EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019552 (Gene tree)
Gene ID: 362829
Gene Symbol: Lsm7
Alias: LOC362829
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 2427 bases
Position: chr7:11724962-11727388
Accession: 1305354
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026551	LSM	PF01423.22	3.8e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026551	-	488	XM_006240958	ENSRNOP00000026551	103 (aa)	XP_006241020	D4A2D8

Gene Model

Click here to download ENSRNOG00000019552's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000019552	Lsm7	68	34.286	ENSRNOG00000058521	AABR07042226.1	82	34.286
ENSRNOG00000019552	Lsm7	72	35.526	ENSRNOG00000058677	Lsm8	73	35.526
ENSRNOG00000019552	Lsm7	69	36.620	ENSRNOG00000016507	LOC687679	83	36.620
ENSRNOG00000019552	Lsm7	69	36.620	ENSRNOG00000032232	Snrpg	83	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019552	Lsm7	100	98.058	ENSG00000130332	LSM7	100	98.058	Homo_sapiens
ENSRNOG00000019552	Lsm7	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSRNOG00000019552	Lsm7	100	95.146	ENSAMEG00000005484	LSM7	100	95.146	Ailuropoda_melanoleuca
ENSRNOG00000019552	Lsm7	95	93.878	ENSACIG00000006498	lsm7	78	93.878	Amphilophus_citrinellus
ENSRNOG00000019552	Lsm7	97	95.000	ENSAOCG00000001077	lsm7	91	95.000	Amphiprion_ocellaris
ENSRNOG00000019552	Lsm7	99	93.137	ENSAPEG00000024447	lsm7	91	95.000	Amphiprion_percula
ENSRNOG00000019552	Lsm7	99	95.098	ENSAPEG00000000694	lsm7	99	95.098	Amphiprion_percula
ENSRNOG00000019552	Lsm7	99	95.098	ENSATEG00000008557	lsm7	99	95.098	Anabas_testudineus
ENSRNOG00000019552	Lsm7	100	89.320	ENSANAG00000022222	-	100	89.320	Aotus_nancymaae
ENSRNOG00000019552	Lsm7	100	98.058	ENSANAG00000037196	-	100	98.058	Aotus_nancymaae
ENSRNOG00000019552	Lsm7	99	94.118	ENSACLG00000021021	lsm7	99	94.118	Astatotilapia_calliptera
ENSRNOG00000019552	Lsm7	99	95.098	ENSAMXG00000037622	lsm7	99	95.098	Astyanax_mexicanus
ENSRNOG00000019552	Lsm7	100	98.058	ENSBTAG00000004521	LSM7	100	98.058	Bos_taurus
ENSRNOG00000019552	Lsm7	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSRNOG00000019552	Lsm7	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSRNOG00000019552	Lsm7	98	97.030	ENSCAFG00000019409	LSM7	98	97.030	Canis_familiaris
ENSRNOG00000019552	Lsm7	98	97.030	ENSCAFG00020018168	LSM7	74	97.030	Canis_lupus_dingo
ENSRNOG00000019552	Lsm7	100	96.117	ENSCHIG00000023663	LSM7	100	96.117	Capra_hircus
ENSRNOG00000019552	Lsm7	69	97.183	ENSCAPG00000014534	LSM7	100	97.183	Cavia_aperea
ENSRNOG00000019552	Lsm7	100	98.058	ENSCPOG00000014025	LSM7	100	98.058	Cavia_porcellus
ENSRNOG00000019552	Lsm7	98	98.020	ENSCCAG00000035456	LSM7	99	98.020	Cebus_capucinus
ENSRNOG00000019552	Lsm7	100	98.058	ENSCATG00000023543	LSM7	100	98.058	Cercocebus_atys
ENSRNOG00000019552	Lsm7	100	98.058	ENSCLAG00000011635	LSM7	100	98.058	Chinchilla_lanigera
ENSRNOG00000019552	Lsm7	100	98.058	ENSCSAG00000011599	LSM7	100	98.058	Chlorocebus_sabaeus
ENSRNOG00000019552	Lsm7	69	94.366	ENSCPBG00000021317	LSM7	76	94.366	Chrysemys_picta_bellii
ENSRNOG00000019552	Lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSRNOG00000019552	Lsm7	100	98.058	ENSCANG00000035525	LSM7	100	98.058	Colobus_angolensis_palliatus
ENSRNOG00000019552	Lsm7	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSRNOG00000019552	Lsm7	100	99.029	ENSCGRG00001000807	-	100	99.029	Cricetulus_griseus_chok1gshd
ENSRNOG00000019552	Lsm7	98	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSRNOG00000019552	Lsm7	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSRNOG00000019552	Lsm7	97	95.000	ENSCSEG00000014900	lsm7	85	95.000	Cynoglossus_semilaevis
ENSRNOG00000019552	Lsm7	97	96.000	ENSCVAG00000021091	lsm7	93	96.000	Cyprinodon_variegatus
ENSRNOG00000019552	Lsm7	99	95.098	ENSDARG00000058328	lsm7	99	95.098	Danio_rerio
ENSRNOG00000019552	Lsm7	99	96.078	ENSDORG00000024460	Lsm7	100	96.078	Dipodomys_ordii
ENSRNOG00000019552	Lsm7	94	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
ENSRNOG00000019552	Lsm7	98	95.050	ENSETEG00000012788	LSM7	99	95.050	Echinops_telfairi
ENSRNOG00000019552	Lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSRNOG00000019552	Lsm7	99	86.275	ENSEBUG00000016992	lsm7	98	86.275	Eptatretus_burgeri
ENSRNOG00000019552	Lsm7	100	96.117	ENSECAG00000001440	LSM7	66	96.117	Equus_caballus
ENSRNOG00000019552	Lsm7	100	97.087	ENSFCAG00000003445	LSM7	100	97.087	Felis_catus
ENSRNOG00000019552	Lsm7	97	97.000	ENSFALG00000011912	LSM7	99	97.000	Ficedula_albicollis
ENSRNOG00000019552	Lsm7	93	97.917	ENSFDAG00000007661	LSM7	100	97.917	Fukomys_damarensis
ENSRNOG00000019552	Lsm7	88	95.604	ENSFHEG00000006349	lsm7	89	96.000	Fundulus_heteroclitus
ENSRNOG00000019552	Lsm7	99	93.137	ENSGMOG00000013320	lsm7	99	93.137	Gadus_morhua
ENSRNOG00000019552	Lsm7	99	96.078	ENSGAFG00000013902	lsm7	99	96.078	Gambusia_affinis
ENSRNOG00000019552	Lsm7	99	94.118	ENSGACG00000010390	lsm7	99	94.118	Gasterosteus_aculeatus
ENSRNOG00000019552	Lsm7	100	98.058	ENSGGOG00000010172	LSM7	100	98.058	Gorilla_gorilla
ENSRNOG00000019552	Lsm7	99	94.118	ENSHBUG00000004616	lsm7	99	94.118	Haplochromis_burtoni
ENSRNOG00000019552	Lsm7	100	98.058	ENSHGLG00000010587	LSM7	100	98.058	Heterocephalus_glaber_female
ENSRNOG00000019552	Lsm7	100	98.058	ENSHGLG00100000852	LSM7	100	98.058	Heterocephalus_glaber_male
ENSRNOG00000019552	Lsm7	97	94.000	ENSHCOG00000020252	lsm7	99	94.000	Hippocampus_comes
ENSRNOG00000019552	Lsm7	99	97.059	ENSIPUG00000024724	lsm7	99	97.059	Ictalurus_punctatus
ENSRNOG00000019552	Lsm7	98	98.020	ENSSTOG00000028372	LSM7	99	98.020	Ictidomys_tridecemlineatus
ENSRNOG00000019552	Lsm7	98	100.000	ENSJJAG00000001936	Lsm7	98	100.000	Jaculus_jaculus
ENSRNOG00000019552	Lsm7	99	96.078	ENSKMAG00000022151	lsm7	99	96.078	Kryptolebias_marmoratus
ENSRNOG00000019552	Lsm7	99	94.118	ENSLBEG00000005203	lsm7	99	94.118	Labrus_bergylta
ENSRNOG00000019552	Lsm7	99	97.059	ENSLACG00000015700	LSM7	99	97.059	Latimeria_chalumnae
ENSRNOG00000019552	Lsm7	99	96.078	ENSLOCG00000004356	lsm7	99	96.078	Lepisosteus_oculatus
ENSRNOG00000019552	Lsm7	98	98.020	ENSLAFG00000029302	LSM7	98	98.020	Loxodonta_africana
ENSRNOG00000019552	Lsm7	100	98.058	ENSMFAG00000044572	LSM7	100	98.058	Macaca_fascicularis
ENSRNOG00000019552	Lsm7	100	98.058	ENSMMUG00000000452	LSM7	100	98.058	Macaca_mulatta
ENSRNOG00000019552	Lsm7	100	98.058	ENSMNEG00000004393	LSM7	100	98.058	Macaca_nemestrina
ENSRNOG00000019552	Lsm7	100	98.058	ENSMLEG00000030852	LSM7	100	98.058	Mandrillus_leucophaeus
ENSRNOG00000019552	Lsm7	99	94.118	ENSMAMG00000005410	lsm7	99	94.118	Mastacembelus_armatus
ENSRNOG00000019552	Lsm7	99	94.118	ENSMZEG00005028055	lsm7	99	94.118	Maylandia_zebra
ENSRNOG00000019552	Lsm7	99	98.039	ENSMGAG00000000750	LSM7	88	98.039	Meleagris_gallopavo
ENSRNOG00000019552	Lsm7	100	99.029	ENSMAUG00000009276	Lsm7	100	99.029	Mesocricetus_auratus
ENSRNOG00000019552	Lsm7	100	97.087	ENSMICG00000009988	-	100	97.087	Microcebus_murinus
ENSRNOG00000019552	Lsm7	100	98.058	ENSMICG00000028619	-	100	98.058	Microcebus_murinus
ENSRNOG00000019552	Lsm7	100	99.029	ENSMOCG00000016925	Lsm7	100	99.029	Microtus_ochrogaster
ENSRNOG00000019552	Lsm7	99	95.098	ENSMMOG00000019645	lsm7	97	95.098	Mola_mola
ENSRNOG00000019552	Lsm7	99	99.020	ENSMODG00000004722	LSM7	99	99.020	Monodelphis_domestica
ENSRNOG00000019552	Lsm7	99	94.118	ENSMALG00000014511	lsm7	78	94.118	Monopterus_albus
ENSRNOG00000019552	Lsm7	100	99.029	MGP_CAROLIEiJ_G0015607	Lsm7	100	99.029	Mus_caroli
ENSRNOG00000019552	Lsm7	100	99.029	ENSMUSG00000035215	Lsm7	100	99.029	Mus_musculus
ENSRNOG00000019552	Lsm7	100	99.029	MGP_PahariEiJ_G0031020	Lsm7	100	99.029	Mus_pahari
ENSRNOG00000019552	Lsm7	100	99.029	MGP_SPRETEiJ_G0016425	Lsm7	100	99.029	Mus_spretus
ENSRNOG00000019552	Lsm7	100	91.262	ENSMLUG00000024002	-	94	91.262	Myotis_lucifugus
ENSRNOG00000019552	Lsm7	100	95.146	ENSMLUG00000013097	-	100	95.146	Myotis_lucifugus
ENSRNOG00000019552	Lsm7	100	98.058	ENSNGAG00000021637	Lsm7	100	98.058	Nannospalax_galili
ENSRNOG00000019552	Lsm7	90	94.624	ENSNBRG00000001237	-	82	92.157	Neolamprologus_brichardi
ENSRNOG00000019552	Lsm7	97	94.000	ENSNBRG00000015770	lsm7	86	94.000	Neolamprologus_brichardi
ENSRNOG00000019552	Lsm7	100	98.058	ENSNLEG00000002265	LSM7	100	98.058	Nomascus_leucogenys
ENSRNOG00000019552	Lsm7	100	91.262	ENSODEG00000018769	-	100	91.262	Octodon_degus
ENSRNOG00000019552	Lsm7	100	98.058	ENSODEG00000013590	-	100	98.058	Octodon_degus
ENSRNOG00000019552	Lsm7	100	77.670	ENSODEG00000008190	-	100	77.670	Octodon_degus
ENSRNOG00000019552	Lsm7	99	94.118	ENSONIG00000001801	lsm7	88	94.118	Oreochromis_niloticus
ENSRNOG00000019552	Lsm7	99	95.098	ENSORLG00000023951	lsm7	99	95.098	Oryzias_latipes
ENSRNOG00000019552	Lsm7	99	95.098	ENSORLG00020022226	lsm7	99	95.098	Oryzias_latipes_hni
ENSRNOG00000019552	Lsm7	99	93.137	ENSORLG00015020044	lsm7	93	95.000	Oryzias_latipes_hsok
ENSRNOG00000019552	Lsm7	99	95.098	ENSOMEG00000012806	lsm7	99	95.098	Oryzias_melastigma
ENSRNOG00000019552	Lsm7	98	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSRNOG00000019552	Lsm7	100	88.350	ENSOGAG00000024373	-	100	88.350	Otolemur_garnettii
ENSRNOG00000019552	Lsm7	100	96.117	ENSOARG00000014013	LSM7	100	96.117	Ovis_aries
ENSRNOG00000019552	Lsm7	100	98.058	ENSPPAG00000026500	LSM7	100	98.058	Pan_paniscus
ENSRNOG00000019552	Lsm7	100	97.087	ENSPPRG00000008624	LSM7	100	97.087	Panthera_pardus
ENSRNOG00000019552	Lsm7	98	97.030	ENSPTIG00000016252	LSM7	98	97.030	Panthera_tigris_altaica
ENSRNOG00000019552	Lsm7	100	98.058	ENSPTRG00000010233	LSM7	100	98.058	Pan_troglodytes
ENSRNOG00000019552	Lsm7	100	98.058	ENSPANG00000020668	LSM7	100	98.058	Papio_anubis
ENSRNOG00000019552	Lsm7	99	97.059	ENSPKIG00000011325	lsm7	99	97.059	Paramormyrops_kingsleyae
ENSRNOG00000019552	Lsm7	97	98.000	ENSPSIG00000017149	LSM7	88	98.000	Pelodiscus_sinensis
ENSRNOG00000019552	Lsm7	99	95.098	ENSPMGG00000006498	lsm7	99	95.098	Periophthalmus_magnuspinnatus
ENSRNOG00000019552	Lsm7	99	99.020	ENSPCIG00000030454	LSM7	99	99.020	Phascolarctos_cinereus
ENSRNOG00000019552	Lsm7	99	93.137	ENSPFOG00000012467	lsm7	90	93.137	Poecilia_formosa
ENSRNOG00000019552	Lsm7	99	93.137	ENSPLAG00000000252	lsm7	94	94.059	Poecilia_latipinna
ENSRNOG00000019552	Lsm7	99	93.137	ENSPMEG00000000587	lsm7	94	94.059	Poecilia_mexicana
ENSRNOG00000019552	Lsm7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSRNOG00000019552	Lsm7	72	95.946	ENSPPYG00000009348	-	51	95.946	Pongo_abelii
ENSRNOG00000019552	Lsm7	100	98.058	ENSPCOG00000017177	LSM7	100	98.058	Propithecus_coquereli
ENSRNOG00000019552	Lsm7	99	94.118	ENSPNYG00000006938	lsm7	99	94.118	Pundamilia_nyererei
ENSRNOG00000019552	Lsm7	99	95.098	ENSPNAG00000010141	lsm7	99	95.098	Pygocentrus_nattereri
ENSRNOG00000019552	Lsm7	100	98.058	ENSRBIG00000035978	LSM7	100	98.058	Rhinopithecus_bieti
ENSRNOG00000019552	Lsm7	100	98.058	ENSRROG00000034044	LSM7	100	98.058	Rhinopithecus_roxellana
ENSRNOG00000019552	Lsm7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSRNOG00000019552	Lsm7	100	98.058	ENSSBOG00000034899	LSM7	100	98.058	Saimiri_boliviensis_boliviensis
ENSRNOG00000019552	Lsm7	99	95.098	ENSSFOG00015006728	lsm7	99	95.098	Scleropages_formosus
ENSRNOG00000019552	Lsm7	99	93.137	ENSSMAG00000004195	lsm7	92	95.000	Scophthalmus_maximus
ENSRNOG00000019552	Lsm7	99	95.098	ENSSDUG00000001863	lsm7	99	95.098	Seriola_dumerili
ENSRNOG00000019552	Lsm7	99	95.098	ENSSLDG00000016339	lsm7	99	95.098	Seriola_lalandi_dorsalis
ENSRNOG00000019552	Lsm7	99	95.098	ENSSPAG00000015221	lsm7	99	95.098	Stegastes_partitus
ENSRNOG00000019552	Lsm7	98	98.020	ENSSSCG00000013463	LSM7	99	98.020	Sus_scrofa
ENSRNOG00000019552	Lsm7	97	97.000	ENSTGUG00000000067	LSM7	99	97.000	Taeniopygia_guttata
ENSRNOG00000019552	Lsm7	99	95.098	ENSTRUG00000022913	lsm7	99	95.098	Takifugu_rubripes
ENSRNOG00000019552	Lsm7	99	95.098	ENSTNIG00000015525	lsm7	99	95.098	Tetraodon_nigroviridis
ENSRNOG00000019552	Lsm7	67	86.957	ENSTBEG00000016602	LSM7	99	86.957	Tupaia_belangeri
ENSRNOG00000019552	Lsm7	100	95.146	ENSUAMG00000000912	LSM7	86	95.146	Ursus_americanus
ENSRNOG00000019552	Lsm7	98	97.030	ENSUMAG00000006556	LSM7	79	97.030	Ursus_maritimus
ENSRNOG00000019552	Lsm7	69	95.775	ENSVVUG00000002640	LSM7	65	95.775	Vulpes_vulpes
ENSRNOG00000019552	Lsm7	97	97.000	ENSXETG00000022166	lsm7	99	97.000	Xenopus_tropicalis
ENSRNOG00000019552	Lsm7	98	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSRNOG00000019552	Lsm7	99	96.078	ENSXMAG00000018630	lsm7	99	96.078	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	IEA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0120115	Lsm2-8 complex	-	IEA	Component
GO:0120115	Lsm2-8 complex	-	ISO	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component