EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000020412 (Gene tree)
Gene ID: 293671
Gene Symbol: Sf3b2
Alias: LOC293671|SAP145
Full Name: splicing factor 3b%2C subunit 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 19932 bases
Position: chr1:220645672-220665603
Accession: 1307159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000060335	DUF382	PF04037.13	1.1e-59	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068497	-	3224	XM_008760105	ENSRNOP00000060335	878 (aa)	XP_008758327	D3ZMS1

Gene Model

Click here to download ENSRNOG00000020412's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000020412's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000020412	Sf3b2	100	97.950	ENSG00000087365	SF3B2	100	98.750	Homo_sapiens
ENSRNOG00000020412	Sf3b2	95	68.605	ENSAPOG00000001974	sf3b2	80	73.619	Acanthochromis_polyacanthus
ENSRNOG00000020412	Sf3b2	100	95.778	ENSAMEG00000017206	SF3B2	100	95.778	Ailuropoda_melanoleuca
ENSRNOG00000020412	Sf3b2	97	67.314	ENSACIG00000000624	sf3b2	87	73.725	Amphilophus_citrinellus
ENSRNOG00000020412	Sf3b2	97	69.309	ENSAOCG00000009207	sf3b2	84	74.335	Amphiprion_ocellaris
ENSRNOG00000020412	Sf3b2	97	67.789	ENSAPEG00000002762	sf3b2	85	72.583	Amphiprion_percula
ENSRNOG00000020412	Sf3b2	100	65.683	ENSACAG00000008615	SF3B2	100	65.746	Anolis_carolinensis
ENSRNOG00000020412	Sf3b2	100	97.725	ENSANAG00000029120	SF3B2	100	97.725	Aotus_nancymaae
ENSRNOG00000020412	Sf3b2	86	71.613	ENSACLG00000014771	sf3b2	85	73.838	Astatotilapia_calliptera
ENSRNOG00000020412	Sf3b2	84	69.961	ENSAMXG00000007929	sf3b2	86	76.923	Astyanax_mexicanus
ENSRNOG00000020412	Sf3b2	100	95.662	ENSBTAG00000002778	SF3B2	100	95.662	Bos_taurus
ENSRNOG00000020412	Sf3b2	60	50.883	WBGene00021004	sftb-2	89	51.642	Caenorhabditis_elegans
ENSRNOG00000020412	Sf3b2	100	97.838	ENSCJAG00000001656	SF3B2	100	97.838	Callithrix_jacchus
ENSRNOG00000020412	Sf3b2	100	95.880	ENSCAFG00000013033	SF3B2	100	95.880	Canis_familiaris
ENSRNOG00000020412	Sf3b2	100	95.880	ENSCAFG00020015382	SF3B2	100	95.880	Canis_lupus_dingo
ENSRNOG00000020412	Sf3b2	100	95.768	ENSCHIG00000011211	SF3B2	100	95.768	Capra_hircus
ENSRNOG00000020412	Sf3b2	100	97.836	ENSTSYG00000000959	SF3B2	100	97.836	Carlito_syrichta
ENSRNOG00000020412	Sf3b2	61	95.789	ENSCAPG00000006065	SF3B2	93	98.305	Cavia_aperea
ENSRNOG00000020412	Sf3b2	91	96.985	ENSCPOG00000008294	SF3B2	100	96.985	Cavia_porcellus
ENSRNOG00000020412	Sf3b2	100	97.838	ENSCCAG00000035256	SF3B2	100	97.838	Cebus_capucinus
ENSRNOG00000020412	Sf3b2	100	98.064	ENSCATG00000042240	SF3B2	100	98.064	Cercocebus_atys
ENSRNOG00000020412	Sf3b2	100	98.178	ENSCLAG00000016852	SF3B2	100	98.178	Chinchilla_lanigera
ENSRNOG00000020412	Sf3b2	100	96.201	ENSCSAG00000008121	SF3B2	100	96.201	Chlorocebus_sabaeus
ENSRNOG00000020412	Sf3b2	91	99.485	ENSCHOG00000001476	SF3B2	77	91.237	Choloepus_hoffmanni
ENSRNOG00000020412	Sf3b2	85	81.120	ENSCPBG00000022465	SF3B2	87	86.520	Chrysemys_picta_bellii
ENSRNOG00000020412	Sf3b2	74	59.509	ENSCING00000005665	-	99	60.063	Ciona_intestinalis
ENSRNOG00000020412	Sf3b2	71	59.969	ENSCSAVG00000002029	-	99	59.306	Ciona_savignyi
ENSRNOG00000020412	Sf3b2	100	98.064	ENSCANG00000039680	SF3B2	100	98.064	Colobus_angolensis_palliatus
ENSRNOG00000020412	Sf3b2	100	99.431	ENSCGRG00001015741	Sf3b2	100	99.431	Cricetulus_griseus_chok1gshd
ENSRNOG00000020412	Sf3b2	100	99.431	ENSCGRG00000018110	Sf3b2	100	99.431	Cricetulus_griseus_crigri
ENSRNOG00000020412	Sf3b2	75	75.000	ENSCSEG00000000230	sf3b2	78	77.129	Cynoglossus_semilaevis
ENSRNOG00000020412	Sf3b2	97	68.525	ENSCVAG00000003357	sf3b2	85	73.307	Cyprinodon_variegatus
ENSRNOG00000020412	Sf3b2	82	71.896	ENSDARG00000018049	sf3b2	86	72.320	Danio_rerio
ENSRNOG00000020412	Sf3b2	100	94.321	ENSDNOG00000009484	SF3B2	100	96.370	Dasypus_novemcinctus
ENSRNOG00000020412	Sf3b2	100	97.838	ENSDORG00000002495	Sf3b2	100	97.838	Dipodomys_ordii
ENSRNOG00000020412	Sf3b2	84	88.889	ENSETEG00000020284	SF3B2	85	88.759	Echinops_telfairi
ENSRNOG00000020412	Sf3b2	98	57.313	ENSEBUG00000013703	sf3b2	99	59.320	Eptatretus_burgeri
ENSRNOG00000020412	Sf3b2	100	95.551	ENSEASG00005004508	SF3B2	100	95.551	Equus_asinus_asinus
ENSRNOG00000020412	Sf3b2	100	95.551	ENSECAG00000024461	SF3B2	100	95.551	Equus_caballus
ENSRNOG00000020412	Sf3b2	62	100.000	ENSEEUG00000014278	-	60	100.000	Erinaceus_europaeus
ENSRNOG00000020412	Sf3b2	97	65.180	ENSELUG00000005586	sf3b2	84	72.520	Esox_lucius
ENSRNOG00000020412	Sf3b2	100	97.843	ENSFCAG00000013289	SF3B2	100	97.843	Felis_catus
ENSRNOG00000020412	Sf3b2	80	69.832	ENSFALG00000014653	SF3B2	98	68.732	Ficedula_albicollis
ENSRNOG00000020412	Sf3b2	100	97.282	ENSFDAG00000019806	SF3B2	100	97.282	Fukomys_damarensis
ENSRNOG00000020412	Sf3b2	84	71.805	ENSFHEG00000020968	sf3b2	86	72.032	Fundulus_heteroclitus
ENSRNOG00000020412	Sf3b2	74	78.015	ENSGMOG00000012131	sf3b2	96	80.630	Gadus_morhua
ENSRNOG00000020412	Sf3b2	97	68.679	ENSGAFG00000001675	sf3b2	86	72.991	Gambusia_affinis
ENSRNOG00000020412	Sf3b2	74	79.077	ENSGACG00000019012	sf3b2	96	80.159	Gasterosteus_aculeatus
ENSRNOG00000020412	Sf3b2	100	79.571	ENSGAGG00000023916	SF3B2	86	83.802	Gopherus_agassizii
ENSRNOG00000020412	Sf3b2	100	96.942	ENSGGOG00000028448	SF3B2	100	99.150	Gorilla_gorilla
ENSRNOG00000020412	Sf3b2	86	71.742	ENSHBUG00000017349	sf3b2	85	73.838	Haplochromis_burtoni
ENSRNOG00000020412	Sf3b2	100	98.064	ENSHGLG00000010807	SF3B2	100	98.064	Heterocephalus_glaber_female
ENSRNOG00000020412	Sf3b2	100	98.064	ENSHGLG00100006361	SF3B2	100	98.064	Heterocephalus_glaber_male
ENSRNOG00000020412	Sf3b2	97	65.158	ENSHCOG00000016203	sf3b2	83	69.714	Hippocampus_comes
ENSRNOG00000020412	Sf3b2	97	65.873	ENSIPUG00000009383	sf3b2	83	71.545	Ictalurus_punctatus
ENSRNOG00000020412	Sf3b2	100	98.747	ENSSTOG00000028892	SF3B2	100	98.747	Ictidomys_tridecemlineatus
ENSRNOG00000020412	Sf3b2	100	98.297	ENSJJAG00000018193	Sf3b2	100	98.297	Jaculus_jaculus
ENSRNOG00000020412	Sf3b2	60	87.970	ENSKMAG00000020181	sf3b2	83	71.946	Kryptolebias_marmoratus
ENSRNOG00000020412	Sf3b2	97	67.200	ENSLBEG00000027739	sf3b2	88	78.268	Labrus_bergylta
ENSRNOG00000020412	Sf3b2	79	80.878	ENSLACG00000010429	SF3B2	93	74.550	Latimeria_chalumnae
ENSRNOG00000020412	Sf3b2	100	97.162	ENSLAFG00000002128	SF3B2	100	97.162	Loxodonta_africana
ENSRNOG00000020412	Sf3b2	100	97.952	ENSMFAG00000003064	SF3B2	100	97.952	Macaca_fascicularis
ENSRNOG00000020412	Sf3b2	100	93.622	ENSMMUG00000011743	SF3B2	100	93.622	Macaca_mulatta
ENSRNOG00000020412	Sf3b2	100	96.723	ENSMNEG00000034437	SF3B2	100	96.723	Macaca_nemestrina
ENSRNOG00000020412	Sf3b2	100	96.610	ENSMLEG00000029373	SF3B2	100	96.610	Mandrillus_leucophaeus
ENSRNOG00000020412	Sf3b2	84	71.907	ENSMAMG00000014103	sf3b2	86	73.333	Mastacembelus_armatus
ENSRNOG00000020412	Sf3b2	86	71.613	ENSMZEG00005020789	sf3b2	84	73.838	Maylandia_zebra
ENSRNOG00000020412	Sf3b2	64	99.024	ENSMAUG00000017040	Sf3b2	100	99.024	Mesocricetus_auratus
ENSRNOG00000020412	Sf3b2	100	92.196	ENSMICG00000016942	-	97	92.085	Microcebus_murinus
ENSRNOG00000020412	Sf3b2	100	97.608	ENSMICG00000008565	-	100	97.608	Microcebus_murinus
ENSRNOG00000020412	Sf3b2	100	99.317	ENSMOCG00000003136	Sf3b2	100	99.317	Microtus_ochrogaster
ENSRNOG00000020412	Sf3b2	72	88.031	ENSMODG00000025020	-	99	87.087	Monodelphis_domestica
ENSRNOG00000020412	Sf3b2	85	90.861	ENSMODG00000008490	-	92	92.706	Monodelphis_domestica
ENSRNOG00000020412	Sf3b2	86	69.010	ENSMALG00000015137	sf3b2	76	78.834	Monopterus_albus
ENSRNOG00000020412	Sf3b2	100	98.292	MGP_CAROLIEiJ_G0022539	Sf3b2	100	98.292	Mus_caroli
ENSRNOG00000020412	Sf3b2	100	99.089	ENSMUSG00000024853	Sf3b2	100	99.089	Mus_musculus
ENSRNOG00000020412	Sf3b2	100	98.861	MGP_PahariEiJ_G0014036	Sf3b2	100	98.861	Mus_pahari
ENSRNOG00000020412	Sf3b2	100	98.975	MGP_SPRETEiJ_G0023453	Sf3b2	100	98.975	Mus_spretus
ENSRNOG00000020412	Sf3b2	100	95.768	ENSMPUG00000011349	SF3B2	100	95.768	Mustela_putorius_furo
ENSRNOG00000020412	Sf3b2	100	94.549	ENSMLUG00000011136	SF3B2	100	94.549	Myotis_lucifugus
ENSRNOG00000020412	Sf3b2	100	98.519	ENSNGAG00000012103	Sf3b2	100	98.519	Nannospalax_galili
ENSRNOG00000020412	Sf3b2	100	91.995	ENSNLEG00000006007	SF3B2	100	91.134	Nomascus_leucogenys
ENSRNOG00000020412	Sf3b2	76	92.898	ENSMEUG00000000019	SF3B2	80	92.898	Notamacropus_eugenii
ENSRNOG00000020412	Sf3b2	100	94.077	ENSODEG00000017764	SF3B2	100	94.077	Octodon_degus
ENSRNOG00000020412	Sf3b2	97	67.007	ENSONIG00000013068	sf3b2	87	74.670	Oreochromis_niloticus
ENSRNOG00000020412	Sf3b2	87	80.745	ENSOANG00000012482	SF3B2	97	80.933	Ornithorhynchus_anatinus
ENSRNOG00000020412	Sf3b2	100	90.838	ENSOCUG00000015722	-	100	90.503	Oryctolagus_cuniculus
ENSRNOG00000020412	Sf3b2	62	64.695	ENSOCUG00000024154	-	100	64.880	Oryctolagus_cuniculus
ENSRNOG00000020412	Sf3b2	97	66.176	ENSORLG00000008235	sf3b2	85	71.879	Oryzias_latipes
ENSRNOG00000020412	Sf3b2	97	66.176	ENSORLG00020005357	sf3b2	88	71.879	Oryzias_latipes_hni
ENSRNOG00000020412	Sf3b2	97	66.290	ENSORLG00015022454	sf3b2	82	78.006	Oryzias_latipes_hsok
ENSRNOG00000020412	Sf3b2	97	65.371	ENSOMEG00000017480	sf3b2	84	74.827	Oryzias_melastigma
ENSRNOG00000020412	Sf3b2	100	89.721	ENSOGAG00000005799	SF3B2	100	90.279	Otolemur_garnettii
ENSRNOG00000020412	Sf3b2	100	93.991	ENSOARG00000002125	SF3B2	100	95.257	Ovis_aries
ENSRNOG00000020412	Sf3b2	100	96.089	ENSPPAG00000007359	SF3B2	100	96.089	Pan_paniscus
ENSRNOG00000020412	Sf3b2	100	97.843	ENSPPRG00000013334	SF3B2	100	97.843	Panthera_pardus
ENSRNOG00000020412	Sf3b2	100	97.730	ENSPTIG00000015022	SF3B2	100	97.730	Panthera_tigris_altaica
ENSRNOG00000020412	Sf3b2	100	96.089	ENSPTRG00000003912	SF3B2	100	96.089	Pan_troglodytes
ENSRNOG00000020412	Sf3b2	100	98.064	ENSPANG00000008593	SF3B2	100	98.064	Papio_anubis
ENSRNOG00000020412	Sf3b2	97	67.080	ENSPKIG00000016576	sf3b2	86	79.463	Paramormyrops_kingsleyae
ENSRNOG00000020412	Sf3b2	93	80.700	ENSPSIG00000003158	SF3B2	97	82.999	Pelodiscus_sinensis
ENSRNOG00000020412	Sf3b2	84	66.710	ENSPMGG00000000819	sf3b2	84	66.667	Periophthalmus_magnuspinnatus
ENSRNOG00000020412	Sf3b2	100	99.431	ENSPEMG00000015437	Sf3b2	100	99.431	Peromyscus_maniculatus_bairdii
ENSRNOG00000020412	Sf3b2	93	84.294	ENSPEMG00000015451	-	100	84.172	Peromyscus_maniculatus_bairdii
ENSRNOG00000020412	Sf3b2	85	90.451	ENSPCIG00000008381	SF3B2	88	92.297	Phascolarctos_cinereus
ENSRNOG00000020412	Sf3b2	97	67.731	ENSPFOG00000002552	sf3b2	86	73.254	Poecilia_formosa
ENSRNOG00000020412	Sf3b2	97	67.845	ENSPLAG00000001471	sf3b2	86	73.123	Poecilia_latipinna
ENSRNOG00000020412	Sf3b2	97	67.694	ENSPMEG00000013180	sf3b2	86	73.219	Poecilia_mexicana
ENSRNOG00000020412	Sf3b2	84	71.995	ENSPREG00000002665	sf3b2	86	72.632	Poecilia_reticulata
ENSRNOG00000020412	Sf3b2	74	93.741	ENSPPYG00000003034	-	99	93.741	Pongo_abelii
ENSRNOG00000020412	Sf3b2	100	94.989	ENSPCAG00000005129	SF3B2	100	94.989	Procavia_capensis
ENSRNOG00000020412	Sf3b2	100	97.722	ENSPCOG00000025375	SF3B2	100	97.722	Propithecus_coquereli
ENSRNOG00000020412	Sf3b2	56	98.832	ENSPVAG00000016975	-	55	98.832	Pteropus_vampyrus
ENSRNOG00000020412	Sf3b2	54	98.684	ENSPVAG00000005466	-	80	98.684	Pteropus_vampyrus
ENSRNOG00000020412	Sf3b2	81	73.269	ENSPNYG00000023594	sf3b2	92	73.901	Pundamilia_nyererei
ENSRNOG00000020412	Sf3b2	97	66.742	ENSPNAG00000001891	sf3b2	81	73.706	Pygocentrus_nattereri
ENSRNOG00000020412	Sf3b2	100	97.950	ENSRBIG00000034065	SF3B2	100	97.950	Rhinopithecus_bieti
ENSRNOG00000020412	Sf3b2	100	97.950	ENSRROG00000034496	SF3B2	100	97.950	Rhinopithecus_roxellana
ENSRNOG00000020412	Sf3b2	100	93.466	ENSSBOG00000026337	SF3B2	100	93.688	Saimiri_boliviensis_boliviensis
ENSRNOG00000020412	Sf3b2	96	69.338	ENSSHAG00000018043	-	100	70.116	Sarcophilus_harrisii
ENSRNOG00000020412	Sf3b2	85	85.640	ENSSHAG00000010933	-	84	86.423	Sarcophilus_harrisii
ENSRNOG00000020412	Sf3b2	97	66.740	ENSSFOG00015021125	sf3b2	81	74.694	Scleropages_formosus
ENSRNOG00000020412	Sf3b2	60	87.476	ENSSMAG00000004079	sf3b2	88	73.377	Scophthalmus_maximus
ENSRNOG00000020412	Sf3b2	60	88.235	ENSSDUG00000008499	sf3b2	85	70.930	Seriola_dumerili
ENSRNOG00000020412	Sf3b2	60	88.235	ENSSLDG00000006838	sf3b2	86	74.902	Seriola_lalandi_dorsalis
ENSRNOG00000020412	Sf3b2	52	99.206	ENSSARG00000003707	-	53	99.206	Sorex_araneus
ENSRNOG00000020412	Sf3b2	100	81.038	ENSSPUG00000009198	SF3B2	85	83.690	Sphenodon_punctatus
ENSRNOG00000020412	Sf3b2	97	66.630	ENSSPAG00000004406	sf3b2	86	73.072	Stegastes_partitus
ENSRNOG00000020412	Sf3b2	100	95.212	ENSSSCG00000012957	SF3B2	100	95.212	Sus_scrofa
ENSRNOG00000020412	Sf3b2	97	54.514	ENSTRUG00000007611	sf3b2	88	71.607	Takifugu_rubripes
ENSRNOG00000020412	Sf3b2	86	70.026	ENSTNIG00000007441	sf3b2	88	68.675	Tetraodon_nigroviridis
ENSRNOG00000020412	Sf3b2	91	96.512	ENSTBEG00000004258	SF3B2	82	99.286	Tupaia_belangeri
ENSRNOG00000020412	Sf3b2	100	95.434	ENSTTRG00000014339	SF3B2	100	95.434	Tursiops_truncatus
ENSRNOG00000020412	Sf3b2	100	93.993	ENSUAMG00000020754	SF3B2	99	95.116	Ursus_americanus
ENSRNOG00000020412	Sf3b2	100	95.991	ENSUMAG00000010994	SF3B2	100	95.991	Ursus_maritimus
ENSRNOG00000020412	Sf3b2	67	99.153	ENSVPAG00000008695	SF3B2	63	99.153	Vicugna_pacos
ENSRNOG00000020412	Sf3b2	100	95.768	ENSVVUG00000027029	SF3B2	100	95.768	Vulpes_vulpes
ENSRNOG00000020412	Sf3b2	87	71.392	ENSXETG00000008422	sf3b2	87	78.102	Xenopus_tropicalis
ENSRNOG00000020412	Sf3b2	72	78.095	ENSXCOG00000008943	sf3b2	84	77.937	Xiphophorus_couchianus
ENSRNOG00000020412	Sf3b2	97	67.727	ENSXMAG00000008467	sf3b2	86	72.215	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	14724321.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component