	Cebus_capucinus
ENSRNOG00000019295	Rab12	92	91.189	ENSCATG00000037784	RAB12	97	89.873	Cercocebus_atys
ENSRNOG00000019295	Rab12	100	88.048	ENSCSAG00000017569	RAB12	72	87.649	Chlorocebus_sabaeus
ENSRNOG00000019295	Rab12	100	84.677	ENSCPBG00000028375	RAB12	100	84.274	Chrysemys_picta_bellii
ENSRNOG00000019295	Rab12	91	91.031	ENSCANG00000031453	RAB12	100	90.583	Colobus_angolensis_palliatus
ENSRNOG00000019295	Rab12	100	92.276	ENSCGRG00001006958	Rab12	83	91.870	Cricetulus_griseus_chok1gshd
ENSRNOG00000019295	Rab12	91	82.018	ENSCSEG00000016933	rab12	93	82.456	Cynoglossus_semilaevis
ENSRNOG00000019295	Rab12	83	86.341	ENSCVAG00000003539	rab12	93	80.519	Cyprinodon_variegatus
ENSRNOG00000019295	Rab12	91	80.000	ENSDARG00000089428	rab12	93	80.889	Danio_rerio
ENSRNOG00000019295	Rab12	100	89.431	ENSDNOG00000046064	RAB12	56	89.431	Dasypus_novemcinctus
ENSRNOG00000019295	Rab12	93	90.870	ENSDORG00000008920	Rab12	100	90.435	Dipodomys_ordii
ENSRNOG00000019295	Rab12	78	66.839	ENSEBUG00000006581	rab12	92	66.839	Eptatretus_burgeri
ENSRNOG00000019295	Rab12	100	90.244	ENSEASG00005002926	RAB12	83	89.837	Equus_asinus_asinus
ENSRNOG00000019295	Rab12	100	90.244	ENSECAG00000007384	RAB12	71	89.837	Equus_caballus
ENSRNOG00000019295	Rab12	100	78.049	ENSELUG00000007123	rab12	93	79.556	Esox_lucius
ENSRNOG00000019295	Rab12	100	88.664	ENSFCAG00000027710	RAB12	72	89.474	Felis_catus
ENSRNOG00000019295	Rab12	82	86.070	ENSFHEG00000004319	rab12	93	80.870	Fundulus_heteroclitus
ENSRNOG00000019295	Rab12	84	82.126	ENSGMOG00000012335	rab12	86	82.126	Gadus_morhua
ENSRNOG00000019295	Rab12	100	82.558	ENSGALG00000033608	RAB12	100	85.375	Gallus_gallus
ENSRNOG00000019295	Rab12	82	83.663	ENSGACG00000016639	rab12	97	82.160	Gasterosteus_aculeatus
ENSRNOG00000019295	Rab12	100	84.677	ENSGAGG00000007278	RAB12	100	84.274	Gopherus_agassizii
ENSRNOG00000019295	Rab12	91	82.456	ENSHBUG00000008497	rab12	93	82.895	Haplochromis_burtoni
ENSRNOG00000019295	Rab12	99	79.592	ENSHGLG00000006189	RAB12	98	80.000	Heterocephalus_glaber_female
ENSRNOG00000019295	Rab12	100	76.305	ENSHCOG00000012376	rab12	100	74.699	Hippocampus_comes
ENSRNOG00000019295	Rab12	84	84.466	ENSIPUG00000017401	rab12	93	79.039	Ictalurus_punctatus
ENSRNOG00000019295	Rab12	93	89.130	ENSSTOG00000025122	RAB12	100	88.696	Ictidomys_tridecemlineatus
ENSRNOG00000019295	Rab12	94	90.909	ENSJJAG00000019064	Rab12	100	90.476	Jaculus_jaculus
ENSRNOG00000019295	Rab12	91	80.444	ENSKMAG00000020056	rab12	93	80.889	Kryptolebias_marmoratus
ENSRNOG00000019295	Rab12	91	82.819	ENSLBEG00000013756	rab12	93	83.260	Labrus_bergylta
ENSRNOG00000019295	Rab12	92	86.283	ENSLACG00000010461	RAB12	92	81.818	Latimeria_chalumnae
ENSRNOG00000019295	Rab12	84	88.835	ENSLOCG00000002680	rab12	92	83.550	Lepisosteus_oculatus
ENSRNOG00000019295	Rab12	100	88.755	ENSMFAG00000043551	RAB12	100	88.353	Macaca_fascicularis
ENSRNOG00000019295	Rab12	92	91.189	ENSMNEG00000040853	RAB12	92	90.213	Macaca_nemestrina
ENSRNOG00000019295	Rab12	91	82.379	ENSMAMG00000006862	rab12	93	82.819	Mastacembelus_armatus
ENSRNOG00000019295	Rab12	91	82.456	ENSMZEG00005024316	rab12	93	82.895	Maylandia_zebra
ENSRNOG00000019295	Rab12	84	90.338	ENSMGAG00000009197	RAB12	100	89.372	Meleagris_gallopavo
ENSRNOG00000019295	Rab12	100	91.870	ENSMAUG00000008371	Rab12	83	91.463	Mesocricetus_auratus
ENSRNOG00000019295	Rab12	92	90.308	ENSMICG00000030661	RAB12	99	88.285	Microcebus_murinus
ENSRNOG00000019295	Rab12	90	90.991	ENSMOCG00000000452	Rab12	100	90.541	Microtus_ochrogaster
ENSRNOG00000019295	Rab12	100	87.550	ENSMODG00000021452	RAB12	73	87.649	Monodelphis_domestica
ENSRNOG00000019295	Rab12	92	83.260	ENSMALG00000015762	rab12	93	81.938	Monopterus_albus
ENSRNOG00000019295	Rab12	100	92.276	MGP_CAROLIEiJ_G0021839	Rab12	84	91.870	Mus_caroli
ENSRNOG00000019295	Rab12	100	92.276	ENSMUSG00000023460	Rab12	100	91.870	Mus_musculus
ENSRNOG00000019295	Rab12	100	92.276	MGP_PahariEiJ_G0020826	Rab12	100	91.870	Mus_pahari
ENSRNOG00000019295	Rab12	100	92.276	MGP_SPRETEiJ_G0022750	Rab12	83	91.870	Mus_spretus
ENSRNOG00000019295	Rab12	100	89.431	ENSMLUG00000002883	RAB12	100	89.024	Myotis_lucifugus
ENSRNOG00000019295	Rab12	100	78.862	ENSNGAG00000019722	-	100	78.455	Nannospalax_galili
ENSRNOG00000019295	Rab12	94	89.224	ENSNGAG00000024103	-	98	89.224	Nannospalax_galili
ENSRNOG00000019295	Rab12	91	82.456	ENSNBRG00000014428	rab12	93	82.895	Neolamprologus_brichardi
ENSRNOG00000019295	Rab12	100	88.259	ENSNLEG00000006939	RAB12	100	88.664	Nomascus_leucogenys
ENSRNOG00000019295	Rab12	100	87.952	ENSMEUG00000000493	RAB12	100	87.550	Notamacropus_eugenii
ENSRNOG00000019295	Rab12	85	91.388	ENSODEG00000006414	RAB12	100	90.090	Octodon_degus
ENSRNOG00000019295	Rab12	91	82.456	ENSONIG00000018469	rab12	93	82.895	Oreochromis_niloticus
ENSRNOG00000019295	Rab12	91	82.379	ENSORLG00000003902	rab12	93	82.819	Oryzias_latipes
ENSRNOG00000019295	Rab12	91	82.379	ENSORLG00020005131	rab12	93	82.819	Oryzias_latipes_hni
ENSRNOG00000019295	Rab12	91	81.938	ENSORLG00015007869	rab12	93	82.379	Oryzias_latipes_hsok
ENSRNOG00000019295	Rab12	91	82.379	ENSOMEG00000008191	rab12	93	82.819	Oryzias_melastigma
ENSRNOG00000019295	Rab12	87	90.610	ENSOGAG00000028002	RAB12	99	90.141	Otolemur_garnettii
ENSRNOG00000019295	Rab12	87	90.141	ENSOARG00000000728	RAB12	96	84.810	Ovis_aries
ENSRNOG00000019295	Rab12	85	90.952	ENSPPAG00000009152	RAB12	97	90.431	Pan_paniscus
ENSRNOG00000019295	Rab12	100	88.664	ENSPPRG00000024521	RAB12	100	89.474	Panthera_pardus
ENSRNOG00000019295	Rab12	100	88.259	ENSPTRG00000009853	RAB12	100	89.069	Pan_troglodytes
ENSRNOG00000019295	Rab12	100	88.800	ENSPANG00000009320	RAB12	100	88.400	Papio_anubis
ENSRNOG00000019295	Rab12	78	89.529	ENSPKIG00000008579	rab12	93	85.778	Paramormyrops_kingsleyae
ENSRNOG00000019295	Rab12	90	81.448	ENSPMGG00000001890	rab12	93	80.617	Periophthalmus_magnuspinnatus
ENSRNOG00000019295	Rab12	100	92.276	ENSPEMG00000021032	Rab12	84	91.870	Peromyscus_maniculatus_bairdii
ENSRNOG00000019295	Rab12	100	87.952	ENSPCIG00000010453	RAB12	61	87.251	Phascolarctos_cinereus
ENSRNOG00000019295	Rab12	91	79.913	ENSPFOG00000001579	rab12	93	80.786	Poecilia_formosa
ENSRNOG00000019295	Rab12	91	79.913	ENSPLAG00000013594	rab12	93	80.786	Poecilia_latipinna
ENSRNOG00000019295	Rab12	91	79.913	ENSPMEG00000010417	rab12	93	80.786	Poecilia_mexicana
ENSRNOG00000019295	Rab12	91	79.913	ENSPREG00000017487	rab12	93	80.786	Poecilia_reticulata
ENSRNOG00000019295	Rab12	100	88.259	ENSPPYG00000009015	-	72	89.069	Pongo_abelii
ENSRNOG00000019295	Rab12	100	88.664	ENSPCAG00000015007	RAB12	100	89.879	Procavia_capensis
ENSRNOG00000019295	Rab12	100	88.259	ENSPCOG00000019816	RAB12	100	89.069	Propithecus_coquereli
ENSRNOG00000019295	Rab12	100	88.259	ENSPVAG00000002757	RAB12	100	89.069	Pteropus_vampyrus
ENSRNOG00000019295	Rab12	91	82.456	ENSPNYG00000023905	rab12	93	82.895	Pundamilia_nyererei
ENSRNOG00000019295	Rab12	100	74.297	ENSPNYG00000005654	rab12	93	82.895	Pundamilia_nyererei
ENSRNOG00000019295	Rab12	84	85.922	ENSPNAG00000015031	rab12	86	84.507	Pygocentrus_nattereri
ENSRNOG00000019295	Rab12	92	91.189	ENSRBIG00000028760	RAB12	99	90.213	Rhinopithecus_bieti
ENSRNOG00000019295	Rab12	94	90.909	ENSRROG00000019249	RAB12	95	90.476	Rhinopithecus_roxellana
ENSRNOG00000019295	Rab12	87	89.767	ENSSBOG00000021125	RAB12	88	83.193	Saimiri_boliviensis_boliviensis
ENSRNOG00000019295	Rab12	91	88.987	ENSSHAG00000001489	RAB12	100	88.987	Sarcophilus_harrisii
ENSRNOG00000019295	Rab12	82	86.070	ENSSMAG00000012678	rab12	93	82.379	Scophthalmus_maximus
ENSRNOG00000019295	Rab12	91	82.819	ENSSDUG00000008505	rab12	93	83.260	Seriola_dumerili
ENSRNOG00000019295	Rab12	91	82.819	ENSSLDG00000022239	rab12	93	83.260	Seriola_lalandi_dorsalis
ENSRNOG00000019295	Rab12	100	84.337	ENSSPUG00000003222	RAB12	100	85.944	Sphenodon_punctatus
ENSRNOG00000019295	Rab12	91	82.456	ENSSPAG00000010822	rab12	93	82.895	Stegastes_partitus
ENSRNOG00000019295	Rab12	100	89.879	ENSSSCG00000038026	RAB12	100	90.283	Sus_scrofa
ENSRNOG00000019295	Rab12	93	90.000	ENSTGUG00000009889	RAB12	100	85.375	Taeniopygia_guttata
ENSRNOG00000019295	Rab12	100	80.242	ENSTRUG00000024455	rab12	93	81.938	Takifugu_rubripes
ENSRNOG00000019295	Rab12	91	80.617	ENSTNIG00000014859	rab12	93	80.617	Tetraodon_nigroviridis
ENSRNOG00000019295	Rab12	91	90.667	ENSTTRG00000008711	RAB12	100	90.222	Tursiops_truncatus
ENSRNOG00000019295	Rab12	100	88.664	ENSUAMG00000018092	RAB12	100	89.474	Ursus_americanus
ENSRNOG00000019295	Rab12	90	90.991	ENSVVUG00000011748	RAB12	99	90.541	Vulpes_vulpes
ENSRNOG00000019295	Rab12	87	90.233	ENSXETG00000004289	rab12	69	90.233	Xenopus_tropicalis
ENSRNOG00000019295	Rab12	100	79.200	ENSXCOG00000019310	rab12	93	81.659	Xiphophorus_couchianus
ENSRNOG00000019295	Rab12	91	80.786	ENSXMAG00000023617	rab12	93	81.659	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005525	GTP binding	8575079.	TAS	Function
GO:0005764	lysosome	-	ISO	Component
GO:0005764	lysosome	-	ISS	Component
GO:0005765	lysosomal membrane	-	IEA	Component
GO:0005776	autophagosome	-	IEA	Component
GO:0005776	autophagosome	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005802	trans-Golgi network	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006914	autophagy	-	IEA	Process
GO:0008333	endosome to lysosome transport	-	ISO	Process
GO:0008333	endosome to lysosome transport	-	ISS	Process
GO:0016239	positive regulation of macroautophagy	-	ISO	Process
GO:0019003	GDP binding	-	ISO	Function
GO:0019003	GDP binding	-	ISS	Function
GO:0030141	secretory granule	8575079.	IDA	Component
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0044257	cellular protein catabolic process	-	ISO	Process
GO:0044257	cellular protein catabolic process	-	ISS	Process
GO:0045335	phagocytic vesicle	-	ISO	Component
GO:0055038	recycling endosome membrane	-	ISO	Component
GO:0055038	recycling endosome membrane	-	ISS	Component
GO:0071346	cellular response to interferon-gamma	-	ISO	Process