EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000019892 (Gene tree)
Gene ID: 367314
Gene Symbol: Lrrfip1
Alias: LOC367314
Full Name: LRR binding FLII interacting protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 66907 bases
Position: chr9:98190829-98257735
Accession: 1359548
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000045021	LRRFIP	PF09738.9	3e-86	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000050191	-	3628	XM_006245456	ENSRNOP00000045021	738 (aa)	XP_006245518	Q66HF9

Gene Model

Click here to download ENSRNOG00000019892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000019892's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000019892	Lrrfip1	100	54.290	ENSG00000124831	LRRFIP1	100	59.060	Homo_sapiens
ENSRNOG00000019892	Lrrfip1	100	90.385	ENSBTAG00000005354	LRRFIP1	82	90.385	Bos_taurus
ENSRNOG00000019892	Lrrfip1	100	49.066	ENSCJAG00000000491	LRRFIP1	100	50.062	Callithrix_jacchus
ENSRNOG00000019892	Lrrfip1	85	55.075	ENSCAFG00020024621	LRRFIP1	84	61.170	Canis_lupus_dingo
ENSRNOG00000019892	Lrrfip1	100	50.311	ENSCCAG00000003358	LRRFIP1	64	84.314	Cebus_capucinus
ENSRNOG00000019892	Lrrfip1	100	51.553	ENSCATG00000040003	LRRFIP1	100	77.994	Cercocebus_atys
ENSRNOG00000019892	Lrrfip1	100	42.268	ENSCATG00000009576	-	70	59.331	Cercocebus_atys
ENSRNOG00000019892	Lrrfip1	100	50.496	ENSCANG00000039607	LRRFIP1	100	76.602	Colobus_angolensis_palliatus
ENSRNOG00000019892	Lrrfip1	100	50.490	ENSDNOG00000045810	LRRFIP1	100	49.939	Dasypus_novemcinctus
ENSRNOG00000019892	Lrrfip1	100	90.385	ENSEASG00005007354	LRRFIP1	85	90.385	Equus_asinus_asinus
ENSRNOG00000019892	Lrrfip1	100	90.385	ENSECAG00000016447	LRRFIP1	91	90.385	Equus_caballus
ENSRNOG00000019892	Lrrfip1	100	53.868	ENSGGOG00000008411	LRRFIP1	99	77.994	Gorilla_gorilla
ENSRNOG00000019892	Lrrfip1	100	53.125	ENSJJAG00000018949	Lrrfip1	100	52.468	Jaculus_jaculus
ENSRNOG00000019892	Lrrfip1	100	50.993	ENSMFAG00000035972	LRRFIP1	100	77.437	Macaca_fascicularis
ENSRNOG00000019892	Lrrfip1	100	50.868	ENSMMUG00000003386	LRRFIP1	100	77.437	Macaca_mulatta
ENSRNOG00000019892	Lrrfip1	84	76.875	ENSMMUG00000043450	-	97	76.875	Macaca_mulatta
ENSRNOG00000019892	Lrrfip1	100	51.365	ENSMNEG00000034659	LRRFIP1	100	78.273	Macaca_nemestrina
ENSRNOG00000019892	Lrrfip1	94	49.020	ENSMLEG00000038517	LRRFIP1	97	76.101	Mandrillus_leucophaeus
ENSRNOG00000019892	Lrrfip1	100	38.442	ENSMLEG00000034189	-	100	46.944	Mandrillus_leucophaeus
ENSRNOG00000019892	Lrrfip1	100	81.467	MGP_CAROLIEiJ_G0014414	Lrrfip1	100	81.467	Mus_caroli
ENSRNOG00000019892	Lrrfip1	100	82.133	ENSMUSG00000026305	Lrrfip1	100	82.133	Mus_musculus
ENSRNOG00000019892	Lrrfip1	100	81.501	MGP_PahariEiJ_G0027650	Lrrfip1	100	81.501	Mus_pahari
ENSRNOG00000019892	Lrrfip1	100	81.491	MGP_SPRETEiJ_G0015218	Lrrfip1	100	81.491	Mus_spretus
ENSRNOG00000019892	Lrrfip1	53	55.051	ENSMLUG00000023450	-	67	58.671	Myotis_lucifugus
ENSRNOG00000019892	Lrrfip1	96	46.594	ENSNLEG00000011097	-	96	47.943	Nomascus_leucogenys
ENSRNOG00000019892	Lrrfip1	100	46.252	ENSNLEG00000031548	-	76	54.496	Nomascus_leucogenys
ENSRNOG00000019892	Lrrfip1	94	46.273	ENSODEG00000010103	-	98	45.352	Octodon_degus
ENSRNOG00000019892	Lrrfip1	94	45.409	ENSOARG00000019011	LRRFIP1	82	71.865	Ovis_aries
ENSRNOG00000019892	Lrrfip1	85	54.041	ENSPPAG00000040290	-	77	54.127	Pan_paniscus
ENSRNOG00000019892	Lrrfip1	85	54.444	ENSPTRG00000051036	-	77	54.531	Pan_troglodytes
ENSRNOG00000019892	Lrrfip1	100	50.993	ENSPANG00000017841	LRRFIP1	100	77.994	Papio_anubis
ENSRNOG00000019892	Lrrfip1	100	51.056	ENSRBIG00000041081	LRRFIP1	56	32.701	Rhinopithecus_bieti
ENSRNOG00000019892	Lrrfip1	100	51.304	ENSRROG00000004323	LRRFIP1	56	33.175	Rhinopithecus_roxellana
ENSRNOG00000019892	Lrrfip1	100	78.333	ENSSBOG00000021844	LRRFIP1	99	75.698	Saimiri_boliviensis_boliviensis
ENSRNOG00000019892	Lrrfip1	51	56.613	ENSTTRG00000006182	LRRFIP1	51	56.481	Tursiops_truncatus
ENSRNOG00000019892	Lrrfip1	85	58.084	ENSUMAG00000011956	LRRFIP1	83	63.686	Ursus_maritimus
ENSRNOG00000019892	Lrrfip1	85	55.728	ENSVVUG00000001547	LRRFIP1	71	73.333	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003677	DNA binding	-	ISS	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0042803	protein homodimerization activity	-	IEA	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0051092	positive regulation of NF-kappaB transcription factor activity	-	IEA	Process
GO:0051092	positive regulation of NF-kappaB transcription factor activity	-	ISO	Process