EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000020763 (Gene tree)
Gene ID
361574
Gene Symbol
Snrnp70
Alias
LOC361574|Snrp70
Full Name
small nuclear ribonucleoprotein U1 subunit 70
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
20659 bases
Position
chr1:101367471-101388129
Accession
1307120
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000028176RRM_1PF00076.226.1e-1811
ENSRNOP00000043074RRM_1PF00076.221.3e-1311
ENSRNOP00000043074U1snRNP70_NPF12220.87.7e-2911
ENSRNOP00000028176U1snRNP70_NPF12220.81.1e-2711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000028176-1679XM_006229101ENSRNOP00000028176451 (aa)XP_006229163B2RZ74
ENSRNOT00000049957-1413-ENSRNOP00000043074166 (aa)-D3Z8H0
Gene Model
Click here to download ENSRNOG00000020763's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000020763's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000020763Snrnp709975.758ENSEBUG00000003414-8675.758Eptatretus_burgeri
ENSRNOG00000020763Snrnp709997.561ENSHGLG00000006378-10096.491Heterocephalus_glaber_female
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISSProcess
GO:0003723RNA binding-ISOFunction
GO:0003723RNA binding-ISSFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus10022522.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005681spliceosomal complex-ISSComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP16502463.IDAComponent
GO:0005685U1 snRNP-ISOComponent
GO:0005737cytoplasm10022522.IDAComponent
GO:0016607nuclear speck-ISOComponent
GO:0030619U1 snRNA binding-IEAFunction
GO:0030619U1 snRNA binding-ISOFunction
GO:0043484regulation of RNA splicing-ISOProcess
GO:0043484regulation of RNA splicing-ISSProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0071300cellular response to retinoic acid10022522.IEPProcess
GO:0071356cellular response to tumor necrosis factor10022522.IEPProcess
GO:0071560cellular response to transforming growth factor beta stimulus10022522.IEPProcess
GO:1990446U1 snRNP binding16502463.IDAFunction

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