EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019579 (Gene tree)
Gene ID: 315708
Gene Symbol: Edc3
Alias: LOC315708|Lsm16|RGD1306898
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 44063 bases
Position: chr8:62482140-62526202
Accession: 1306898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026492	FDF	PF09532.10	1.2e-17	1	1
ENSRNOP00000026492	LSM14	PF12701.7	6.9e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026492	-	1895	XM_002729908	ENSRNOP00000026492	506 (aa)	XP_001072079	F1M7Z1

Gene Model

Click here to download ENSRNOG00000019579's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019579's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019579	Edc3	99	96.238	ENSG00000179151	EDC3	100	96.319	Homo_sapiens
ENSRNOG00000019579	Edc3	99	55.577	ENSAPOG00000008655	EDC3	99	55.577	Acanthochromis_polyacanthus
ENSRNOG00000019579	Edc3	99	69.625	ENSAPOG00000010791	edc3	99	68.972	Acanthochromis_polyacanthus
ENSRNOG00000019579	Edc3	99	95.644	ENSAMEG00000008963	EDC3	99	95.644	Ailuropoda_melanoleuca
ENSRNOG00000019579	Edc3	99	68.577	ENSACIG00000017751	edc3	99	67.787	Amphilophus_citrinellus
ENSRNOG00000019579	Edc3	99	59.216	ENSACIG00000005330	EDC3	99	59.216	Amphilophus_citrinellus
ENSRNOG00000019579	Edc3	99	69.822	ENSAOCG00000005431	edc3	99	69.170	Amphiprion_ocellaris
ENSRNOG00000019579	Edc3	99	57.895	ENSAOCG00000009103	-	99	57.227	Amphiprion_ocellaris
ENSRNOG00000019579	Edc3	99	57.812	ENSAPEG00000007841	EDC3	99	57.227	Amphiprion_percula
ENSRNOG00000019579	Edc3	99	69.822	ENSAPEG00000000968	edc3	99	69.170	Amphiprion_percula
ENSRNOG00000019579	Edc3	99	57.812	ENSATEG00000004205	-	99	58.203	Anabas_testudineus
ENSRNOG00000019579	Edc3	99	70.158	ENSATEG00000015505	edc3	99	68.577	Anabas_testudineus
ENSRNOG00000019579	Edc3	90	86.813	ENSAPLG00000008957	EDC3	100	86.154	Anas_platyrhynchos
ENSRNOG00000019579	Edc3	78	87.817	ENSACAG00000000460	-	99	87.056	Anolis_carolinensis
ENSRNOG00000019579	Edc3	99	96.238	ENSANAG00000024078	EDC3	99	96.238	Aotus_nancymaae
ENSRNOG00000019579	Edc3	99	67.589	ENSACLG00000007232	edc3	99	68.182	Astatotilapia_calliptera
ENSRNOG00000019579	Edc3	99	57.647	ENSACLG00000018776	-	99	58.039	Astatotilapia_calliptera
ENSRNOG00000019579	Edc3	99	70.370	ENSAMXG00000001589	edc3	99	70.727	Astyanax_mexicanus
ENSRNOG00000019579	Edc3	99	95.644	ENSBTAG00000007308	EDC3	99	95.644	Bos_taurus
ENSRNOG00000019579	Edc3	99	96.436	ENSCJAG00000017681	EDC3	99	96.436	Callithrix_jacchus
ENSRNOG00000019579	Edc3	99	95.446	ENSCAFG00000017935	EDC3	99	95.446	Canis_familiaris
ENSRNOG00000019579	Edc3	99	95.446	ENSCAFG00020003909	EDC3	99	95.446	Canis_lupus_dingo
ENSRNOG00000019579	Edc3	99	96.238	ENSCHIG00000023658	EDC3	99	96.238	Capra_hircus
ENSRNOG00000019579	Edc3	99	96.040	ENSTSYG00000004822	EDC3	99	96.040	Carlito_syrichta
ENSRNOG00000019579	Edc3	99	94.851	ENSCPOG00000015595	EDC3	99	94.851	Cavia_porcellus
ENSRNOG00000019579	Edc3	99	96.634	ENSCCAG00000021663	EDC3	99	96.634	Cebus_capucinus
ENSRNOG00000019579	Edc3	99	96.238	ENSCATG00000037511	EDC3	99	96.238	Cercocebus_atys
ENSRNOG00000019579	Edc3	99	94.851	ENSCLAG00000005700	EDC3	99	94.851	Chinchilla_lanigera
ENSRNOG00000019579	Edc3	99	96.238	ENSCSAG00000014239	EDC3	99	96.238	Chlorocebus_sabaeus
ENSRNOG00000019579	Edc3	99	89.109	ENSCPBG00000024239	EDC3	99	89.109	Chrysemys_picta_bellii
ENSRNOG00000019579	Edc3	99	37.984	ENSCING00000022142	-	99	37.037	Ciona_intestinalis
ENSRNOG00000019579	Edc3	99	96.238	ENSCANG00000028699	EDC3	99	96.238	Colobus_angolensis_palliatus
ENSRNOG00000019579	Edc3	100	97.826	ENSCGRG00001013874	Edc3	99	97.826	Cricetulus_griseus_chok1gshd
ENSRNOG00000019579	Edc3	100	97.826	ENSCGRG00000011885	Edc3	99	97.826	Cricetulus_griseus_crigri
ENSRNOG00000019579	Edc3	99	68.972	ENSCSEG00000012996	edc3	99	68.911	Cynoglossus_semilaevis
ENSRNOG00000019579	Edc3	99	69.231	ENSCVAG00000008023	edc3	99	68.775	Cyprinodon_variegatus
ENSRNOG00000019579	Edc3	99	68.110	ENSDARG00000051931	edc3	99	67.906	Danio_rerio
ENSRNOG00000019579	Edc3	99	84.600	ENSDNOG00000030661	EDC3	99	84.016	Dasypus_novemcinctus
ENSRNOG00000019579	Edc3	64	98.039	ENSETEG00000002398	-	64	98.039	Echinops_telfairi
ENSRNOG00000019579	Edc3	99	96.436	ENSEASG00005005071	EDC3	99	96.436	Equus_asinus_asinus
ENSRNOG00000019579	Edc3	99	96.436	ENSECAG00000017994	EDC3	99	96.436	Equus_caballus
ENSRNOG00000019579	Edc3	99	65.686	ENSELUG00000005794	edc3	99	65.490	Esox_lucius
ENSRNOG00000019579	Edc3	99	62.402	ENSELUG00000007607	EDC3	99	62.008	Esox_lucius
ENSRNOG00000019579	Edc3	99	95.644	ENSFCAG00000002014	EDC3	99	95.644	Felis_catus
ENSRNOG00000019579	Edc3	98	85.282	ENSFALG00000004543	EDC3	95	84.677	Ficedula_albicollis
ENSRNOG00000019579	Edc3	99	94.257	ENSFDAG00000012582	EDC3	99	94.257	Fukomys_damarensis
ENSRNOG00000019579	Edc3	99	69.428	ENSFHEG00000009375	edc3	99	68.972	Fundulus_heteroclitus
ENSRNOG00000019579	Edc3	99	67.843	ENSGMOG00000002715	edc3	99	67.191	Gadus_morhua
ENSRNOG00000019579	Edc3	99	88.515	ENSGALG00000040181	EDC3	99	87.921	Gallus_gallus
ENSRNOG00000019579	Edc3	99	67.787	ENSGAFG00000014433	edc3	99	67.194	Gambusia_affinis
ENSRNOG00000019579	Edc3	99	55.447	ENSGACG00000014671	EDC3	99	55.490	Gasterosteus_aculeatus
ENSRNOG00000019579	Edc3	99	68.577	ENSGACG00000009783	edc3	99	68.182	Gasterosteus_aculeatus
ENSRNOG00000019579	Edc3	99	88.713	ENSGAGG00000023477	EDC3	99	88.119	Gopherus_agassizii
ENSRNOG00000019579	Edc3	99	96.238	ENSGGOG00000003552	EDC3	99	96.238	Gorilla_gorilla
ENSRNOG00000019579	Edc3	99	57.647	ENSHBUG00000020817	EDC3	99	58.039	Haplochromis_burtoni
ENSRNOG00000019579	Edc3	99	67.589	ENSHBUG00000003635	edc3	99	68.182	Haplochromis_burtoni
ENSRNOG00000019579	Edc3	99	67.780	ENSHCOG00000016834	edc3	99	67.520	Hippocampus_comes
ENSRNOG00000019579	Edc3	99	69.685	ENSIPUG00000005695	edc3	99	69.685	Ictalurus_punctatus
ENSRNOG00000019579	Edc3	99	96.832	ENSSTOG00000013936	EDC3	99	96.832	Ictidomys_tridecemlineatus
ENSRNOG00000019579	Edc3	99	96.040	ENSJJAG00000008074	Edc3	99	96.040	Jaculus_jaculus
ENSRNOG00000019579	Edc3	99	68.972	ENSKMAG00000001243	edc3	99	68.972	Kryptolebias_marmoratus
ENSRNOG00000019579	Edc3	99	55.842	ENSKMAG00000001987	EDC3	99	55.842	Kryptolebias_marmoratus
ENSRNOG00000019579	Edc3	99	57.812	ENSLBEG00000017984	EDC3	99	57.227	Labrus_bergylta
ENSRNOG00000019579	Edc3	99	69.034	ENSLBEG00000013435	edc3	99	68.182	Labrus_bergylta
ENSRNOG00000019579	Edc3	99	77.734	ENSLACG00000014149	EDC3	99	77.734	Latimeria_chalumnae
ENSRNOG00000019579	Edc3	99	67.255	ENSLOCG00000014625	edc3	99	67.255	Lepisosteus_oculatus
ENSRNOG00000019579	Edc3	100	95.059	ENSLAFG00000002992	EDC3	99	94.466	Loxodonta_africana
ENSRNOG00000019579	Edc3	99	96.040	ENSMFAG00000043074	EDC3	99	96.040	Macaca_fascicularis
ENSRNOG00000019579	Edc3	99	96.040	ENSMMUG00000011071	EDC3	99	96.040	Macaca_mulatta
ENSRNOG00000019579	Edc3	99	96.040	ENSMNEG00000035316	EDC3	99	96.040	Macaca_nemestrina
ENSRNOG00000019579	Edc3	99	96.238	ENSMLEG00000030372	EDC3	99	96.238	Mandrillus_leucophaeus
ENSRNOG00000019579	Edc3	99	56.778	ENSMAMG00000005423	-	99	56.974	Mastacembelus_armatus
ENSRNOG00000019579	Edc3	99	69.763	ENSMAMG00000000505	edc3	99	69.368	Mastacembelus_armatus
ENSRNOG00000019579	Edc3	99	58.153	ENSMZEG00005005654	EDC3	99	58.546	Maylandia_zebra
ENSRNOG00000019579	Edc3	99	67.589	ENSMZEG00005004892	edc3	99	68.182	Maylandia_zebra
ENSRNOG00000019579	Edc3	99	87.921	ENSMGAG00000002617	EDC3	99	87.129	Meleagris_gallopavo
ENSRNOG00000019579	Edc3	99	96.634	ENSMICG00000043190	EDC3	99	96.634	Microcebus_murinus
ENSRNOG00000019579	Edc3	100	97.628	ENSMOCG00000016205	Edc3	99	97.628	Microtus_ochrogaster
ENSRNOG00000019579	Edc3	99	68.972	ENSMMOG00000012278	edc3	99	68.317	Mola_mola
ENSRNOG00000019579	Edc3	99	92.277	ENSMODG00000009442	EDC3	99	92.277	Monodelphis_domestica
ENSRNOG00000019579	Edc3	99	69.763	ENSMALG00000008658	edc3	99	69.763	Monopterus_albus
ENSRNOG00000019579	Edc3	100	98.617	MGP_CAROLIEiJ_G0032280	Edc3	99	98.617	Mus_caroli
ENSRNOG00000019579	Edc3	100	98.814	ENSMUSG00000038957	Edc3	99	98.814	Mus_musculus
ENSRNOG00000019579	Edc3	100	98.617	MGP_PahariEiJ_G0015146	Edc3	99	98.617	Mus_pahari
ENSRNOG00000019579	Edc3	100	98.617	MGP_SPRETEiJ_G0033420	Edc3	99	98.617	Mus_spretus
ENSRNOG00000019579	Edc3	99	95.644	ENSMPUG00000017293	EDC3	99	95.644	Mustela_putorius_furo
ENSRNOG00000019579	Edc3	99	95.266	ENSMLUG00000016382	EDC3	99	95.266	Myotis_lucifugus
ENSRNOG00000019579	Edc3	100	96.640	ENSNGAG00000010923	Edc3	99	96.640	Nannospalax_galili
ENSRNOG00000019579	Edc3	99	67.984	ENSNBRG00000002434	edc3	99	67.984	Neolamprologus_brichardi
ENSRNOG00000019579	Edc3	99	58.153	ENSNBRG00000007881	EDC3	99	58.546	Neolamprologus_brichardi
ENSRNOG00000019579	Edc3	99	86.535	ENSNLEG00000014577	EDC3	99	86.535	Nomascus_leucogenys
ENSRNOG00000019579	Edc3	99	91.287	ENSMEUG00000009077	EDC3	99	90.693	Notamacropus_eugenii
ENSRNOG00000019579	Edc3	78	96.078	ENSOPRG00000009540	-	78	96.078	Ochotona_princeps
ENSRNOG00000019579	Edc3	99	59.608	ENSONIG00000002932	-	99	59.608	Oreochromis_niloticus
ENSRNOG00000019579	Edc3	99	67.787	ENSONIG00000008434	edc3	99	68.379	Oreochromis_niloticus
ENSRNOG00000019579	Edc3	78	91.878	ENSOCUG00000017740	EDC3	86	91.878	Oryctolagus_cuniculus
ENSRNOG00000019579	Edc3	99	67.984	ENSORLG00000004883	edc3	99	67.787	Oryzias_latipes
ENSRNOG00000019579	Edc3	99	56.164	ENSORLG00000014399	-	98	55.599	Oryzias_latipes
ENSRNOG00000019579	Edc3	99	67.589	ENSORLG00020012262	edc3	99	67.589	Oryzias_latipes_hni
ENSRNOG00000019579	Edc3	99	56.164	ENSORLG00020019446	-	99	55.599	Oryzias_latipes_hni
ENSRNOG00000019579	Edc3	100	55.490	ENSORLG00015017635	-	95	55.490	Oryzias_latipes_hsok
ENSRNOG00000019579	Edc3	99	67.583	ENSORLG00015005634	edc3	99	67.787	Oryzias_latipes_hsok
ENSRNOG00000019579	Edc3	99	68.836	ENSOMEG00000014026	edc3	99	68.182	Oryzias_melastigma
ENSRNOG00000019579	Edc3	99	56.385	ENSOMEG00000017354	EDC3	99	55.403	Oryzias_melastigma
ENSRNOG00000019579	Edc3	99	97.030	ENSOGAG00000014441	EDC3	99	97.030	Otolemur_garnettii
ENSRNOG00000019579	Edc3	99	95.455	ENSOARG00000003476	EDC3	99	95.850	Ovis_aries
ENSRNOG00000019579	Edc3	99	96.238	ENSPPAG00000040143	EDC3	99	96.238	Pan_paniscus
ENSRNOG00000019579	Edc3	99	95.446	ENSPPRG00000006257	EDC3	99	95.446	Panthera_pardus
ENSRNOG00000019579	Edc3	99	95.446	ENSPTIG00000017424	EDC3	99	95.446	Panthera_tigris_altaica
ENSRNOG00000019579	Edc3	99	96.238	ENSPTRG00000007279	EDC3	99	96.238	Pan_troglodytes
ENSRNOG00000019579	Edc3	99	96.238	ENSPANG00000015997	EDC3	99	96.238	Papio_anubis
ENSRNOG00000019579	Edc3	99	66.601	ENSPKIG00000019810	EDC3	99	66.601	Paramormyrops_kingsleyae
ENSRNOG00000019579	Edc3	99	69.352	ENSPKIG00000004416	edc3	99	70.334	Paramormyrops_kingsleyae
ENSRNOG00000019579	Edc3	99	82.970	ENSPSIG00000008474	EDC3	99	82.970	Pelodiscus_sinensis
ENSRNOG00000019579	Edc3	99	66.732	ENSPMGG00000007223	edc3	99	66.732	Periophthalmus_magnuspinnatus
ENSRNOG00000019579	Edc3	100	97.036	ENSPEMG00000015260	Edc3	99	97.036	Peromyscus_maniculatus_bairdii
ENSRNOG00000019579	Edc3	99	90.693	ENSPCIG00000006276	EDC3	69	90.278	Phascolarctos_cinereus
ENSRNOG00000019579	Edc3	99	69.276	ENSPFOG00000012204	edc3	99	69.368	Poecilia_formosa
ENSRNOG00000019579	Edc3	99	69.276	ENSPLAG00000014420	edc3	99	69.368	Poecilia_latipinna
ENSRNOG00000019579	Edc3	99	69.276	ENSPMEG00000023289	edc3	99	69.368	Poecilia_mexicana
ENSRNOG00000019579	Edc3	99	69.368	ENSPREG00000016022	edc3	99	69.368	Poecilia_reticulata
ENSRNOG00000019579	Edc3	99	95.050	ENSPPYG00000006642	EDC3	99	95.050	Pongo_abelii
ENSRNOG00000019579	Edc3	88	100.000	ENSPCAG00000002802	EDC3	87	100.000	Procavia_capensis
ENSRNOG00000019579	Edc3	99	96.436	ENSPCOG00000013364	EDC3	99	96.436	Propithecus_coquereli
ENSRNOG00000019579	Edc3	99	95.248	ENSPVAG00000014733	EDC3	99	95.248	Pteropus_vampyrus
ENSRNOG00000019579	Edc3	99	57.647	ENSPNYG00000009669	EDC3	99	58.039	Pundamilia_nyererei
ENSRNOG00000019579	Edc3	99	67.589	ENSPNYG00000021797	edc3	99	68.182	Pundamilia_nyererei
ENSRNOG00000019579	Edc3	99	70.059	ENSPNAG00000019657	edc3	99	70.059	Pygocentrus_nattereri
ENSRNOG00000019579	Edc3	99	95.842	ENSRBIG00000019488	EDC3	99	95.842	Rhinopithecus_bieti
ENSRNOG00000019579	Edc3	99	95.842	ENSRROG00000034959	EDC3	99	95.842	Rhinopithecus_roxellana
ENSRNOG00000019579	Edc3	99	96.436	ENSSBOG00000004896	EDC3	99	96.436	Saimiri_boliviensis_boliviensis
ENSRNOG00000019579	Edc3	96	91.770	ENSSHAG00000015075	EDC3	94	91.152	Sarcophilus_harrisii
ENSRNOG00000019579	Edc3	99	63.905	ENSSFOG00015002439	edc3	90	77.557	Scleropages_formosus
ENSRNOG00000019579	Edc3	99	70.254	ENSSFOG00015016939	edc3	99	70.450	Scleropages_formosus
ENSRNOG00000019579	Edc3	99	56.863	ENSSMAG00000010176	-	99	57.310	Scophthalmus_maximus
ENSRNOG00000019579	Edc3	99	69.231	ENSSMAG00000010695	edc3	99	69.565	Scophthalmus_maximus
ENSRNOG00000019579	Edc3	99	59.100	ENSSDUG00000007671	EDC3	99	59.687	Seriola_dumerili
ENSRNOG00000019579	Edc3	99	69.231	ENSSDUG00000021844	edc3	99	68.379	Seriola_dumerili
ENSRNOG00000019579	Edc3	99	69.231	ENSSLDG00000022046	edc3	99	68.379	Seriola_lalandi_dorsalis
ENSRNOG00000019579	Edc3	80	97.177	ENSSARG00000003907	EDC3	80	97.177	Sorex_araneus
ENSRNOG00000019579	Edc3	99	88.713	ENSSPUG00000008232	EDC3	99	88.713	Sphenodon_punctatus
ENSRNOG00000019579	Edc3	99	57.451	ENSSPAG00000020327	EDC3	99	57.255	Stegastes_partitus
ENSRNOG00000019579	Edc3	99	69.625	ENSSPAG00000010009	edc3	99	69.763	Stegastes_partitus
ENSRNOG00000019579	Edc3	99	96.238	ENSSSCG00000001903	EDC3	99	96.238	Sus_scrofa
ENSRNOG00000019579	Edc3	99	88.317	ENSTGUG00000004007	EDC3	99	87.723	Taeniopygia_guttata
ENSRNOG00000019579	Edc3	99	70.158	ENSTRUG00000017078	edc3	99	69.960	Takifugu_rubripes
ENSRNOG00000019579	Edc3	99	68.566	ENSTNIG00000016047	edc3	99	67.520	Tetraodon_nigroviridis
ENSRNOG00000019579	Edc3	99	95.644	ENSTTRG00000007990	EDC3	99	95.644	Tursiops_truncatus
ENSRNOG00000019579	Edc3	99	95.644	ENSUAMG00000026710	-	99	95.644	Ursus_americanus
ENSRNOG00000019579	Edc3	99	95.644	ENSUMAG00000005006	EDC3	95	95.644	Ursus_maritimus
ENSRNOG00000019579	Edc3	78	86.275	ENSVPAG00000003499	-	78	86.275	Vicugna_pacos
ENSRNOG00000019579	Edc3	99	95.644	ENSVVUG00000018601	EDC3	99	95.644	Vulpes_vulpes
ENSRNOG00000019579	Edc3	68	82.184	ENSXETG00000010622	edc3	99	83.333	Xenopus_tropicalis
ENSRNOG00000019579	Edc3	99	69.170	ENSXMAG00000007377	edc3	99	69.170	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process
GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0033962	cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:1990174	phosphodiesterase decapping endonuclease activity	-	ISO	Function