EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019817 (Gene tree)
Gene ID: 364995
Gene Symbol: Ddx28
Alias: LOC364995
Full Name: DEAD-box helicase 28
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 1931 bases
Position: chr19:37988423-37990353
Accession: 1311976
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026817	DEAD	PF00270.29	1.7e-35	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026817	-	1931	-	ENSRNOP00000026817	540 (aa)	-	D4A7Q5

Gene Model

Click here to download ENSRNOG00000019817's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019817's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000019817	Ddx28	72	32.061	ENSRNOG00000007838	Ddx47	78	32.061
ENSRNOG00000019817	Ddx28	66	31.667	ENSRNOG00000051170	Ddx17	51	31.667
ENSRNOG00000019817	Ddx28	71	31.298	ENSRNOG00000042451	Ddx59	58	31.298
ENSRNOG00000019817	Ddx28	68	31.328	ENSRNOG00000013040	Ddx31	56	31.328
ENSRNOG00000019817	Ddx28	70	30.628	ENSRNOG00000030680	Ddx5	57	30.628

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019817	Ddx28	99	78.625	ENSG00000182810	DDX28	99	78.625	Homo_sapiens
ENSRNOG00000019817	Ddx28	94	48.936	ENSAPOG00000000991	ddx28	89	48.936	Acanthochromis_polyacanthus
ENSRNOG00000019817	Ddx28	99	78.108	ENSAMEG00000019426	DDX28	99	77.180	Ailuropoda_melanoleuca
ENSRNOG00000019817	Ddx28	93	47.767	ENSACIG00000021615	ddx28	90	47.767	Amphilophus_citrinellus
ENSRNOG00000019817	Ddx28	94	48.936	ENSAOCG00000004610	ddx28	89	48.936	Amphiprion_ocellaris
ENSRNOG00000019817	Ddx28	94	48.743	ENSAPEG00000002143	ddx28	89	48.743	Amphiprion_percula
ENSRNOG00000019817	Ddx28	94	49.416	ENSATEG00000018691	ddx28	90	49.416	Anabas_testudineus
ENSRNOG00000019817	Ddx28	94	53.516	ENSACAG00000009755	DDX28	94	53.516	Anolis_carolinensis
ENSRNOG00000019817	Ddx28	93	46.809	ENSACLG00000012984	ddx28	89	46.809	Astatotilapia_calliptera
ENSRNOG00000019817	Ddx28	94	48.767	ENSAMXG00000005878	ddx28	91	48.767	Astyanax_mexicanus
ENSRNOG00000019817	Ddx28	96	80.000	ENSBTAG00000004290	DDX28	99	79.777	Bos_taurus
ENSRNOG00000019817	Ddx28	98	79.167	ENSCAFG00000020327	DDX28	99	79.167	Canis_familiaris
ENSRNOG00000019817	Ddx28	98	79.167	ENSCAFG00020019785	DDX28	99	79.167	Canis_lupus_dingo
ENSRNOG00000019817	Ddx28	96	79.383	ENSCHIG00000009658	DDX28	99	78.996	Capra_hircus
ENSRNOG00000019817	Ddx28	99	77.365	ENSCPOG00000013746	DDX28	97	78.269	Cavia_porcellus
ENSRNOG00000019817	Ddx28	99	76.994	ENSCSAG00000018472	DDX28	99	76.994	Chlorocebus_sabaeus
ENSRNOG00000019817	Ddx28	90	58.656	ENSCPBG00000012105	DDX28	87	58.656	Chrysemys_picta_bellii
ENSRNOG00000019817	Ddx28	68	39.247	ENSCSAVG00000006341	-	94	39.247	Ciona_savignyi
ENSRNOG00000019817	Ddx28	97	88.931	ENSCGRG00001024412	Ddx28	100	89.313	Cricetulus_griseus_chok1gshd
ENSRNOG00000019817	Ddx28	94	47.490	ENSCSEG00000011651	ddx28	90	47.490	Cynoglossus_semilaevis
ENSRNOG00000019817	Ddx28	94	49.320	ENSCVAG00000004044	ddx28	90	49.320	Cyprinodon_variegatus
ENSRNOG00000019817	Ddx28	94	49.225	ENSDARG00000060411	ddx28	91	49.225	Danio_rerio
ENSRNOG00000019817	Ddx28	68	81.199	ENSDNOG00000033593	DDX28	99	81.199	Dasypus_novemcinctus
ENSRNOG00000019817	Ddx28	100	78.148	ENSDORG00000028868	Ddx28	96	79.079	Dipodomys_ordii
ENSRNOG00000019817	Ddx28	88	33.884	FBgn0086130	Dbp21E2	87	33.951	Drosophila_melanogaster
ENSRNOG00000019817	Ddx28	99	77.365	ENSETEG00000001062	-	96	78.654	Echinops_telfairi
ENSRNOG00000019817	Ddx28	77	46.354	ENSEBUG00000004791	ddx28	80	46.632	Eptatretus_burgeri
ENSRNOG00000019817	Ddx28	99	81.633	ENSEASG00005020387	DDX28	99	81.633	Equus_asinus_asinus
ENSRNOG00000019817	Ddx28	99	81.262	ENSECAG00000006451	DDX28	99	81.262	Equus_caballus
ENSRNOG00000019817	Ddx28	78	70.167	ENSEEUG00000005017	DDX28	96	70.560	Erinaceus_europaeus
ENSRNOG00000019817	Ddx28	93	50.485	ENSELUG00000005302	ddx28	96	50.485	Esox_lucius
ENSRNOG00000019817	Ddx28	99	79.963	ENSFCAG00000012858	DDX28	99	79.963	Felis_catus
ENSRNOG00000019817	Ddx28	93	49.023	ENSFHEG00000012573	ddx28	90	49.023	Fundulus_heteroclitus
ENSRNOG00000019817	Ddx28	93	48.039	ENSGMOG00000017045	ddx28	95	48.039	Gadus_morhua
ENSRNOG00000019817	Ddx28	94	50.669	ENSGALG00000048700	DDX28	89	51.434	Gallus_gallus
ENSRNOG00000019817	Ddx28	93	48.343	ENSGAFG00000009249	ddx28	89	48.343	Gambusia_affinis
ENSRNOG00000019817	Ddx28	93	49.414	ENSGACG00000016367	ddx28	94	49.414	Gasterosteus_aculeatus
ENSRNOG00000019817	Ddx28	78	58.629	ENSGAGG00000004565	DDX28	92	58.629	Gopherus_agassizii
ENSRNOG00000019817	Ddx28	99	78.996	ENSGGOG00000001220	DDX28	99	78.996	Gorilla_gorilla
ENSRNOG00000019817	Ddx28	93	49.031	ENSHBUG00000001016	ddx28	90	49.031	Haplochromis_burtoni
ENSRNOG00000019817	Ddx28	95	46.449	ENSHCOG00000017590	ddx28	93	46.449	Hippocampus_comes
ENSRNOG00000019817	Ddx28	93	48.633	ENSIPUG00000017350	Ddx28	89	48.633	Ictalurus_punctatus
ENSRNOG00000019817	Ddx28	99	79.221	ENSSTOG00000002064	DDX28	99	79.221	Ictidomys_tridecemlineatus
ENSRNOG00000019817	Ddx28	99	77.819	ENSJJAG00000012460	-	99	77.819	Jaculus_jaculus
ENSRNOG00000019817	Ddx28	94	47.389	ENSKMAG00000018183	ddx28	90	47.389	Kryptolebias_marmoratus
ENSRNOG00000019817	Ddx28	93	49.020	ENSLBEG00000006072	ddx28	90	49.020	Labrus_bergylta
ENSRNOG00000019817	Ddx28	95	53.578	ENSLACG00000005578	DDX28	89	53.578	Latimeria_chalumnae
ENSRNOG00000019817	Ddx28	96	51.044	ENSLOCG00000017604	ddx28	92	51.044	Lepisosteus_oculatus
ENSRNOG00000019817	Ddx28	99	79.777	ENSLAFG00000031239	DDX28	99	79.777	Loxodonta_africana
ENSRNOG00000019817	Ddx28	99	77.180	ENSMMUG00000010836	DDX28	99	77.180	Macaca_mulatta
ENSRNOG00000019817	Ddx28	94	48.369	ENSMAMG00000020220	ddx28	90	48.369	Mastacembelus_armatus
ENSRNOG00000019817	Ddx28	93	48.936	ENSMZEG00005009292	ddx28	90	48.936	Maylandia_zebra
ENSRNOG00000019817	Ddx28	96	67.050	ENSMICG00000012346	-	99	67.037	Microcebus_murinus
ENSRNOG00000019817	Ddx28	99	89.610	ENSMOCG00000009815	Ddx28	99	89.610	Microtus_ochrogaster
ENSRNOG00000019817	Ddx28	95	47.801	ENSMMOG00000000270	ddx28	92	47.801	Mola_mola
ENSRNOG00000019817	Ddx28	96	69.052	ENSMODG00000005303	DDX28	94	69.364	Monodelphis_domestica
ENSRNOG00000019817	Ddx28	94	48.837	ENSMALG00000008864	ddx28	90	48.837	Monopterus_albus
ENSRNOG00000019817	Ddx28	99	91.837	MGP_CAROLIEiJ_G0031510	Ddx28	99	91.837	Mus_caroli
ENSRNOG00000019817	Ddx28	99	91.651	ENSMUSG00000045538	Ddx28	99	91.651	Mus_musculus
ENSRNOG00000019817	Ddx28	99	92.764	MGP_PahariEiJ_G0023110	Ddx28	99	92.764	Mus_pahari
ENSRNOG00000019817	Ddx28	99	91.651	MGP_SPRETEiJ_G0032628	Ddx28	99	91.651	Mus_spretus
ENSRNOG00000019817	Ddx28	75	78.412	ENSMPUG00000006915	DDX28	100	78.412	Mustela_putorius_furo
ENSRNOG00000019817	Ddx28	98	77.170	ENSMLUG00000005899	DDX28	98	77.170	Myotis_lucifugus
ENSRNOG00000019817	Ddx28	96	84.231	ENSNGAG00000015762	Ddx28	96	84.615	Nannospalax_galili
ENSRNOG00000019817	Ddx28	93	48.738	ENSNBRG00000001337	ddx28	91	48.738	Neolamprologus_brichardi
ENSRNOG00000019817	Ddx28	93	49.222	ENSONIG00000020597	ddx28	90	49.222	Oreochromis_niloticus
ENSRNOG00000019817	Ddx28	51	62.455	ENSOANG00000003551	-	96	62.455	Ornithorhynchus_anatinus
ENSRNOG00000019817	Ddx28	99	78.108	ENSOCUG00000023074	DDX28	99	78.108	Oryctolagus_cuniculus
ENSRNOG00000019817	Ddx28	93	48.256	ENSORLG00000011968	ddx28	90	48.256	Oryzias_latipes
ENSRNOG00000019817	Ddx28	93	48.062	ENSORLG00020001951	ddx28	91	48.062	Oryzias_latipes_hni
ENSRNOG00000019817	Ddx28	93	47.868	ENSORLG00015023030	ddx28	91	47.868	Oryzias_latipes_hsok
ENSRNOG00000019817	Ddx28	94	47.082	ENSOMEG00000012445	ddx28	90	47.082	Oryzias_melastigma
ENSRNOG00000019817	Ddx28	97	79.087	ENSOGAG00000016895	DDX28	99	78.704	Otolemur_garnettii
ENSRNOG00000019817	Ddx28	82	76.577	ENSOARG00000003313	DDX28	99	76.577	Ovis_aries
ENSRNOG00000019817	Ddx28	99	75.279	ENSPPAG00000036971	DDX28	99	75.279	Pan_paniscus
ENSRNOG00000019817	Ddx28	99	81.262	ENSPPRG00000018322	DDX28	99	81.262	Panthera_pardus
ENSRNOG00000019817	Ddx28	99	78.293	ENSPTIG00000006444	DDX28	99	78.293	Panthera_tigris_altaica
ENSRNOG00000019817	Ddx28	99	78.625	ENSPTRG00000008258	DDX28	99	78.625	Pan_troglodytes
ENSRNOG00000019817	Ddx28	93	50.584	ENSPKIG00000021200	ddx28	93	50.584	Paramormyrops_kingsleyae
ENSRNOG00000019817	Ddx28	55	62.752	ENSPSIG00000001127	DDX28	98	62.752	Pelodiscus_sinensis
ENSRNOG00000019817	Ddx28	92	46.351	ENSPMGG00000007908	ddx28	88	46.351	Periophthalmus_magnuspinnatus
ENSRNOG00000019817	Ddx28	99	88.725	ENSPEMG00000003395	Ddx28	99	88.725	Peromyscus_maniculatus_bairdii
ENSRNOG00000019817	Ddx28	52	48.936	ENSPMAG00000006983	DDX28	93	48.936	Petromyzon_marinus
ENSRNOG00000019817	Ddx28	93	48.538	ENSPFOG00000020952	ddx28	88	48.538	Poecilia_formosa
ENSRNOG00000019817	Ddx28	93	48.538	ENSPFOG00000020838	DDX28	89	48.538	Poecilia_formosa
ENSRNOG00000019817	Ddx28	93	48.538	ENSPLAG00000016292	ddx28	88	48.538	Poecilia_latipinna
ENSRNOG00000019817	Ddx28	93	48.538	ENSPMEG00000011311	ddx28	87	48.538	Poecilia_mexicana
ENSRNOG00000019817	Ddx28	93	48.249	ENSPREG00000002899	ddx28	88	48.249	Poecilia_reticulata
ENSRNOG00000019817	Ddx28	99	78.625	ENSPPYG00000007481	DDX28	100	78.625	Pongo_abelii
ENSRNOG00000019817	Ddx28	99	80.741	ENSPCOG00000024632	DDX28	99	80.741	Propithecus_coquereli
ENSRNOG00000019817	Ddx28	93	49.225	ENSPNYG00000018804	ddx28	90	49.225	Pundamilia_nyererei
ENSRNOG00000019817	Ddx28	94	49.711	ENSPNAG00000014597	ddx28	95	49.711	Pygocentrus_nattereri
ENSRNOG00000019817	Ddx28	94	49.143	ENSSFOG00015010181	ddx28	93	49.143	Scleropages_formosus
ENSRNOG00000019817	Ddx28	93	48.054	ENSSMAG00000006831	ddx28	94	48.054	Scophthalmus_maximus
ENSRNOG00000019817	Ddx28	93	47.379	ENSSDUG00000003257	ddx28	89	47.379	Seriola_dumerili
ENSRNOG00000019817	Ddx28	93	46.990	ENSSLDG00000004513	ddx28	89	46.990	Seriola_lalandi_dorsalis
ENSRNOG00000019817	Ddx28	99	76.623	ENSSARG00000014169	DDX28	99	76.623	Sorex_araneus
ENSRNOG00000019817	Ddx28	99	46.950	ENSSPAG00000000988	ddx28	90	48.928	Stegastes_partitus
ENSRNOG00000019817	Ddx28	99	79.963	ENSSSCG00000026038	DDX28	99	79.963	Sus_scrofa
ENSRNOG00000019817	Ddx28	96	46.935	ENSTRUG00000007815	ddx28	94	46.935	Takifugu_rubripes
ENSRNOG00000019817	Ddx28	94	47.140	ENSTNIG00000011352	ddx28	99	47.140	Tetraodon_nigroviridis
ENSRNOG00000019817	Ddx28	87	86.697	ENSTBEG00000017695	DDX28	87	86.697	Tupaia_belangeri
ENSRNOG00000019817	Ddx28	99	80.334	ENSUAMG00000016116	DDX28	99	80.334	Ursus_americanus
ENSRNOG00000019817	Ddx28	81	81.279	ENSUMAG00000019200	DDX28	89	81.279	Ursus_maritimus
ENSRNOG00000019817	Ddx28	81	76.027	ENSVVUG00000012876	DDX28	87	76.027	Vulpes_vulpes
ENSRNOG00000019817	Ddx28	94	51.085	ENSXETG00000005435	ddx28	99	51.085	Xenopus_tropicalis
ENSRNOG00000019817	Ddx28	93	48.928	ENSXCOG00000012364	ddx28	88	48.928	Xiphophorus_couchianus
ENSRNOG00000019817	Ddx28	93	49.123	ENSXMAG00000019603	ddx28	91	49.123	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0019843	rRNA binding	-	IEA	Function
GO:0019843	rRNA binding	-	ISO	Function
GO:0035770	ribonucleoprotein granule	-	IEA	Component
GO:0035770	ribonucleoprotein granule	-	ISO	Component
GO:0042645	mitochondrial nucleoid	-	IEA	Component
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:1902775	mitochondrial large ribosomal subunit assembly	-	IEA	Process
GO:1902775	mitochondrial large ribosomal subunit assembly	-	ISO	Process