EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000020715 (Gene tree)
Gene ID
64470
Gene Symbol
Ddb1
Alias
LOC361731
Full Name
damage-specific DNA binding protein 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
25787 bases
Position
chr1:226657561-226683347
Accession
621889
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000028188CPSF_APF03178.154.5e-8611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000028188-4236XM_006231071ENSRNOP000000281881140 (aa)XP_006231133G3V8T4
Gene Model
Click here to download ENSRNOG00000020715's gene model file
Pathways
Pathway IDPathway NameSource
rno03420Nucleotide excision repairKEGG
rno04120Ubiquitin mediated proteolysisKEGG
rno05161Hepatitis BKEGG
rno05170Human immunodeficiency virus 1 infectionKEGG
rno05203Viral carcinogenesisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000020715's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000020715Ddb110099.737ENSG00000167986DDB1100100.000Homo_sapiens
ENSRNOG00000020715Ddb19891.554ENSAPOG00000005036ddb19991.633Acanthochromis_polyacanthus
ENSRNOG00000020715Ddb110099.825ENSAMEG00000016518DDB110099.825Ailuropoda_melanoleuca
ENSRNOG00000020715Ddb18691.939ENSACIG00000020624ddb19991.939Amphilophus_citrinellus
ENSRNOG00000020715Ddb110091.228ENSAOCG00000003066ddb110091.228Amphiprion_ocellaris
ENSRNOG00000020715Ddb110091.316ENSAPEG00000000092ddb110091.316Amphiprion_percula
ENSRNOG00000020715Ddb19491.814ENSATEG00000020571ddb19791.814Anabas_testudineus
ENSRNOG00000020715Ddb19896.444ENSAPLG00000007174DDB19996.444Anas_platyrhynchos
ENSRNOG00000020715Ddb110096.930ENSACAG00000017758DDB110096.930Anolis_carolinensis
ENSRNOG00000020715Ddb110099.737ENSANAG00000021878DDB110099.737Aotus_nancymaae
ENSRNOG00000020715Ddb110091.579ENSACLG00000012401ddb110091.579Astatotilapia_calliptera
ENSRNOG00000020715Ddb110099.649ENSBTAG00000021569DDB19399.649Bos_taurus
ENSRNOG00000020715Ddb110037.126WBGene00010890ddb-110037.040Caenorhabditis_elegans
ENSRNOG00000020715Ddb110099.737ENSCJAG00000019319DDB110099.737Callithrix_jacchus
ENSRNOG00000020715Ddb110099.825ENSCAFG00000016264DDB110099.825Canis_familiaris
ENSRNOG00000020715Ddb19499.535ENSCAFG00020012722DDB19999.535Canis_lupus_dingo
ENSRNOG00000020715Ddb110099.649ENSCHIG00000014969DDB110099.649Capra_hircus
ENSRNOG00000020715Ddb110099.211ENSTSYG00000008027DDB110099.211Carlito_syrichta
ENSRNOG00000020715Ddb19899.196ENSCAPG00000010786DDB110099.196Cavia_aperea
ENSRNOG00000020715Ddb110099.211ENSCPOG00000009956DDB110099.211Cavia_porcellus
ENSRNOG00000020715Ddb110099.737ENSCCAG00000035883DDB110099.737Cebus_capucinus
ENSRNOG00000020715Ddb110097.222ENSCATG00000044495DDB110097.222Cercocebus_atys
ENSRNOG00000020715Ddb110099.298ENSCLAG00000004126DDB110099.298Chinchilla_lanigera
ENSRNOG00000020715Ddb110099.737ENSCSAG00000006392DDB110099.737Chlorocebus_sabaeus
ENSRNOG00000020715Ddb18892.803ENSCHOG00000011377DDB19092.803Choloepus_hoffmanni
ENSRNOG00000020715Ddb110097.632ENSCPBG00000017728DDB110097.632Chrysemys_picta_bellii
ENSRNOG00000020715Ddb110061.979ENSCING00000007437-10061.892Ciona_intestinalis
ENSRNOG00000020715Ddb19460.276ENSCSAVG00000004783-10060.276Ciona_savignyi
ENSRNOG00000020715Ddb110099.737ENSCANG00000019948DDB110099.737Colobus_angolensis_palliatus
ENSRNOG00000020715Ddb110099.912ENSCGRG00001016599Ddb110099.912Cricetulus_griseus_chok1gshd
ENSRNOG00000020715Ddb110099.912ENSCGRG00000013427Ddb110099.912Cricetulus_griseus_crigri
ENSRNOG00000020715Ddb19391.329ENSCSEG00000012499ddb19989.777Cynoglossus_semilaevis
ENSRNOG00000020715Ddb19491.519ENSCVAG00000019531ddb19991.519Cyprinodon_variegatus
ENSRNOG00000020715Ddb110088.529ENSDARG00000074431ddb110088.529Danio_rerio
ENSRNOG00000020715Ddb19499.163ENSDNOG00000014884DDB19799.163Dasypus_novemcinctus
ENSRNOG00000020715Ddb184100.000ENSDORG00000000127Ddb1100100.000Dipodomys_ordii
ENSRNOG00000020715Ddb110061.135FBgn0260962pic10060.927Drosophila_melanogaster
ENSRNOG00000020715Ddb171100.000ENSETEG00000001053-71100.000Echinops_telfairi
ENSRNOG00000020715Ddb17885.039ENSEBUG00000014593ddb19785.039Eptatretus_burgeri
ENSRNOG00000020715Ddb110099.649ENSEASG00005008184DDB110099.649Equus_asinus_asinus
ENSRNOG00000020715Ddb110099.561ENSECAG00000012136DDB110099.561Equus_caballus
ENSRNOG00000020715Ddb18597.475ENSEEUG00000003194DDB18597.475Erinaceus_europaeus
ENSRNOG00000020715Ddb110091.316ENSELUG00000023868ddb110091.316Esox_lucius
ENSRNOG00000020715Ddb110099.825ENSFCAG00000029716DDB110099.825Felis_catus
ENSRNOG00000020715Ddb110096.850ENSFALG00000011981DDB110096.850Ficedula_albicollis
ENSRNOG00000020715Ddb110099.211ENSFDAG00000005128DDB110099.211Fukomys_damarensis
ENSRNOG00000020715Ddb19090.588ENSFHEG00000022133ddb19890.802Fundulus_heteroclitus
ENSRNOG00000020715Ddb17994.649ENSGMOG00000019386ddb19494.649Gadus_morhua
ENSRNOG00000020715Ddb110097.018ENSGALG00000042333DDB110097.018Gallus_gallus
ENSRNOG00000020715Ddb19491.333ENSGAFG00000013142ddb19991.333Gambusia_affinis
ENSRNOG00000020715Ddb19690.742ENSGACG00000017182ddb110090.742Gasterosteus_aculeatus
ENSRNOG00000020715Ddb19597.694ENSGAGG00000014124DDB110097.694Gopherus_agassizii
ENSRNOG00000020715Ddb110099.737ENSGGOG00000004052DDB110099.737Gorilla_gorilla
ENSRNOG00000020715Ddb110091.579ENSHBUG00000008873ddb110091.579Haplochromis_burtoni
ENSRNOG00000020715Ddb110099.123ENSHGLG00000018430DDB110099.123Heterocephalus_glaber_female
ENSRNOG00000020715Ddb110098.070ENSHGLG00100014475DDB110098.070Heterocephalus_glaber_male
ENSRNOG00000020715Ddb19491.078ENSHCOG00000018670ddb19891.078Hippocampus_comes
ENSRNOG00000020715Ddb110090.614ENSIPUG00000005612DDB110090.614Ictalurus_punctatus
ENSRNOG00000020715Ddb110099.737ENSSTOG00000007552DDB110099.737Ictidomys_tridecemlineatus
ENSRNOG00000020715Ddb110099.561ENSJJAG00000017769Ddb110099.561Jaculus_jaculus
ENSRNOG00000020715Ddb19491.426ENSKMAG00000002315ddb19991.426Kryptolebias_marmoratus
ENSRNOG00000020715Ddb18591.606ENSLBEG00000017065ddb19991.606Labrus_bergylta
ENSRNOG00000020715Ddb110093.520ENSLACG00000017611DDB110093.520Latimeria_chalumnae
ENSRNOG00000020715Ddb19283.333ENSLOCG00000000012ddb110083.333Lepisosteus_oculatus
ENSRNOG00000020715Ddb110099.561ENSLAFG00000011513DDB110099.561Loxodonta_africana
ENSRNOG00000020715Ddb110099.737ENSMFAG00000042035DDB110099.737Macaca_fascicularis
ENSRNOG00000020715Ddb19999.735ENSMMUG00000002691DDB19999.735Macaca_mulatta
ENSRNOG00000020715Ddb110099.737ENSMNEG00000031559DDB110099.737Macaca_nemestrina
ENSRNOG00000020715Ddb110099.737ENSMLEG00000044136DDB110099.737Mandrillus_leucophaeus
ENSRNOG00000020715Ddb110091.579ENSMAMG00000014372ddb110091.579Mastacembelus_armatus
ENSRNOG00000020715Ddb110091.491ENSMZEG00005013835ddb110091.491Maylandia_zebra
ENSRNOG00000020715Ddb19496.369ENSMGAG00000004990DDB110096.369Meleagris_gallopavo
ENSRNOG00000020715Ddb110099.912ENSMAUG00000012926Ddb110099.912Mesocricetus_auratus
ENSRNOG00000020715Ddb110099.737ENSMICG00000013703DDB110099.737Microcebus_murinus
ENSRNOG00000020715Ddb110099.649ENSMOCG00000020499Ddb110099.649Microtus_ochrogaster
ENSRNOG00000020715Ddb18691.939ENSMMOG00000001758ddb19991.939Mola_mola
ENSRNOG00000020715Ddb110089.187ENSMODG00000020353DDB110089.187Monodelphis_domestica
ENSRNOG00000020715Ddb110091.579ENSMALG00000014071ddb110091.579Monopterus_albus
ENSRNOG00000020715Ddb110099.825MGP_CAROLIEiJ_G0022695Ddb110099.825Mus_caroli
ENSRNOG00000020715Ddb110099.649ENSMUSG00000024740Ddb110099.649Mus_musculus
ENSRNOG00000020715Ddb110099.825MGP_PahariEiJ_G0014189Ddb110099.825Mus_pahari
ENSRNOG00000020715Ddb110099.737MGP_SPRETEiJ_G0023609Ddb110099.737Mus_spretus
ENSRNOG00000020715Ddb110096.491ENSMPUG00000014200DDB110096.491Mustela_putorius_furo
ENSRNOG00000020715Ddb110099.298ENSMLUG00000013232DDB110099.298Myotis_lucifugus
ENSRNOG00000020715Ddb110099.474ENSNGAG00000009384Ddb110099.474Nannospalax_galili
ENSRNOG00000020715Ddb110091.667ENSNBRG00000019581ddb110091.667Neolamprologus_brichardi
ENSRNOG00000020715Ddb110096.615ENSNLEG00000002022DDB110096.615Nomascus_leucogenys
ENSRNOG00000020715Ddb19199.648ENSMEUG00000001099DDB19399.648Notamacropus_eugenii
ENSRNOG00000020715Ddb19091.077ENSOPRG00000008254DDB19091.077Ochotona_princeps
ENSRNOG00000020715Ddb110099.123ENSODEG00000002419DDB110099.123Octodon_degus
ENSRNOG00000020715Ddb110091.579ENSONIG00000005804ddb110091.579Oreochromis_niloticus
ENSRNOG00000020715Ddb19197.965ENSOANG00000004897DDB110097.965Ornithorhynchus_anatinus
ENSRNOG00000020715Ddb110099.737ENSOCUG00000001667DDB110099.737Oryctolagus_cuniculus
ENSRNOG00000020715Ddb19690.009ENSORLG00000001399ddb19891.258Oryzias_latipes
ENSRNOG00000020715Ddb19689.918ENSORLG00020001277ddb19789.918Oryzias_latipes_hni
ENSRNOG00000020715Ddb19491.070ENSORLG00015002080ddb19991.070Oryzias_latipes_hsok
ENSRNOG00000020715Ddb19689.881ENSOMEG00000006181ddb19989.881Oryzias_melastigma
ENSRNOG00000020715Ddb110099.561ENSOGAG00000016103DDB110099.561Otolemur_garnettii
ENSRNOG00000020715Ddb19999.644ENSOARG00000011716DDB19899.644Ovis_aries
ENSRNOG00000020715Ddb110099.737ENSPPAG00000035343DDB110099.737Pan_paniscus
ENSRNOG00000020715Ddb110099.825ENSPPRG00000013300DDB110099.825Panthera_pardus
ENSRNOG00000020715Ddb19899.821ENSPTIG00000006909DDB19899.821Panthera_tigris_altaica
ENSRNOG00000020715Ddb110099.737ENSPTRG00000003737DDB110099.737Pan_troglodytes
ENSRNOG00000020715Ddb110099.737ENSPANG00000000242DDB110099.737Papio_anubis
ENSRNOG00000020715Ddb19491.426ENSPKIG00000019213ddb19491.426Paramormyrops_kingsleyae
ENSRNOG00000020715Ddb19896.975ENSPSIG00000013275DDB110096.975Pelodiscus_sinensis
ENSRNOG00000020715Ddb18691.633ENSPMGG00000021179ddb19991.633Periophthalmus_magnuspinnatus
ENSRNOG00000020715Ddb110099.912ENSPEMG00000012241Ddb110099.912Peromyscus_maniculatus_bairdii
ENSRNOG00000020715Ddb18986.739ENSPMAG00000008479ddb110086.739Petromyzon_marinus
ENSRNOG00000020715Ddb110099.035ENSPCIG00000002643DDB110099.035Phascolarctos_cinereus
ENSRNOG00000020715Ddb110090.973ENSPFOG00000002768ddb110090.973Poecilia_formosa
ENSRNOG00000020715Ddb110090.789ENSPLAG00000017227ddb110090.789Poecilia_latipinna
ENSRNOG00000020715Ddb110090.789ENSPMEG00000011398ddb110090.789Poecilia_mexicana
ENSRNOG00000020715Ddb19491.442ENSPREG00000004440ddb19891.442Poecilia_reticulata
ENSRNOG00000020715Ddb110094.764ENSPPYG00000003193DDB110094.764Pongo_abelii
ENSRNOG00000020715Ddb18599.403ENSPCAG00000011040DDB18599.403Procavia_capensis
ENSRNOG00000020715Ddb110098.161ENSPCOG00000015176DDB110098.161Propithecus_coquereli
ENSRNOG00000020715Ddb110099.649ENSPVAG00000003847DDB110099.649Pteropus_vampyrus
ENSRNOG00000020715Ddb19491.426ENSPNAG00000006635ddb19791.426Pygocentrus_nattereri
ENSRNOG00000020715Ddb110099.737ENSRBIG00000033611DDB110099.737Rhinopithecus_bieti
ENSRNOG00000020715Ddb110099.737ENSRROG00000041407DDB110099.737Rhinopithecus_roxellana
ENSRNOG00000020715Ddb110099.649ENSSBOG00000019775DDB110099.649Saimiri_boliviensis_boliviensis
ENSRNOG00000020715Ddb19496.916ENSSHAG00000011600DDB110096.916Sarcophilus_harrisii
ENSRNOG00000020715Ddb19491.543ENSSFOG00015011151ddb19791.543Scleropages_formosus
ENSRNOG00000020715Ddb110091.140ENSSMAG00000009495ddb110091.140Scophthalmus_maximus
ENSRNOG00000020715Ddb110091.491ENSSDUG00000004642ddb110091.491Seriola_dumerili
ENSRNOG00000020715Ddb110091.491ENSSLDG00000015804ddb110091.491Seriola_lalandi_dorsalis
ENSRNOG00000020715Ddb170100.000ENSSARG00000003290-72100.000Sorex_araneus
ENSRNOG00000020715Ddb110097.807ENSSPUG00000019338DDB110097.807Sphenodon_punctatus
ENSRNOG00000020715Ddb19491.721ENSSPAG00000009888ddb19991.721Stegastes_partitus
ENSRNOG00000020715Ddb110098.772ENSSSCG00000013094DDB110098.772Sus_scrofa
ENSRNOG00000020715Ddb110097.018ENSTGUG00000006414DDB110097.018Taeniopygia_guttata
ENSRNOG00000020715Ddb19490.401ENSTRUG00000016682ddb19890.401Takifugu_rubripes
ENSRNOG00000020715Ddb18885.130ENSTNIG00000009565ddb19985.130Tetraodon_nigroviridis
ENSRNOG00000020715Ddb19294.648ENSTTRG00000011055DDB19494.648Tursiops_truncatus
ENSRNOG00000020715Ddb19499.535ENSUAMG00000017793DDB19399.535Ursus_americanus
ENSRNOG00000020715Ddb19499.535ENSUMAG00000011788DDB19899.535Ursus_maritimus
ENSRNOG00000020715Ddb190100.000ENSVPAG00000007963DDB192100.000Vicugna_pacos
ENSRNOG00000020715Ddb110099.737ENSVVUG00000004987DDB110099.737Vulpes_vulpes
ENSRNOG00000020715Ddb110093.269ENSXETG00000008820ddb110093.269Xenopus_tropicalis
ENSRNOG00000020715Ddb18691.429ENSXCOG00000013956ddb19991.429Xiphophorus_couchianus
ENSRNOG00000020715Ddb19491.333ENSXMAG00000000022ddb19991.333Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003684damaged DNA binding21873635.IBAFunction
GO:0003684damaged DNA binding-IEAFunction
GO:0003684damaged DNA binding12145536.IMPFunction
GO:0003684damaged DNA binding-ISOFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-IEAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005737cytoplasm-ISSComponent
GO:0006281DNA repair12145536.TASProcess
GO:0006511ubiquitin-dependent protein catabolic process-ISOProcess
GO:0006511ubiquitin-dependent protein catabolic process-ISSProcess
GO:0006974cellular response to DNA damage stimulus-ISOProcess
GO:0010498proteasomal protein catabolic process-ISOProcess
GO:0016055Wnt signaling pathway-IEAProcess
GO:0016055Wnt signaling pathway-ISOProcess
GO:0016567protein ubiquitination-IEAProcess
GO:0016567protein ubiquitination-ISOProcess
GO:0016567protein ubiquitination-ISSProcess
GO:0030674protein binding, bridging-IEAFunction
GO:0030674protein binding, bridging-ISOFunction
GO:0031464Cul4A-RING E3 ubiquitin ligase complex-IEAComponent
GO:0031464Cul4A-RING E3 ubiquitin ligase complex-ISOComponent
GO:0031464Cul4A-RING E3 ubiquitin ligase complex-ISSComponent
GO:0031465Cul4B-RING E3 ubiquitin ligase complex-IEAComponent
GO:0031465Cul4B-RING E3 ubiquitin ligase complex-ISOComponent
GO:0031465Cul4B-RING E3 ubiquitin ligase complex-ISSComponent
GO:0032991protein-containing complex-ISOComponent
GO:0035518histone H2A monoubiquitination-IEAProcess
GO:0035518histone H2A monoubiquitination-ISOProcess
GO:0042752regulation of circadian rhythm-IEAProcess
GO:0042752regulation of circadian rhythm-ISSProcess
GO:0043066negative regulation of apoptotic process-IEAProcess
GO:0043066negative regulation of apoptotic process-ISOProcess
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process21873635.IBAProcess
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process-IEAProcess
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process-ISOProcess
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process-ISSProcess
GO:0044877protein-containing complex binding-IEAFunction
GO:0044877protein-containing complex binding-ISOFunction
GO:0045070positive regulation of viral genome replication-IEAProcess
GO:0045070positive regulation of viral genome replication-ISOProcess
GO:0045722positive regulation of gluconeogenesis-IEAProcess
GO:0045722positive regulation of gluconeogenesis-ISSProcess
GO:0045732positive regulation of protein catabolic process-IEAProcess
GO:0045732positive regulation of protein catabolic process-ISOProcess
GO:0046726positive regulation by virus of viral protein levels in host cell-IEAProcess
GO:0046726positive regulation by virus of viral protein levels in host cell-ISOProcess
GO:0051702interaction with symbiont-IEAProcess
GO:0051702interaction with symbiont-ISOProcess
GO:0070914UV-damage excision repair-IEAProcess
GO:0070914UV-damage excision repair-ISOProcess
GO:0071987WD40-repeat domain binding-IEAFunction
GO:0071987WD40-repeat domain binding-ISOFunction
GO:0080008Cul4-RING E3 ubiquitin ligase complex-ISOComponent
GO:0080008Cul4-RING E3 ubiquitin ligase complex-ISSComponent
GO:0097602cullin family protein binding-IEAFunction
GO:0097602cullin family protein binding-ISOFunction
GO:1901990regulation of mitotic cell cycle phase transition-IEAProcess
GO:1901990regulation of mitotic cell cycle phase transition-ISOProcess
GO:1902188positive regulation of viral release from host cell-IEAProcess
GO:1902188positive regulation of viral release from host cell-ISOProcess

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