EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019349 (Gene tree)
Gene ID: 299620
Gene Symbol: Sf3a2
Alias: LOC299620
Full Name: splicing factor 3a%2C subunit 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 6024 bases
Position: chr7:11777826-11783849
Accession: 1308627
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026202	zf-met	PF12874.7	8.9e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026202	-	1607	XM_006240885	ENSRNOP00000026202	471 (aa)	XP_006240947	Q6AXT8

Gene Model

Click here to download ENSRNOG00000019349's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019349's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019349	Sf3a2	51	99.163	ENSG00000104897	SF3A2	100	99.259	Homo_sapiens
ENSRNOG00000019349	Sf3a2	52	89.754	ENSAPOG00000003916	sf3a2	73	94.907	Acanthochromis_polyacanthus
ENSRNOG00000019349	Sf3a2	93	85.839	ENSAMEG00000005469	SF3A2	52	99.582	Ailuropoda_melanoleuca
ENSRNOG00000019349	Sf3a2	51	90.417	ENSACIG00000018153	sf3a2	73	94.907	Amphilophus_citrinellus
ENSRNOG00000019349	Sf3a2	52	89.754	ENSAOCG00000015960	sf3a2	73	94.907	Amphiprion_ocellaris
ENSRNOG00000019349	Sf3a2	52	89.754	ENSAPEG00000012336	sf3a2	73	94.907	Amphiprion_percula
ENSRNOG00000019349	Sf3a2	52	90.574	ENSATEG00000015449	sf3a2	76	92.889	Anabas_testudineus
ENSRNOG00000019349	Sf3a2	55	87.739	ENSACLG00000002356	sf3a2	77	93.333	Astatotilapia_calliptera
ENSRNOG00000019349	Sf3a2	52	91.020	ENSAMXG00000032428	sf3a2	74	93.694	Astyanax_mexicanus
ENSRNOG00000019349	Sf3a2	51	99.582	ENSBTAG00000025452	SF3A2	86	99.582	Bos_taurus
ENSRNOG00000019349	Sf3a2	51	99.163	ENSCJAG00000013206	-	52	99.163	Callithrix_jacchus
ENSRNOG00000019349	Sf3a2	93	88.453	ENSCAFG00000019414	SF3A2	50	99.582	Canis_familiaris
ENSRNOG00000019349	Sf3a2	93	88.453	ENSCAFG00020018153	SF3A2	50	99.582	Canis_lupus_dingo
ENSRNOG00000019349	Sf3a2	51	99.582	ENSCHIG00000018323	SF3A2	86	99.582	Capra_hircus
ENSRNOG00000019349	Sf3a2	51	99.582	ENSCPOG00000032868	SF3A2	53	99.582	Cavia_porcellus
ENSRNOG00000019349	Sf3a2	51	99.163	ENSCCAG00000009812	SF3A2	87	98.378	Cebus_capucinus
ENSRNOG00000019349	Sf3a2	51	99.163	ENSCATG00000038453	SF3A2	52	99.163	Cercocebus_atys
ENSRNOG00000019349	Sf3a2	51	99.582	ENSCLAG00000008987	SF3A2	53	99.582	Chinchilla_lanigera
ENSRNOG00000019349	Sf3a2	51	99.163	ENSCSAG00000011717	SF3A2	51	99.163	Chlorocebus_sabaeus
ENSRNOG00000019349	Sf3a2	52	95.102	ENSCPBG00000018569	SF3A2	72	97.345	Chrysemys_picta_bellii
ENSRNOG00000019349	Sf3a2	51	99.163	ENSCANG00000024451	SF3A2	52	99.163	Colobus_angolensis_palliatus
ENSRNOG00000019349	Sf3a2	100	94.845	ENSCGRG00001001802	Sf3a2	100	94.845	Cricetulus_griseus_chok1gshd
ENSRNOG00000019349	Sf3a2	100	94.845	ENSCGRG00000011089	Sf3a2	100	94.845	Cricetulus_griseus_crigri
ENSRNOG00000019349	Sf3a2	56	85.606	ENSCSEG00000014308	sf3a2	79	92.857	Cynoglossus_semilaevis
ENSRNOG00000019349	Sf3a2	51	89.583	ENSCVAG00000021349	sf3a2	73	95.370	Cyprinodon_variegatus
ENSRNOG00000019349	Sf3a2	52	89.796	ENSDARG00000021107	sf3a2	81	93.304	Danio_rerio
ENSRNOG00000019349	Sf3a2	93	92.237	ENSDORG00000014445	Sf3a2	52	99.163	Dipodomys_ordii
ENSRNOG00000019349	Sf3a2	62	68.136	FBgn0036314	Sf3a2	86	81.938	Drosophila_melanogaster
ENSRNOG00000019349	Sf3a2	70	100.000	ENSETEG00000016949	-	57	100.000	Echinops_telfairi
ENSRNOG00000019349	Sf3a2	51	99.582	ENSEASG00005021972	SF3A2	52	99.582	Equus_asinus_asinus
ENSRNOG00000019349	Sf3a2	51	92.116	ENSELUG00000008471	sf3a2	74	93.778	Esox_lucius
ENSRNOG00000019349	Sf3a2	100	91.325	ENSFCAG00000030476	SF3A2	55	100.000	Felis_catus
ENSRNOG00000019349	Sf3a2	51	90.000	ENSFHEG00000002392	sf3a2	74	94.907	Fundulus_heteroclitus
ENSRNOG00000019349	Sf3a2	51	89.627	ENSGMOG00000012186	sf3a2	72	94.907	Gadus_morhua
ENSRNOG00000019349	Sf3a2	52	92.653	ENSGALG00000021679	SF3A2	72	96.903	Gallus_gallus
ENSRNOG00000019349	Sf3a2	52	90.612	ENSGACG00000015255	sf3a2	74	95.833	Gasterosteus_aculeatus
ENSRNOG00000019349	Sf3a2	51	99.163	ENSGGOG00000006613	SF3A2	52	99.163	Gorilla_gorilla
ENSRNOG00000019349	Sf3a2	55	87.739	ENSHBUG00000021796	sf3a2	77	93.333	Haplochromis_burtoni
ENSRNOG00000019349	Sf3a2	95	91.017	ENSHGLG00000015102	SF3A2	88	99.454	Heterocephalus_glaber_female
ENSRNOG00000019349	Sf3a2	93	99.588	ENSHGLG00100000418	SF3A2	88	99.454	Heterocephalus_glaber_male
ENSRNOG00000019349	Sf3a2	56	87.072	ENSHCOG00000001223	sf3a2	77	93.304	Hippocampus_comes
ENSRNOG00000019349	Sf3a2	52	89.344	ENSIPUG00000019071	sf3a2	72	94.907	Ictalurus_punctatus
ENSRNOG00000019349	Sf3a2	51	99.582	ENSSTOG00000007495	SF3A2	90	90.710	Ictidomys_tridecemlineatus
ENSRNOG00000019349	Sf3a2	51	99.163	ENSJJAG00000010635	Sf3a2	96	98.378	Jaculus_jaculus
ENSRNOG00000019349	Sf3a2	53	86.056	ENSKMAG00000006295	sf3a2	73	94.907	Kryptolebias_marmoratus
ENSRNOG00000019349	Sf3a2	52	90.984	ENSLBEG00000000677	sf3a2	76	93.333	Labrus_bergylta
ENSRNOG00000019349	Sf3a2	52	91.837	ENSLACG00000008744	SF3A2	72	95.133	Latimeria_chalumnae
ENSRNOG00000019349	Sf3a2	51	99.163	ENSMFAG00000002638	SF3A2	52	99.163	Macaca_fascicularis
ENSRNOG00000019349	Sf3a2	51	99.163	ENSMMUG00000010111	SF3A2	52	99.163	Macaca_mulatta
ENSRNOG00000019349	Sf3a2	51	99.163	ENSMNEG00000036916	SF3A2	51	99.163	Macaca_nemestrina
ENSRNOG00000019349	Sf3a2	52	89.754	ENSMAMG00000009881	sf3a2	76	92.857	Mastacembelus_armatus
ENSRNOG00000019349	Sf3a2	55	87.739	ENSMZEG00005025609	sf3a2	77	93.333	Maylandia_zebra
ENSRNOG00000019349	Sf3a2	52	92.653	ENSMGAG00000001950	SF3A2	72	96.903	Meleagris_gallopavo
ENSRNOG00000019349	Sf3a2	51	99.163	ENSMICG00000015443	SF3A2	52	99.163	Microcebus_murinus
ENSRNOG00000019349	Sf3a2	100	95.541	ENSMOCG00000007216	Sf3a2	100	95.541	Microtus_ochrogaster
ENSRNOG00000019349	Sf3a2	55	79.389	ENSMMOG00000010657	sf3a2	85	81.250	Mola_mola
ENSRNOG00000019349	Sf3a2	52	90.164	ENSMALG00000020442	sf3a2	73	94.444	Monopterus_albus
ENSRNOG00000019349	Sf3a2	100	96.495	MGP_CAROLIEiJ_G0015602	-	100	96.495	Mus_caroli
ENSRNOG00000019349	Sf3a2	100	96.495	ENSMUSG00000020211	Sf3a2	100	96.495	Mus_musculus
ENSRNOG00000019349	Sf3a2	100	93.788	MGP_PahariEiJ_G0031015	-	94	99.451	Mus_pahari
ENSRNOG00000019349	Sf3a2	100	96.289	MGP_SPRETEiJ_G0016420	-	100	96.289	Mus_spretus
ENSRNOG00000019349	Sf3a2	88	87.844	ENSMPUG00000006956	SF3A2	52	99.582	Mustela_putorius_furo
ENSRNOG00000019349	Sf3a2	94	90.220	ENSMLUG00000004426	-	54	99.163	Myotis_lucifugus
ENSRNOG00000019349	Sf3a2	51	91.250	ENSNBRG00000019872	sf3a2	77	93.333	Neolamprologus_brichardi
ENSRNOG00000019349	Sf3a2	51	90.833	ENSONIG00000010198	sf3a2	77	92.889	Oreochromis_niloticus
ENSRNOG00000019349	Sf3a2	56	85.338	ENSORLG00000015301	sf3a2	74	93.981	Oryzias_latipes
ENSRNOG00000019349	Sf3a2	56	85.338	ENSORLG00020017235	sf3a2	74	93.981	Oryzias_latipes_hni
ENSRNOG00000019349	Sf3a2	51	89.167	ENSORLG00015017116	sf3a2	74	93.981	Oryzias_latipes_hsok
ENSRNOG00000019349	Sf3a2	88	89.474	ENSOGAG00000033389	SF3A2	52	99.163	Otolemur_garnettii
ENSRNOG00000019349	Sf3a2	88	92.895	ENSOARG00000014357	SF3A2	84	99.582	Ovis_aries
ENSRNOG00000019349	Sf3a2	100	75.355	ENSPPAG00000037864	-	50	84.519	Pan_paniscus
ENSRNOG00000019349	Sf3a2	93	86.275	ENSPPRG00000007798	SF3A2	51	100.000	Panthera_pardus
ENSRNOG00000019349	Sf3a2	93	67.416	ENSPTRG00000010227	SF3A2	91	69.369	Pan_troglodytes
ENSRNOG00000019349	Sf3a2	51	99.163	ENSPANG00000007949	SF3A2	52	99.163	Papio_anubis
ENSRNOG00000019349	Sf3a2	52	92.213	ENSPKIG00000009487	sf3a2	71	93.778	Paramormyrops_kingsleyae
ENSRNOG00000019349	Sf3a2	52	93.927	ENSPSIG00000010839	SF3A2	72	96.053	Pelodiscus_sinensis
ENSRNOG00000019349	Sf3a2	100	94.351	ENSPEMG00000021288	Sf3a2	100	94.351	Peromyscus_maniculatus_bairdii
ENSRNOG00000019349	Sf3a2	51	99.163	ENSPPYG00000009342	SF3A2	52	99.163	Pongo_abelii
ENSRNOG00000019349	Sf3a2	82	99.163	ENSPCOG00000020295	SF3A2	53	99.163	Propithecus_coquereli
ENSRNOG00000019349	Sf3a2	55	87.739	ENSPNYG00000006928	sf3a2	77	93.333	Pundamilia_nyererei
ENSRNOG00000019349	Sf3a2	52	90.164	ENSPNAG00000027582	sf3a2	72	95.370	Pygocentrus_nattereri
ENSRNOG00000019349	Sf3a2	94	81.208	ENSRBIG00000026709	SF3A2	61	99.163	Rhinopithecus_bieti
ENSRNOG00000019349	Sf3a2	51	99.163	ENSRROG00000034440	SF3A2	51	99.163	Rhinopithecus_roxellana
ENSRNOG00000019349	Sf3a2	93	82.921	ENSSBOG00000026071	SF3A2	92	84.910	Saimiri_boliviensis_boliviensis
ENSRNOG00000019349	Sf3a2	52	98.381	ENSSHAG00000011677	-	100	98.381	Sarcophilus_harrisii
ENSRNOG00000019349	Sf3a2	55	89.575	ENSSFOG00015010920	sf3a2	64	92.478	Scleropages_formosus
ENSRNOG00000019349	Sf3a2	51	91.250	ENSSMAG00000002629	sf3a2	75	95.370	Scophthalmus_maximus
ENSRNOG00000019349	Sf3a2	53	89.243	ENSSDUG00000015810	sf3a2	77	92.889	Seriola_dumerili
ENSRNOG00000019349	Sf3a2	53	89.243	ENSSLDG00000010874	sf3a2	78	92.105	Seriola_lalandi_dorsalis
ENSRNOG00000019349	Sf3a2	52	90.164	ENSSPAG00000004960	sf3a2	77	91.667	Stegastes_partitus
ENSRNOG00000019349	Sf3a2	51	98.745	ENSSSCG00000039757	SF3A2	52	98.745	Sus_scrofa
ENSRNOG00000019349	Sf3a2	50	90.295	ENSTRUG00000009045	sf3a2	75	94.907	Takifugu_rubripes
ENSRNOG00000019349	Sf3a2	51	89.256	ENSTNIG00000015318	sf3a2	75	94.444	Tetraodon_nigroviridis
ENSRNOG00000019349	Sf3a2	51	84.100	ENSTTRG00000010177	-	52	84.100	Tursiops_truncatus
ENSRNOG00000019349	Sf3a2	93	88.453	ENSVVUG00000002578	SF3A2	50	99.582	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	-	ISO	Component
GO:0005686	U2 snRNP	-	ISS	Component
GO:0006397	mRNA processing	-	ISO	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010976	positive regulation of neuron projection development	15653435.	IDA	Process
GO:0016607	nuclear speck	9016565.	IDA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:1903241	U2-type prespliceosome assembly	-	ISO	Process
GO:1903241	U2-type prespliceosome assembly	-	ISS	Process