EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000020438 (Gene tree)
Gene ID: 499691
Gene Symbol: Prpf38b
Alias: LOC499691
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 9084 bases
Position: chr2:211706228-211715311
Accession: 1562940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000027738	PRP38	PF03371.15	1.6e-57	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000027738	-	3051	XM_006233172	ENSRNOP00000027738	542 (aa)	XP_006233234	Q6AXY7

Gene Model

Click here to download ENSRNOG00000020438's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000020438's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000020438	Prpf38b	81	63.991	ENSATEG00000014482	-	59	84.000	Anabas_testudineus
ENSRNOG00000020438	Prpf38b	100	93.028	ENSBTAG00000047874	PRPF38B	100	91.193	Bos_taurus
ENSRNOG00000020438	Prpf38b	100	83.577	ENSCAFG00020010992	-	100	81.204	Canis_lupus_dingo
ENSRNOG00000020438	Prpf38b	100	93.028	ENSCHIG00000024357	-	100	91.193	Capra_hircus
ENSRNOG00000020438	Prpf38b	80	87.356	ENSCAPG00000009606	-	98	90.024	Cavia_aperea
ENSRNOG00000020438	Prpf38b	100	89.762	ENSCPOG00000039545	-	100	90.676	Cavia_porcellus
ENSRNOG00000020438	Prpf38b	100	90.693	ENSCLAG00000005801	-	100	91.423	Chinchilla_lanigera
ENSRNOG00000020438	Prpf38b	65	82.955	ENSCHOG00000008972	-	99	80.057	Choloepus_hoffmanni
ENSRNOG00000020438	Prpf38b	100	82.696	ENSCPBG00000028299	-	100	82.878	Chrysemys_picta_bellii
ENSRNOG00000020438	Prpf38b	91	59.761	ENSCSEG00000015030	-	59	81.818	Cynoglossus_semilaevis
ENSRNOG00000020438	Prpf38b	83	91.353	ENSETEG00000014690	-	100	90.687	Echinops_telfairi
ENSRNOG00000020438	Prpf38b	57	71.290	ENSELUG00000010390	-	50	79.926	Esox_lucius
ENSRNOG00000020438	Prpf38b	83	84.245	ENSFALG00000002673	-	89	83.151	Ficedula_albicollis
ENSRNOG00000020438	Prpf38b	87	60.575	ENSGMOG00000012080	-	58	81.319	Gadus_morhua
ENSRNOG00000020438	Prpf38b	100	84.755	ENSGALG00000001972	-	100	83.060	Gallus_gallus
ENSRNOG00000020438	Prpf38b	83	61.834	ENSGAFG00000008943	-	59	85.036	Gambusia_affinis
ENSRNOG00000020438	Prpf38b	100	85.428	ENSGAGG00000001563	-	100	83.607	Gopherus_agassizii
ENSRNOG00000020438	Prpf38b	100	90.328	ENSHGLG00000016583	PRPF38B	100	91.241	Heterocephalus_glaber_female
ENSRNOG00000020438	Prpf38b	100	90.146	ENSHGLG00100015525	-	100	91.058	Heterocephalus_glaber_male
ENSRNOG00000020438	Prpf38b	80	60.814	ENSKMAG00000005540	-	57	81.852	Kryptolebias_marmoratus
ENSRNOG00000020438	Prpf38b	97	71.245	ENSLACG00000015511	-	50	91.852	Latimeria_chalumnae
ENSRNOG00000020438	Prpf38b	100	96.507	ENSMOCG00000020285	-	100	96.507	Microtus_ochrogaster
ENSRNOG00000020438	Prpf38b	80	64.798	ENSMMOG00000011639	-	59	82.909	Mola_mola
ENSRNOG00000020438	Prpf38b	60	93.656	ENSMODG00000002350	-	100	88.929	Monodelphis_domestica
ENSRNOG00000020438	Prpf38b	81	64.208	ENSMALG00000019479	-	59	84.364	Monopterus_albus
ENSRNOG00000020438	Prpf38b	80	90.769	ENSOPRG00000013543	-	81	90.769	Ochotona_princeps
ENSRNOG00000020438	Prpf38b	82	65.227	ENSONIG00000010129	-	59	84.000	Oreochromis_niloticus
ENSRNOG00000020438	Prpf38b	91	80.000	ENSOANG00000007343	-	97	90.549	Ornithorhynchus_anatinus
ENSRNOG00000020438	Prpf38b	84	62.979	ENSORLG00000015621	-	87	92.763	Oryzias_latipes
ENSRNOG00000020438	Prpf38b	84	63.191	ENSORLG00020016276	-	87	92.763	Oryzias_latipes_hni
ENSRNOG00000020438	Prpf38b	82	64.488	ENSORLG00015016270	-	71	94.558	Oryzias_latipes_hsok
ENSRNOG00000020438	Prpf38b	84	63.404	ENSOMEG00000022050	-	89	92.208	Oryzias_melastigma
ENSRNOG00000020438	Prpf38b	100	91.241	ENSOGAG00000027048	-	100	90.693	Otolemur_garnettii
ENSRNOG00000020438	Prpf38b	100	91.193	ENSOARG00000018899	-	100	88.624	Ovis_aries
ENSRNOG00000020438	Prpf38b	97	62.011	ENSPKIG00000004815	-	57	82.237	Paramormyrops_kingsleyae
ENSRNOG00000020438	Prpf38b	94	64.481	ENSPKIG00000017291	-	53	78.033	Paramormyrops_kingsleyae
ENSRNOG00000020438	Prpf38b	100	84.335	ENSPSIG00000016569	-	100	83.242	Pelodiscus_sinensis
ENSRNOG00000020438	Prpf38b	83	63.113	ENSPFOG00000004025	-	78	95.238	Poecilia_formosa
ENSRNOG00000020438	Prpf38b	83	63.113	ENSPLAG00000019842	-	59	85.401	Poecilia_latipinna
ENSRNOG00000020438	Prpf38b	88	62.733	ENSPMEG00000004807	-	57	85.401	Poecilia_mexicana
ENSRNOG00000020438	Prpf38b	71	70.000	ENSPREG00000015599	-	80	95.238	Poecilia_reticulata
ENSRNOG00000020438	Prpf38b	51	84.643	ENSPNAG00000017484	-	53	85.455	Pygocentrus_nattereri
ENSRNOG00000020438	Prpf38b	91	63.956	ENSSFOG00015011251	-	79	97.351	Scleropages_formosus
ENSRNOG00000020438	Prpf38b	84	63.466	ENSSLDG00000023487	-	82	92.763	Seriola_lalandi_dorsalis
ENSRNOG00000020438	Prpf38b	100	82.459	ENSSPUG00000017742	-	100	80.909	Sphenodon_punctatus
ENSRNOG00000020438	Prpf38b	72	68.939	ENSTRUG00000011765	-	59	82.971	Takifugu_rubripes
ENSRNOG00000020438	Prpf38b	51	80.212	ENSTNIG00000015299	-	68	82.971	Tetraodon_nigroviridis
ENSRNOG00000020438	Prpf38b	94	86.497	ENSTBEG00000007504	-	100	87.084	Tupaia_belangeri
ENSRNOG00000020438	Prpf38b	100	91.575	ENSTTRG00000006479	-	100	91.758	Tursiops_truncatus
ENSRNOG00000020438	Prpf38b	99	82.537	ENSVPAG00000005541	-	99	83.088	Vicugna_pacos
ENSRNOG00000020438	Prpf38b	89	75.052	ENSXETG00000005260	prpf38b	96	65.437	Xenopus_tropicalis
ENSRNOG00000020438	Prpf38b	84	61.975	ENSXCOG00000008329	-	59	85.036	Xiphophorus_couchianus
ENSRNOG00000020438	Prpf38b	84	61.975	ENSXMAG00000023831	-	59	85.036	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071011	precatalytic spliceosome	21873635.	IBA	Component