EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019875 (Gene tree)
Gene ID: 29150
Gene Symbol: Matr3
Alias: P130/MAT3|snhg4
Full Name: matrin 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 29435 bases
Position: chr18:28361283-28390717
Accession: 3052
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026949	RRM_5	PF13893.6	1.8e-06	1	1
ENSRNOP00000073436	RRM_5	PF13893.6	1.8e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026949	-	3760	XM_006254534	ENSRNOP00000026949	845 (aa)	XP_006254596	A0A0G2JSR7
ENSRNOT00000083993	-	4541	-	ENSRNOP00000073436	845 (aa)	XP_017456375	A0A0G2JSR7

Gene Model

Click here to download ENSRNOG00000019875's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019875's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019875	Matr3	100	97.875	ENSG00000015479	MATR3	100	100.000	Homo_sapiens
ENSRNOG00000019875	Matr3	99	92.522	ENSAMEG00000011347	-	100	92.522	Ailuropoda_melanoleuca
ENSRNOG00000019875	Matr3	100	77.535	ENSAPLG00000008118	-	100	75.274	Anas_platyrhynchos
ENSRNOG00000019875	Matr3	99	71.638	ENSACAG00000016233	-	99	70.993	Anolis_carolinensis
ENSRNOG00000019875	Matr3	83	72.205	ENSANAG00000024654	-	99	72.205	Aotus_nancymaae
ENSRNOG00000019875	Matr3	100	97.521	ENSANAG00000022951	-	100	97.521	Aotus_nancymaae
ENSRNOG00000019875	Matr3	85	30.248	ENSAMXG00000010685	matr3l1.1	86	30.973	Astyanax_mexicanus
ENSRNOG00000019875	Matr3	86	34.783	ENSAMXG00000010681	matr3l1.1	77	32.135	Astyanax_mexicanus
ENSRNOG00000019875	Matr3	93	91.924	ENSBTAG00000006756	MATR3	99	91.924	Bos_taurus
ENSRNOG00000019875	Matr3	100	92.291	ENSCJAG00000006888	-	99	96.260	Callithrix_jacchus
ENSRNOG00000019875	Matr3	100	97.291	ENSCAFG00000001345	MATR3	100	97.291	Canis_familiaris
ENSRNOG00000019875	Matr3	99	94.601	ENSCAFG00020010504	-	98	97.636	Canis_lupus_dingo
ENSRNOG00000019875	Matr3	100	97.644	ENSCHIG00000025746	-	100	97.644	Capra_hircus
ENSRNOG00000019875	Matr3	100	97.757	ENSTSYG00000011028	-	100	97.757	Carlito_syrichta
ENSRNOG00000019875	Matr3	99	97.518	ENSCPOG00000014076	-	99	97.518	Cavia_porcellus
ENSRNOG00000019875	Matr3	100	97.757	ENSCCAG00000025074	-	100	97.757	Cebus_capucinus
ENSRNOG00000019875	Matr3	65	96.357	ENSCATG00000041304	-	98	96.357	Cercocebus_atys
ENSRNOG00000019875	Matr3	99	97.991	ENSCLAG00000015998	-	99	97.991	Chinchilla_lanigera
ENSRNOG00000019875	Matr3	100	97.993	ENSCSAG00000013075	-	100	97.993	Chlorocebus_sabaeus
ENSRNOG00000019875	Matr3	100	75.794	ENSCPBG00000006303	-	100	74.781	Chrysemys_picta_bellii
ENSRNOG00000019875	Matr3	100	96.576	ENSCANG00000028224	-	100	96.576	Colobus_angolensis_palliatus
ENSRNOG00000019875	Matr3	100	98.701	ENSCGRG00001020227	Matr3	100	98.701	Cricetulus_griseus_chok1gshd
ENSRNOG00000019875	Matr3	100	98.583	ENSCGRG00000011298	Matr3	100	98.583	Cricetulus_griseus_crigri
ENSRNOG00000019875	Matr3	89	32.143	ENSCSEG00000012682	matr3l1.1	91	32.143	Cynoglossus_semilaevis
ENSRNOG00000019875	Matr3	75	47.692	ENSCVAG00000005337	matr3l1.1	82	30.973	Cyprinodon_variegatus
ENSRNOG00000019875	Matr3	100	92.428	ENSDNOG00000037723	-	100	92.428	Dasypus_novemcinctus
ENSRNOG00000019875	Matr3	100	97.644	ENSEASG00005020857	-	100	97.644	Equus_asinus_asinus
ENSRNOG00000019875	Matr3	100	97.644	ENSECAG00000012882	MATR3	100	97.644	Equus_caballus
ENSRNOG00000019875	Matr3	86	30.539	ENSELUG00000021848	matr3l1.1	73	51.515	Esox_lucius
ENSRNOG00000019875	Matr3	75	39.216	ENSELUG00000021651	si:ch211-271b14.1	82	39.216	Esox_lucius
ENSRNOG00000019875	Matr3	100	97.527	ENSFCAG00000021911	-	100	97.527	Felis_catus
ENSRNOG00000019875	Matr3	100	75.602	ENSFALG00000003071	-	100	74.890	Ficedula_albicollis
ENSRNOG00000019875	Matr3	100	96.694	ENSFDAG00000017675	-	100	96.694	Fukomys_damarensis
ENSRNOG00000019875	Matr3	100	76.780	ENSGALG00000002478	MATR3	100	74.671	Gallus_gallus
ENSRNOG00000019875	Matr3	100	75.628	ENSGAGG00000011386	-	100	74.781	Gopherus_agassizii
ENSRNOG00000019875	Matr3	100	97.993	ENSGGOG00000007308	-	100	97.993	Gorilla_gorilla
ENSRNOG00000019875	Matr3	100	97.875	ENSHGLG00000004673	MATR3	100	97.875	Heterocephalus_glaber_female
ENSRNOG00000019875	Matr3	60	96.660	ENSHGLG00100006442	-	100	96.660	Heterocephalus_glaber_male
ENSRNOG00000019875	Matr3	57	37.222	ENSHCOG00000013223	matr3l1.1	84	30.717	Hippocampus_comes
ENSRNOG00000019875	Matr3	100	97.644	ENSSTOG00000014746	-	100	97.644	Ictidomys_tridecemlineatus
ENSRNOG00000019875	Matr3	100	97.166	ENSJJAG00000021710	-	100	97.166	Jaculus_jaculus
ENSRNOG00000019875	Matr3	60	69.155	ENSJJAG00000011022	-	100	69.352	Jaculus_jaculus
ENSRNOG00000019875	Matr3	99	55.809	ENSLACG00000006743	-	99	57.438	Latimeria_chalumnae
ENSRNOG00000019875	Matr3	100	92.849	ENSMFAG00000000634	-	98	96.539	Macaca_fascicularis
ENSRNOG00000019875	Matr3	100	92.849	ENSMMUG00000016741	MATR3	99	97.854	Macaca_mulatta
ENSRNOG00000019875	Matr3	60	96.825	ENSMMUG00000015963	-	99	96.825	Macaca_mulatta
ENSRNOG00000019875	Matr3	100	98.111	ENSMNEG00000042856	-	100	98.111	Macaca_nemestrina
ENSRNOG00000019875	Matr3	100	98.111	ENSMLEG00000041178	-	100	98.111	Mandrillus_leucophaeus
ENSRNOG00000019875	Matr3	72	55.556	ENSMAMG00000013840	matr3l1.1	80	36.905	Mastacembelus_armatus
ENSRNOG00000019875	Matr3	100	76.670	ENSMGAG00000001331	-	100	74.671	Meleagris_gallopavo
ENSRNOG00000019875	Matr3	100	98.463	ENSMAUG00000011647	Matr3	100	98.463	Mesocricetus_auratus
ENSRNOG00000019875	Matr3	64	94.495	ENSMICG00000012438	-	99	96.215	Microcebus_murinus
ENSRNOG00000019875	Matr3	100	98.465	ENSMOCG00000015711	Matr3	100	98.465	Microtus_ochrogaster
ENSRNOG00000019875	Matr3	100	90.515	ENSMODG00000011925	-	99	89.930	Monodelphis_domestica
ENSRNOG00000019875	Matr3	100	99.174	MGP_CAROLIEiJ_G0022108	Matr3	100	99.174	Mus_caroli
ENSRNOG00000019875	Matr3	100	99.174	ENSMUSG00000037236	Matr3	100	99.174	Mus_musculus
ENSRNOG00000019875	Matr3	100	99.055	MGP_PahariEiJ_G0018842	Matr3	100	99.055	Mus_pahari
ENSRNOG00000019875	Matr3	100	98.819	MGP_SPRETEiJ_G0023020	Matr3	100	98.819	Mus_spretus
ENSRNOG00000019875	Matr3	100	95.949	ENSMPUG00000009297	-	100	95.949	Mustela_putorius_furo
ENSRNOG00000019875	Matr3	100	96.706	ENSMLUG00000005798	-	99	96.706	Myotis_lucifugus
ENSRNOG00000019875	Matr3	100	98.583	ENSNGAG00000017452	Matr3	100	98.583	Nannospalax_galili
ENSRNOG00000019875	Matr3	100	98.111	ENSNLEG00000009093	-	100	98.111	Nomascus_leucogenys
ENSRNOG00000019875	Matr3	99	90.169	ENSOPRG00000016511	-	100	89.492	Ochotona_princeps
ENSRNOG00000019875	Matr3	99	97.518	ENSODEG00000003015	-	99	97.518	Octodon_degus
ENSRNOG00000019875	Matr3	100	97.757	ENSOCUG00000026311	MATR3	100	97.757	Oryctolagus_cuniculus
ENSRNOG00000019875	Matr3	55	34.444	ENSORLG00020009362	matr3l1.1	80	33.333	Oryzias_latipes_hni
ENSRNOG00000019875	Matr3	73	33.333	ENSORLG00015018551	matr3l1.1	81	33.333	Oryzias_latipes_hsok
ENSRNOG00000019875	Matr3	68	39.474	ENSOMEG00000022287	matr3l1.1	91	37.984	Oryzias_melastigma
ENSRNOG00000019875	Matr3	100	98.229	ENSOGAG00000010607	-	100	98.229	Otolemur_garnettii
ENSRNOG00000019875	Matr3	100	97.644	ENSOARG00000016931	-	99	97.644	Ovis_aries
ENSRNOG00000019875	Matr3	65	91.392	ENSPPAG00000026720	-	99	92.110	Pan_paniscus
ENSRNOG00000019875	Matr3	100	92.737	ENSPPAG00000001418	-	98	96.357	Pan_paniscus
ENSRNOG00000019875	Matr3	100	97.644	ENSPPRG00000008004	-	100	97.644	Panthera_pardus
ENSRNOG00000019875	Matr3	96	97.537	ENSPTIG00000010711	-	100	97.537	Panthera_tigris_altaica
ENSRNOG00000019875	Matr3	100	92.737	ENSPTRG00000017294	MATR3	98	96.357	Pan_troglodytes
ENSRNOG00000019875	Matr3	65	97.080	ENSPANG00000032489	-	99	97.080	Papio_anubis
ENSRNOG00000019875	Matr3	100	96.694	ENSPANG00000012018	-	100	96.694	Papio_anubis
ENSRNOG00000019875	Matr3	96	33.392	ENSPKIG00000000333	matr3l1.1	54	43.966	Paramormyrops_kingsleyae
ENSRNOG00000019875	Matr3	100	76.149	ENSPSIG00000014598	-	100	74.890	Pelodiscus_sinensis
ENSRNOG00000019875	Matr3	100	97.875	ENSPEMG00000020679	Matr3	100	97.875	Peromyscus_maniculatus_bairdii
ENSRNOG00000019875	Matr3	100	92.849	ENSPPYG00000015835	-	100	92.849	Pongo_abelii
ENSRNOG00000019875	Matr3	100	97.875	ENSPCOG00000025718	-	100	97.875	Propithecus_coquereli
ENSRNOG00000019875	Matr3	98	92.947	ENSPVAG00000015431	-	100	92.947	Pteropus_vampyrus
ENSRNOG00000019875	Matr3	65	96.539	ENSRBIG00000034713	-	98	96.539	Rhinopithecus_bieti
ENSRNOG00000019875	Matr3	100	96.458	ENSRROG00000043949	-	100	96.458	Rhinopithecus_roxellana
ENSRNOG00000019875	Matr3	100	95.750	ENSRROG00000039415	-	100	97.250	Rhinopithecus_roxellana
ENSRNOG00000019875	Matr3	100	97.757	ENSSBOG00000030159	-	100	97.757	Saimiri_boliviensis_boliviensis
ENSRNOG00000019875	Matr3	100	90.632	ENSSHAG00000010331	-	99	90.047	Sarcophilus_harrisii
ENSRNOG00000019875	Matr3	62	55.556	ENSSDUG00000015369	matr3l1.1	79	35.714	Seriola_dumerili
ENSRNOG00000019875	Matr3	99	75.164	ENSSPUG00000019236	-	99	74.587	Sphenodon_punctatus
ENSRNOG00000019875	Matr3	100	97.998	ENSSSCG00000014343	-	100	97.998	Sus_scrofa
ENSRNOG00000019875	Matr3	99	76.721	ENSTGUG00000014568	MATR3	99	75.219	Taeniopygia_guttata
ENSRNOG00000019875	Matr3	62	57.143	ENSTNIG00000003166	matr3l1.1	88	57.143	Tetraodon_nigroviridis
ENSRNOG00000019875	Matr3	85	97.775	ENSUAMG00000000097	-	97	97.775	Ursus_americanus
ENSRNOG00000019875	Matr3	100	97.055	ENSUMAG00000015808	-	100	97.055	Ursus_maritimus
ENSRNOG00000019875	Matr3	100	91.880	ENSVPAG00000006337	-	100	91.880	Vicugna_pacos
ENSRNOG00000019875	Matr3	100	97.409	ENSVVUG00000020287	-	100	97.409	Vulpes_vulpes
ENSRNOG00000019875	Matr3	100	52.678	ENSXETG00000003838	matr3	75	58.561	Xenopus_tropicalis
ENSRNOG00000019875	Matr3	64	58.537	ENSXMAG00000014107	-	70	57.143	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001825	blastocyst formation	-	IEA	Process
GO:0001825	blastocyst formation	-	ISO	Process
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0003170	heart valve development	-	IEA	Process
GO:0003170	heart valve development	-	ISO	Process
GO:0003281	ventricular septum development	-	IEA	Process
GO:0003281	ventricular septum development	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	16814881.	IDA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	16814881.	IDA	Component
GO:0008150	biological_process	-	ND	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010608	posttranscriptional regulation of gene expression	-	ISO	Process
GO:0016363	nuclear matrix	2033075.	IDA	Component
GO:0035198	miRNA binding	-	ISO	Function
GO:0035198	miRNA binding	-	ISS	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0045087	innate immune response	-	IEA	Process