EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019572 (Gene tree)
Gene ID: 290647
Gene Symbol: Lsm4
Alias: LOC290647
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 5420 bases
Position: chr16:20506399-20511818
Accession: 1306808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026567	LSM	PF01423.22	8.9e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026567	-	911	-	ENSRNOP00000026567	138 (aa)	-	D4A2C6

Gene Model

Click here to download ENSRNOG00000019572's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019572's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000019572	Lsm4	65	31.522	ENSRNOG00000050410	Snrpd3	56	34.722
ENSRNOG00000019572	Lsm4	70	35.644	ENSRNOG00000048725	Lsm2	92	34.831

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019572	Lsm4	100	96.403	ENSG00000130520	LSM4	100	96.403	Homo_sapiens
ENSRNOG00000019572	Lsm4	71	93.939	ENSAPOG00000005643	lsm4	58	95.455	Acanthochromis_polyacanthus
ENSRNOG00000019572	Lsm4	99	96.377	ENSAMEG00000011162	LSM4	95	96.377	Ailuropoda_melanoleuca
ENSRNOG00000019572	Lsm4	99	75.524	ENSAOCG00000006414	lsm4	59	95.455	Amphiprion_ocellaris
ENSRNOG00000019572	Lsm4	99	72.917	ENSAPEG00000006238	lsm4	59	95.455	Amphiprion_percula
ENSRNOG00000019572	Lsm4	71	93.939	ENSATEG00000016559	lsm4	58	95.455	Anabas_testudineus
ENSRNOG00000019572	Lsm4	100	96.403	ENSANAG00000034659	LSM4	100	96.403	Aotus_nancymaae
ENSRNOG00000019572	Lsm4	79	81.452	ENSACLG00000022738	lsm4	60	95.455	Astatotilapia_calliptera
ENSRNOG00000019572	Lsm4	99	81.884	ENSAMXG00000016932	lsm4	62	95.455	Astyanax_mexicanus
ENSRNOG00000019572	Lsm4	100	96.403	ENSBTAG00000008578	LSM4	100	96.403	Bos_taurus
ENSRNOG00000019572	Lsm4	60	73.494	WBGene00003078	lsm-4	67	73.494	Caenorhabditis_elegans
ENSRNOG00000019572	Lsm4	100	96.403	ENSCJAG00000014171	LSM4	100	96.403	Callithrix_jacchus
ENSRNOG00000019572	Lsm4	99	96.377	ENSCAFG00000014900	LSM4	90	96.377	Canis_familiaris
ENSRNOG00000019572	Lsm4	100	96.403	ENSCAFG00020012137	LSM4	100	96.403	Canis_lupus_dingo
ENSRNOG00000019572	Lsm4	99	96.377	ENSCHIG00000010928	LSM4	91	96.377	Capra_hircus
ENSRNOG00000019572	Lsm4	100	97.122	ENSTSYG00000030906	LSM4	100	97.122	Carlito_syrichta
ENSRNOG00000019572	Lsm4	100	95.683	ENSCAPG00000014140	LSM4	100	95.683	Cavia_aperea
ENSRNOG00000019572	Lsm4	100	95.683	ENSCPOG00000024117	LSM4	100	95.683	Cavia_porcellus
ENSRNOG00000019572	Lsm4	100	96.403	ENSCCAG00000036308	LSM4	100	96.403	Cebus_capucinus
ENSRNOG00000019572	Lsm4	100	96.403	ENSCATG00000029311	LSM4	100	96.403	Cercocebus_atys
ENSRNOG00000019572	Lsm4	100	92.806	ENSCLAG00000010828	LSM4	100	92.806	Chinchilla_lanigera
ENSRNOG00000019572	Lsm4	100	96.403	ENSCSAG00000005370	LSM4	100	96.403	Chlorocebus_sabaeus
ENSRNOG00000019572	Lsm4	100	76.087	ENSCPBG00000012925	LSM4	100	76.087	Chrysemys_picta_bellii
ENSRNOG00000019572	Lsm4	60	92.771	ENSCING00000007519	-	69	90.909	Ciona_intestinalis
ENSRNOG00000019572	Lsm4	60	93.976	ENSCSAVG00000008596	-	70	92.045	Ciona_savignyi
ENSRNOG00000019572	Lsm4	100	96.403	ENSCANG00000043686	LSM4	100	96.403	Colobus_angolensis_palliatus
ENSRNOG00000019572	Lsm4	100	99.275	ENSCGRG00001014436	Lsm4	100	99.275	Cricetulus_griseus_chok1gshd
ENSRNOG00000019572	Lsm4	100	98.551	ENSCGRG00000009398	Lsm4	100	99.270	Cricetulus_griseus_crigri
ENSRNOG00000019572	Lsm4	70	93.814	ENSCSEG00000016127	lsm4	62	95.455	Cynoglossus_semilaevis
ENSRNOG00000019572	Lsm4	99	76.087	ENSCVAG00000010601	lsm4	62	95.455	Cyprinodon_variegatus
ENSRNOG00000019572	Lsm4	88	73.171	ENSCVAG00000021828	lsm4	56	94.521	Cyprinodon_variegatus
ENSRNOG00000019572	Lsm4	97	76.596	ENSDARG00000023852	lsm4	62	95.455	Danio_rerio
ENSRNOG00000019572	Lsm4	100	95.683	ENSDORG00000024225	Lsm4	100	95.683	Dipodomys_ordii
ENSRNOG00000019572	Lsm4	64	87.778	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSRNOG00000019572	Lsm4	89	94.355	ENSETEG00000007762	-	100	94.355	Echinops_telfairi
ENSRNOG00000019572	Lsm4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSRNOG00000019572	Lsm4	100	96.403	ENSECAG00000010141	LSM4	57	96.403	Equus_caballus
ENSRNOG00000019572	Lsm4	95	82.090	ENSELUG00000012821	lsm4	66	95.402	Esox_lucius
ENSRNOG00000019572	Lsm4	100	96.403	ENSFCAG00000040580	LSM4	100	96.403	Felis_catus
ENSRNOG00000019572	Lsm4	99	75.182	ENSFALG00000009478	LSM4	99	75.182	Ficedula_albicollis
ENSRNOG00000019572	Lsm4	99	93.478	ENSFDAG00000010124	LSM4	100	93.478	Fukomys_damarensis
ENSRNOG00000019572	Lsm4	69	93.750	ENSGMOG00000007729	lsm4	59	95.402	Gadus_morhua
ENSRNOG00000019572	Lsm4	100	75.362	ENSGALG00000003385	LSM4	100	75.362	Gallus_gallus
ENSRNOG00000019572	Lsm4	79	81.452	ENSGAFG00000004903	lsm4	55	91.781	Gambusia_affinis
ENSRNOG00000019572	Lsm4	68	95.789	ENSGACG00000008140	lsm4	59	95.455	Gasterosteus_aculeatus
ENSRNOG00000019572	Lsm4	100	76.087	ENSGAGG00000017812	LSM4	100	76.087	Gopherus_agassizii
ENSRNOG00000019572	Lsm4	100	96.403	ENSGGOG00000012914	-	100	96.403	Gorilla_gorilla
ENSRNOG00000019572	Lsm4	100	93.525	ENSHGLG00000006568	LSM4	100	93.525	Heterocephalus_glaber_female
ENSRNOG00000019572	Lsm4	66	96.739	ENSHGLG00100007894	LSM4	99	96.739	Heterocephalus_glaber_male
ENSRNOG00000019572	Lsm4	99	75.182	ENSHCOG00000008819	lsm4	62	95.455	Hippocampus_comes
ENSRNOG00000019572	Lsm4	99	81.884	ENSIPUG00000005368	Lsm4	62	95.455	Ictalurus_punctatus
ENSRNOG00000019572	Lsm4	100	96.403	ENSSTOG00000016494	LSM4	100	96.403	Ictidomys_tridecemlineatus
ENSRNOG00000019572	Lsm4	100	97.842	ENSJJAG00000017420	Lsm4	100	97.842	Jaculus_jaculus
ENSRNOG00000019572	Lsm4	61	95.238	ENSKMAG00000005073	lsm4	61	94.318	Kryptolebias_marmoratus
ENSRNOG00000019572	Lsm4	71	93.939	ENSLBEG00000027930	lsm4	59	95.455	Labrus_bergylta
ENSRNOG00000019572	Lsm4	99	81.022	ENSLACG00000015861	LSM4	98	81.022	Latimeria_chalumnae
ENSRNOG00000019572	Lsm4	93	82.946	ENSLOCG00000002025	lsm4	62	95.455	Lepisosteus_oculatus
ENSRNOG00000019572	Lsm4	99	94.928	ENSLAFG00000017459	LSM4	99	94.928	Loxodonta_africana
ENSRNOG00000019572	Lsm4	100	96.403	ENSMFAG00000031194	LSM4	100	96.403	Macaca_fascicularis
ENSRNOG00000019572	Lsm4	100	96.403	ENSMMUG00000004405	LSM4	100	96.403	Macaca_mulatta
ENSRNOG00000019572	Lsm4	100	96.403	ENSMNEG00000042899	LSM4	100	96.403	Macaca_nemestrina
ENSRNOG00000019572	Lsm4	100	96.403	ENSMLEG00000027948	LSM4	100	96.403	Mandrillus_leucophaeus
ENSRNOG00000019572	Lsm4	99	77.536	ENSMAMG00000006190	lsm4	62	95.455	Mastacembelus_armatus
ENSRNOG00000019572	Lsm4	79	81.452	ENSMZEG00005016420	lsm4	60	95.455	Maylandia_zebra
ENSRNOG00000019572	Lsm4	99	80.576	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
ENSRNOG00000019572	Lsm4	100	95.683	ENSMICG00000000222	LSM4	100	95.683	Microcebus_murinus
ENSRNOG00000019572	Lsm4	100	100.000	ENSMOCG00000020861	Lsm4	100	100.000	Microtus_ochrogaster
ENSRNOG00000019572	Lsm4	89	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSRNOG00000019572	Lsm4	99	73.913	ENSMALG00000018159	lsm4	62	94.318	Monopterus_albus
ENSRNOG00000019572	Lsm4	100	100.000	MGP_CAROLIEiJ_G0031158	Lsm4	100	100.000	Mus_caroli
ENSRNOG00000019572	Lsm4	100	100.000	ENSMUSG00000031848	Lsm4	100	100.000	Mus_musculus
ENSRNOG00000019572	Lsm4	100	100.000	MGP_PahariEiJ_G0021623	Lsm4	100	100.000	Mus_pahari
ENSRNOG00000019572	Lsm4	100	100.000	MGP_SPRETEiJ_G0032276	Lsm4	100	100.000	Mus_spretus
ENSRNOG00000019572	Lsm4	100	96.403	ENSMPUG00000015589	LSM4	100	96.403	Mustela_putorius_furo
ENSRNOG00000019572	Lsm4	99	96.377	ENSMLUG00000004010	LSM4	99	96.377	Myotis_lucifugus
ENSRNOG00000019572	Lsm4	100	99.281	ENSNGAG00000008644	Lsm4	100	99.281	Nannospalax_galili
ENSRNOG00000019572	Lsm4	70	93.878	ENSNBRG00000022150	lsm4	54	95.402	Neolamprologus_brichardi
ENSRNOG00000019572	Lsm4	89	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
ENSRNOG00000019572	Lsm4	89	90.323	ENSOPRG00000005575	LSM4	100	80.645	Ochotona_princeps
ENSRNOG00000019572	Lsm4	100	84.058	ENSODEG00000004519	-	100	73.913	Octodon_degus
ENSRNOG00000019572	Lsm4	100	71.014	ENSODEG00000011712	-	100	71.014	Octodon_degus
ENSRNOG00000019572	Lsm4	100	93.525	ENSODEG00000020549	-	100	93.525	Octodon_degus
ENSRNOG00000019572	Lsm4	79	81.452	ENSONIG00000012724	lsm4	60	95.455	Oreochromis_niloticus
ENSRNOG00000019572	Lsm4	62	90.110	ENSOANG00000007434	LSM4	78	90.110	Ornithorhynchus_anatinus
ENSRNOG00000019572	Lsm4	99	77.305	ENSORLG00000008391	lsm4	97	69.784	Oryzias_latipes
ENSRNOG00000019572	Lsm4	99	70.861	ENSORLG00020014829	lsm4	97	69.784	Oryzias_latipes_hni
ENSRNOG00000019572	Lsm4	99	77.305	ENSORLG00015010205	lsm4	97	69.784	Oryzias_latipes_hsok
ENSRNOG00000019572	Lsm4	100	80.576	ENSOMEG00000003606	lsm4	61	94.318	Oryzias_melastigma
ENSRNOG00000019572	Lsm4	71	94.949	ENSOGAG00000027992	LSM4	60	96.552	Otolemur_garnettii
ENSRNOG00000019572	Lsm4	86	95.798	ENSOARG00000012553	LSM4	94	95.798	Ovis_aries
ENSRNOG00000019572	Lsm4	100	96.403	ENSPPAG00000044045	-	100	96.403	Pan_paniscus
ENSRNOG00000019572	Lsm4	100	96.403	ENSPPRG00000018264	LSM4	100	96.403	Panthera_pardus
ENSRNOG00000019572	Lsm4	99	96.377	ENSPTIG00000006306	LSM4	100	96.377	Panthera_tigris_altaica
ENSRNOG00000019572	Lsm4	100	96.403	ENSPTRG00000031470	LSM4	100	96.403	Pan_troglodytes
ENSRNOG00000019572	Lsm4	100	96.403	ENSPANG00000014399	LSM4	100	96.403	Papio_anubis
ENSRNOG00000019572	Lsm4	99	80.292	ENSPKIG00000006154	lsm4	62	95.455	Paramormyrops_kingsleyae
ENSRNOG00000019572	Lsm4	99	75.182	ENSPSIG00000012358	LSM4	100	75.182	Pelodiscus_sinensis
ENSRNOG00000019572	Lsm4	100	100.000	ENSPEMG00000001358	Lsm4	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000019572	Lsm4	99	77.857	ENSPLAG00000016267	lsm4	62	95.455	Poecilia_latipinna
ENSRNOG00000019572	Lsm4	98	76.259	ENSPMEG00000016378	lsm4	63	95.402	Poecilia_mexicana
ENSRNOG00000019572	Lsm4	100	96.403	ENSPPYG00000009736	LSM4	100	96.403	Pongo_abelii
ENSRNOG00000019572	Lsm4	89	94.355	ENSPCAG00000008513	LSM4	100	94.355	Procavia_capensis
ENSRNOG00000019572	Lsm4	100	95.683	ENSPCOG00000019837	LSM4	100	95.683	Propithecus_coquereli
ENSRNOG00000019572	Lsm4	100	96.403	ENSPVAG00000015383	LSM4	100	96.403	Pteropus_vampyrus
ENSRNOG00000019572	Lsm4	79	81.452	ENSPNYG00000016794	lsm4	60	95.455	Pundamilia_nyererei
ENSRNOG00000019572	Lsm4	96	80.597	ENSPNAG00000016598	lsm4	65	95.402	Pygocentrus_nattereri
ENSRNOG00000019572	Lsm4	100	96.403	ENSRBIG00000024717	LSM4	100	96.403	Rhinopithecus_bieti
ENSRNOG00000019572	Lsm4	100	96.403	ENSRROG00000045706	LSM4	100	96.403	Rhinopithecus_roxellana
ENSRNOG00000019572	Lsm4	90	96.000	ENSSBOG00000022455	LSM4	100	96.000	Saimiri_boliviensis_boliviensis
ENSRNOG00000019572	Lsm4	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
ENSRNOG00000019572	Lsm4	99	78.832	ENSSFOG00015021067	lsm4	62	95.455	Scleropages_formosus
ENSRNOG00000019572	Lsm4	99	69.718	ENSSMAG00000021020	lsm4	95	69.718	Scophthalmus_maximus
ENSRNOG00000019572	Lsm4	71	93.939	ENSSDUG00000009588	lsm4	53	95.455	Seriola_dumerili
ENSRNOG00000019572	Lsm4	71	93.939	ENSSLDG00000006827	lsm4	52	95.455	Seriola_lalandi_dorsalis
ENSRNOG00000019572	Lsm4	62	95.402	ENSSPUG00000010166	LSM4	56	95.402	Sphenodon_punctatus
ENSRNOG00000019572	Lsm4	71	93.939	ENSSPAG00000011615	lsm4	58	95.455	Stegastes_partitus
ENSRNOG00000019572	Lsm4	100	96.403	ENSSSCG00000034314	LSM4	100	96.403	Sus_scrofa
ENSRNOG00000019572	Lsm4	79	79.839	ENSTRUG00000021737	lsm4	62	94.318	Takifugu_rubripes
ENSRNOG00000019572	Lsm4	99	79.286	ENSTNIG00000010191	lsm4	61	95.455	Tetraodon_nigroviridis
ENSRNOG00000019572	Lsm4	99	96.377	ENSUAMG00000000665	LSM4	99	96.377	Ursus_americanus
ENSRNOG00000019572	Lsm4	100	96.403	ENSUMAG00000009013	LSM4	100	96.403	Ursus_maritimus
ENSRNOG00000019572	Lsm4	99	96.377	ENSVVUG00000008136	LSM4	71	96.377	Vulpes_vulpes
ENSRNOG00000019572	Lsm4	100	90.647	ENSXETG00000024933	lsm4	100	87.770	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	19188494.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0016020	membrane	-	IEA	Component
GO:0016020	membrane	-	ISO	Component
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033962	cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0042731	PH domain binding	-	IEA	Function
GO:0042731	PH domain binding	-	ISO	Function
GO:0043005	neuron projection	19188494.	IDA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	IEA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0120115	Lsm2-8 complex	-	IEA	Component
GO:0120115	Lsm2-8 complex	-	ISO	Component