EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019590 (Gene tree)
Gene ID: 681012
Gene Symbol: Smg5
Alias: LOC681012
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 27122 bases
Position: chr2:187708234-187735355
Accession: 1584731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026514	EST1	PF10374.9	7.9e-24	1	1
ENSRNOP00000026514	EST1_DNA_bind	PF10373.9	7.5e-40	1	2
ENSRNOP00000026514	EST1_DNA_bind	PF10373.9	7.5e-40	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000092291	-	593	-	-	- (aa)	-	-
ENSRNOT00000026514	-	4430	XM_001059906	ENSRNOP00000026514	1017 (aa)	XP_001059906	E9PU03
ENSRNOT00000092590	-	753	-	-	- (aa)	-	-

Gene Model

Click here to download ENSRNOG00000019590's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019590's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019590	Smg5	100	92.436	ENSG00000198952	SMG5	100	92.731	Homo_sapiens
ENSRNOG00000019590	Smg5	99	66.895	ENSAPOG00000019690	smg5	99	67.224	Acanthochromis_polyacanthus
ENSRNOG00000019590	Smg5	98	88.844	ENSAMEG00000014458	SMG5	100	89.347	Ailuropoda_melanoleuca
ENSRNOG00000019590	Smg5	99	64.513	ENSACIG00000001353	smg5	99	65.514	Amphilophus_citrinellus
ENSRNOG00000019590	Smg5	98	64.590	ENSAOCG00000019483	smg5	99	60.893	Amphiprion_ocellaris
ENSRNOG00000019590	Smg5	98	65.936	ENSAPEG00000022949	smg5	98	66.169	Amphiprion_percula
ENSRNOG00000019590	Smg5	99	65.314	ENSATEG00000005348	smg5	99	66.051	Anabas_testudineus
ENSRNOG00000019590	Smg5	98	77.507	ENSAPLG00000010263	SMG5	100	77.215	Anas_platyrhynchos
ENSRNOG00000019590	Smg5	100	92.043	ENSANAG00000032899	SMG5	100	92.338	Aotus_nancymaae
ENSRNOG00000019590	Smg5	99	64.928	ENSACLG00000009311	smg5	99	66.635	Astatotilapia_calliptera
ENSRNOG00000019590	Smg5	100	91.159	ENSBTAG00000009435	SMG5	100	91.650	Bos_taurus
ENSRNOG00000019590	Smg5	99	44.081	ENSBTAG00000021747	-	99	43.907	Bos_taurus
ENSRNOG00000019590	Smg5	100	91.945	ENSCJAG00000005684	SMG5	100	92.240	Callithrix_jacchus
ENSRNOG00000019590	Smg5	100	90.855	ENSCAFG00000016839	SMG5	100	91.445	Canis_familiaris
ENSRNOG00000019590	Smg5	100	90.855	ENSCAFG00020006061	SMG5	100	91.445	Canis_lupus_dingo
ENSRNOG00000019590	Smg5	100	91.061	ENSCHIG00000007709	SMG5	100	91.552	Capra_hircus
ENSRNOG00000019590	Smg5	99	44.109	ENSCHIG00000006323	-	99	44.227	Capra_hircus
ENSRNOG00000019590	Smg5	100	91.168	ENSTSYG00000004099	SMG5	100	91.757	Carlito_syrichta
ENSRNOG00000019590	Smg5	97	71.501	ENSCAPG00000003631	SMG5	100	72.378	Cavia_aperea
ENSRNOG00000019590	Smg5	100	92.043	ENSCPOG00000015696	SMG5	100	92.043	Cavia_porcellus
ENSRNOG00000019590	Smg5	100	91.847	ENSCCAG00000027409	SMG5	100	92.141	Cebus_capucinus
ENSRNOG00000019590	Smg5	100	92.534	ENSCATG00000030539	SMG5	100	92.927	Cercocebus_atys
ENSRNOG00000019590	Smg5	100	92.731	ENSCLAG00000003983	SMG5	100	92.731	Chinchilla_lanigera
ENSRNOG00000019590	Smg5	100	92.436	ENSCSAG00000002120	SMG5	100	92.829	Chlorocebus_sabaeus
ENSRNOG00000019590	Smg5	54	89.781	ENSCHOG00000008741	-	57	89.781	Choloepus_hoffmanni
ENSRNOG00000019590	Smg5	94	77.181	ENSCPBG00000025848	SMG5	100	77.462	Chrysemys_picta_bellii
ENSRNOG00000019590	Smg5	93	34.497	ENSCING00000008706	-	99	34.497	Ciona_intestinalis
ENSRNOG00000019590	Smg5	100	88.703	ENSCANG00000029208	SMG5	100	88.605	Colobus_angolensis_palliatus
ENSRNOG00000019590	Smg5	100	97.837	ENSCGRG00001006336	Smg5	100	97.837	Cricetulus_griseus_chok1gshd
ENSRNOG00000019590	Smg5	98	97.885	ENSCGRG00000005111	Smg5	100	97.883	Cricetulus_griseus_crigri
ENSRNOG00000019590	Smg5	99	64.516	ENSCSEG00000014220	smg5	99	65.521	Cynoglossus_semilaevis
ENSRNOG00000019590	Smg5	99	60.704	ENSCVAG00000000529	smg5	99	61.171	Cyprinodon_variegatus
ENSRNOG00000019590	Smg5	100	88.114	ENSDNOG00000000051	SMG5	100	88.310	Dasypus_novemcinctus
ENSRNOG00000019590	Smg5	92	36.797	ENSDNOG00000039862	-	100	36.161	Dasypus_novemcinctus
ENSRNOG00000019590	Smg5	100	91.650	ENSDORG00000010382	Smg5	100	91.257	Dipodomys_ordii
ENSRNOG00000019590	Smg5	75	33.962	FBgn0019890	Smg5	62	33.962	Drosophila_melanogaster
ENSRNOG00000019590	Smg5	82	94.175	ENSETEG00000010336	SMG5	91	94.175	Echinops_telfairi
ENSRNOG00000019590	Smg5	90	47.665	ENSEBUG00000003739	smg5	98	47.826	Eptatretus_burgeri
ENSRNOG00000019590	Smg5	100	91.945	ENSEASG00005019122	SMG5	100	91.945	Equus_asinus_asinus
ENSRNOG00000019590	Smg5	100	91.945	ENSECAG00000001389	SMG5	100	91.945	Equus_caballus
ENSRNOG00000019590	Smg5	72	96.542	ENSEEUG00000012690	SMG5	73	96.542	Erinaceus_europaeus
ENSRNOG00000019590	Smg5	99	64.966	ENSELUG00000012585	smg5	99	64.831	Esox_lucius
ENSRNOG00000019590	Smg5	100	90.472	ENSFCAG00000011783	SMG5	100	91.061	Felis_catus
ENSRNOG00000019590	Smg5	58	80.865	ENSFALG00000001166	-	99	80.301	Ficedula_albicollis
ENSRNOG00000019590	Smg5	98	90.332	ENSFDAG00000017388	SMG5	100	90.131	Fukomys_damarensis
ENSRNOG00000019590	Smg5	97	62.249	ENSFHEG00000013939	smg5	100	61.554	Fundulus_heteroclitus
ENSRNOG00000019590	Smg5	99	61.062	ENSGMOG00000007310	smg5	99	60.510	Gadus_morhua
ENSRNOG00000019590	Smg5	99	77.146	ENSGALG00000029918	-	100	76.521	Gallus_gallus
ENSRNOG00000019590	Smg5	73	74.773	ENSGAFG00000021691	smg5	96	68.051	Gambusia_affinis
ENSRNOG00000019590	Smg5	100	78.199	ENSGAGG00000016131	SMG5	100	78.232	Gopherus_agassizii
ENSRNOG00000019590	Smg5	100	92.141	ENSGGOG00000010932	SMG5	100	92.436	Gorilla_gorilla
ENSRNOG00000019590	Smg5	99	64.870	ENSHBUG00000008654	smg5	99	65.777	Haplochromis_burtoni
ENSRNOG00000019590	Smg5	100	90.079	ENSHGLG00000019152	SMG5	100	90.079	Heterocephalus_glaber_female
ENSRNOG00000019590	Smg5	89	90.121	ENSHGLG00100015948	SMG5	99	90.121	Heterocephalus_glaber_male
ENSRNOG00000019590	Smg5	86	72.048	ENSHCOG00000010229	smg5	84	77.273	Hippocampus_comes
ENSRNOG00000019590	Smg5	99	62.135	ENSIPUG00000006624	Smg5	99	61.953	Ictalurus_punctatus
ENSRNOG00000019590	Smg5	100	92.731	ENSSTOG00000001780	SMG5	100	93.026	Ictidomys_tridecemlineatus
ENSRNOG00000019590	Smg5	100	92.255	ENSJJAG00000022763	Smg5	100	92.451	Jaculus_jaculus
ENSRNOG00000019590	Smg5	50	59.890	ENSKMAG00000014586	smg5	99	61.264	Kryptolebias_marmoratus
ENSRNOG00000019590	Smg5	99	64.904	ENSLBEG00000002145	smg5	99	66.120	Labrus_bergylta
ENSRNOG00000019590	Smg5	100	64.008	ENSLACG00000010521	SMG5	100	64.605	Latimeria_chalumnae
ENSRNOG00000019590	Smg5	100	90.668	ENSLAFG00000006241	SMG5	100	90.373	Loxodonta_africana
ENSRNOG00000019590	Smg5	100	92.436	ENSMFAG00000045357	SMG5	100	92.829	Macaca_fascicularis
ENSRNOG00000019590	Smg5	100	92.436	ENSMMUG00000000090	SMG5	100	92.829	Macaca_mulatta
ENSRNOG00000019590	Smg5	100	92.338	ENSMNEG00000044425	SMG5	100	92.731	Macaca_nemestrina
ENSRNOG00000019590	Smg5	100	86.301	ENSMLEG00000041192	SMG5	100	86.497	Mandrillus_leucophaeus
ENSRNOG00000019590	Smg5	99	61.002	ENSMAMG00000010683	smg5	99	62.165	Mastacembelus_armatus
ENSRNOG00000019590	Smg5	99	63.785	ENSMZEG00005015815	smg5	99	65.005	Maylandia_zebra
ENSRNOG00000019590	Smg5	63	58.245	ENSMZEG00005016543	smg5	100	60.514	Maylandia_zebra
ENSRNOG00000019590	Smg5	100	96.755	ENSMAUG00000010381	Smg5	100	96.755	Mesocricetus_auratus
ENSRNOG00000019590	Smg5	55	44.541	ENSMAUG00000000043	-	96	44.367	Mesocricetus_auratus
ENSRNOG00000019590	Smg5	100	92.633	ENSMICG00000002257	SMG5	100	92.927	Microcebus_murinus
ENSRNOG00000019590	Smg5	100	96.369	ENSMOCG00000016590	Smg5	100	96.369	Microtus_ochrogaster
ENSRNOG00000019590	Smg5	99	58.818	ENSMMOG00000017199	smg5	99	59.643	Mola_mola
ENSRNOG00000019590	Smg5	74	40.107	ENSMODG00000004735	-	86	40.107	Monodelphis_domestica
ENSRNOG00000019590	Smg5	93	38.049	ENSMODG00000004532	-	98	38.133	Monodelphis_domestica
ENSRNOG00000019590	Smg5	76	38.287	ENSMODG00000010675	-	84	38.196	Monodelphis_domestica
ENSRNOG00000019590	Smg5	87	87.402	ENSMODG00000016901	SMG5	98	87.289	Monodelphis_domestica
ENSRNOG00000019590	Smg5	97	34.980	ENSMODG00000004511	-	99	34.283	Monodelphis_domestica
ENSRNOG00000019590	Smg5	99	59.394	ENSMALG00000010375	smg5	99	59.964	Monopterus_albus
ENSRNOG00000019590	Smg5	100	98.230	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSRNOG00000019590	Smg5	100	98.427	ENSMUSG00000001415	Smg5	100	98.427	Mus_musculus
ENSRNOG00000019590	Smg5	100	98.135	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSRNOG00000019590	Smg5	100	98.427	MGP_SPRETEiJ_G0026104	Smg5	100	98.427	Mus_spretus
ENSRNOG00000019590	Smg5	94	88.959	ENSMPUG00000004546	SMG5	100	89.169	Mustela_putorius_furo
ENSRNOG00000019590	Smg5	100	91.283	ENSMLUG00000008518	SMG5	100	91.773	Myotis_lucifugus
ENSRNOG00000019590	Smg5	100	93.517	ENSNGAG00000020706	Smg5	100	93.713	Nannospalax_galili
ENSRNOG00000019590	Smg5	98	44.589	ENSNGAG00000012101	-	98	45.145	Nannospalax_galili
ENSRNOG00000019590	Smg5	96	62.866	ENSNBRG00000004332	smg5	98	63.783	Neolamprologus_brichardi
ENSRNOG00000019590	Smg5	100	91.847	ENSNLEG00000012439	SMG5	100	92.141	Nomascus_leucogenys
ENSRNOG00000019590	Smg5	100	85.560	ENSMEUG00000012834	SMG5	100	85.462	Notamacropus_eugenii
ENSRNOG00000019590	Smg5	100	90.570	ENSOPRG00000009152	SMG5	100	90.668	Ochotona_princeps
ENSRNOG00000019590	Smg5	100	91.749	ENSODEG00000012237	SMG5	100	91.749	Octodon_degus
ENSRNOG00000019590	Smg5	89	40.984	ENSOCUG00000023338	-	99	40.765	Oryctolagus_cuniculus
ENSRNOG00000019590	Smg5	98	91.851	ENSOCUG00000012886	SMG5	100	92.052	Oryctolagus_cuniculus
ENSRNOG00000019590	Smg5	99	64.000	ENSORLG00020013127	smg5	99	65.460	Oryzias_latipes_hni
ENSRNOG00000019590	Smg5	99	63.619	ENSORLG00015019014	smg5	99	65.366	Oryzias_latipes_hsok
ENSRNOG00000019590	Smg5	82	58.754	ENSOMEG00000021330	smg5	92	60.324	Oryzias_melastigma
ENSRNOG00000019590	Smg5	100	91.159	ENSOGAG00000004966	SMG5	100	91.454	Otolemur_garnettii
ENSRNOG00000019590	Smg5	99	44.066	ENSOARG00000011963	-	99	44.195	Ovis_aries
ENSRNOG00000019590	Smg5	100	91.159	ENSOARG00000005778	SMG5	100	91.650	Ovis_aries
ENSRNOG00000019590	Smg5	100	92.141	ENSPPAG00000011996	SMG5	100	92.436	Pan_paniscus
ENSRNOG00000019590	Smg5	98	90.433	ENSPPRG00000011901	SMG5	100	91.037	Panthera_pardus
ENSRNOG00000019590	Smg5	99	82.488	ENSPTIG00000007892	SMG5	98	83.822	Panthera_tigris_altaica
ENSRNOG00000019590	Smg5	100	92.338	ENSPTRG00000023925	SMG5	100	92.633	Pan_troglodytes
ENSRNOG00000019590	Smg5	100	92.338	ENSPTRG00000049282	-	100	92.633	Pan_troglodytes
ENSRNOG00000019590	Smg5	100	92.534	ENSPANG00000011201	SMG5	100	92.927	Papio_anubis
ENSRNOG00000019590	Smg5	99	65.601	ENSPKIG00000009402	smg5	99	66.699	Paramormyrops_kingsleyae
ENSRNOG00000019590	Smg5	98	79.026	ENSPSIG00000015198	SMG5	100	79.026	Pelodiscus_sinensis
ENSRNOG00000019590	Smg5	99	59.673	ENSPMGG00000010465	smg5	99	60.055	Periophthalmus_magnuspinnatus
ENSRNOG00000019590	Smg5	100	97.443	ENSPEMG00000001819	Smg5	100	97.443	Peromyscus_maniculatus_bairdii
ENSRNOG00000019590	Smg5	56	45.979	ENSPEMG00000010022	-	95	45.280	Peromyscus_maniculatus_bairdii
ENSRNOG00000019590	Smg5	99	50.193	ENSPMAG00000000410	smg5	100	50.760	Petromyzon_marinus
ENSRNOG00000019590	Smg5	100	86.948	ENSPCIG00000018938	SMG5	100	86.850	Phascolarctos_cinereus
ENSRNOG00000019590	Smg5	99	65.607	ENSPMEG00000014105	smg5	99	65.833	Poecilia_mexicana
ENSRNOG00000019590	Smg5	50	60.781	ENSPREG00000017713	smg5	99	62.893	Poecilia_reticulata
ENSRNOG00000019590	Smg5	100	92.338	ENSPPYG00000000723	SMG5	100	92.633	Pongo_abelii
ENSRNOG00000019590	Smg5	75	96.133	ENSPCAG00000008412	SMG5	81	96.133	Procavia_capensis
ENSRNOG00000019590	Smg5	100	92.338	ENSPCOG00000004741	SMG5	100	92.633	Propithecus_coquereli
ENSRNOG00000019590	Smg5	100	82.301	ENSPVAG00000016748	SMG5	100	82.711	Pteropus_vampyrus
ENSRNOG00000019590	Smg5	91	64.871	ENSPNYG00000013397	smg5	99	60.758	Pundamilia_nyererei
ENSRNOG00000019590	Smg5	99	62.147	ENSPNAG00000028363	smg5	99	62.340	Pygocentrus_nattereri
ENSRNOG00000019590	Smg5	100	92.240	ENSRBIG00000027428	SMG5	100	92.633	Rhinopithecus_bieti
ENSRNOG00000019590	Smg5	100	92.141	ENSRROG00000030035	SMG5	100	92.534	Rhinopithecus_roxellana
ENSRNOG00000019590	Smg5	100	91.847	ENSSBOG00000033339	SMG5	100	92.141	Saimiri_boliviensis_boliviensis
ENSRNOG00000019590	Smg5	98	86.000	ENSSHAG00000014163	SMG5	100	85.900	Sarcophilus_harrisii
ENSRNOG00000019590	Smg5	99	33.172	ENSSHAG00000009572	-	79	42.607	Sarcophilus_harrisii
ENSRNOG00000019590	Smg5	64	39.766	ENSSHAG00000000935	-	92	40.244	Sarcophilus_harrisii
ENSRNOG00000019590	Smg5	85	39.276	ENSSHAG00000000561	-	86	39.633	Sarcophilus_harrisii
ENSRNOG00000019590	Smg5	99	65.986	ENSSFOG00015024175	smg5	99	65.474	Scleropages_formosus
ENSRNOG00000019590	Smg5	99	59.771	ENSSDUG00000007122	smg5	99	61.525	Seriola_dumerili
ENSRNOG00000019590	Smg5	99	60.000	ENSSLDG00000011418	smg5	99	61.833	Seriola_lalandi_dorsalis
ENSRNOG00000019590	Smg5	90	77.911	ENSSARG00000012484	SMG5	100	77.367	Sorex_araneus
ENSRNOG00000019590	Smg5	94	76.744	ENSSPUG00000002260	SMG5	100	76.052	Sphenodon_punctatus
ENSRNOG00000019590	Smg5	92	75.349	ENSSPAG00000014266	smg5	98	65.470	Stegastes_partitus
ENSRNOG00000019590	Smg5	100	92.338	ENSSSCG00000006490	-	100	92.927	Sus_scrofa
ENSRNOG00000019590	Smg5	99	71.850	ENSSSCG00000039308	-	100	71.949	Sus_scrofa
ENSRNOG00000019590	Smg5	99	79.368	ENSTGUG00000003748	-	100	79.240	Taeniopygia_guttata
ENSRNOG00000019590	Smg5	99	64.472	ENSTRUG00000012580	smg5	99	64.348	Takifugu_rubripes
ENSRNOG00000019590	Smg5	99	65.078	ENSTNIG00000010303	smg5	99	64.981	Tetraodon_nigroviridis
ENSRNOG00000019590	Smg5	60	99.015	ENSTBEG00000002777	SMG5	57	99.015	Tupaia_belangeri
ENSRNOG00000019590	Smg5	100	87.525	ENSTTRG00000001401	SMG5	100	86.935	Tursiops_truncatus
ENSRNOG00000019590	Smg5	100	89.676	ENSUAMG00000013721	SMG5	100	90.265	Ursus_americanus
ENSRNOG00000019590	Smg5	98	85.341	ENSUMAG00000018041	SMG5	97	85.944	Ursus_maritimus
ENSRNOG00000019590	Smg5	98	81.974	ENSVPAG00000009446	SMG5	99	82.175	Vicugna_pacos
ENSRNOG00000019590	Smg5	100	91.257	ENSVVUG00000005887	SMG5	100	91.347	Vulpes_vulpes
ENSRNOG00000019590	Smg5	77	64.906	ENSXETG00000033791	SMG5	99	64.528	Xenopus_tropicalis
ENSRNOG00000019590	Smg5	59	76.850	ENSXCOG00000004379	smg5	99	69.780	Xiphophorus_couchianus
ENSRNOG00000019590	Smg5	99	65.761	ENSXMAG00000013499	smg5	99	66.117	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0031625	ubiquitin protein ligase binding	-	IEA	Function
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0032204	regulation of telomere maintenance	-	ISO	Process
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0035303	regulation of dephosphorylation	-	IEA	Process
GO:0035303	regulation of dephosphorylation	-	ISO	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0042826	histone deacetylase binding	-	IEA	Function
GO:0042826	histone deacetylase binding	-	ISO	Function
GO:0051721	protein phosphatase 2A binding	-	IEA	Function
GO:0051721	protein phosphatase 2A binding	-	ISO	Function
GO:0070034	telomerase RNA binding	21873635.	IBA	Function
GO:0070034	telomerase RNA binding	-	ISO	Function