EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000020782 (Gene tree)
Gene ID: 305910
Gene Symbol: Pspc1
Alias: LOC305910|MGC116378
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 80025 bases
Position: chr15:36950257-37030281
Accession: 1310122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000070730	RRM_1	PF00076.22	1.9e-32	1	2
ENSRNOP00000070730	RRM_1	PF00076.22	1.9e-32	2	2
ENSRNOP00000028219	RRM_1	PF00076.22	2.7e-32	1	2
ENSRNOP00000028219	RRM_1	PF00076.22	2.7e-32	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000088037	-	1795	XM_006252065	ENSRNOP00000070730	465 (aa)	XP_006252127	A0A0G2JYN7
ENSRNOT00000075879	-	750	-	-	- (aa)	-	-
ENSRNOT00000028219	-	2031	-	ENSRNOP00000028219	522 (aa)	-	Q4KLH4
ENSRNOT00000075993	-	589	-	-	- (aa)	-	-
ENSRNOT00000076913	-	1081	-	-	- (aa)	-	-
ENSRNOT00000076766	-	627	-	-	- (aa)	-	-

Gene Model

Click here to download ENSRNOG00000020782's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000020782's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000020782	Pspc1	90	57.829	ENSRNOG00000058461	Sfpq	54	66.406
ENSRNOG00000020782	Pspc1	91	58.246	ENSRNOG00000003689	Nono	80	67.717

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000020782	Pspc1	100	97.514	ENSG00000121390	PSPC1	100	97.514	Homo_sapiens
ENSRNOG00000020782	Pspc1	88	75.303	ENSAPOG00000015946	pspc1	81	72.350	Acanthochromis_polyacanthus
ENSRNOG00000020782	Pspc1	100	97.132	ENSAMEG00000017420	PSPC1	100	97.132	Ailuropoda_melanoleuca
ENSRNOG00000020782	Pspc1	88	63.902	ENSACIG00000018695	pspc1	87	59.236	Amphilophus_citrinellus
ENSRNOG00000020782	Pspc1	88	74.818	ENSAOCG00000005279	pspc1	80	71.889	Amphiprion_ocellaris
ENSRNOG00000020782	Pspc1	88	74.818	ENSAPEG00000015927	pspc1	81	71.889	Amphiprion_percula
ENSRNOG00000020782	Pspc1	86	60.345	ENSATEG00000004878	pspc1	96	55.048	Anabas_testudineus
ENSRNOG00000020782	Pspc1	77	93.069	ENSAPLG00000006246	PSPC1	100	93.069	Anas_platyrhynchos
ENSRNOG00000020782	Pspc1	89	60.730	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSRNOG00000020782	Pspc1	98	86.638	ENSACAG00000002093	PSPC1	99	85.143	Anolis_carolinensis
ENSRNOG00000020782	Pspc1	89	52.854	ENSACAG00000013307	-	56	65.027	Anolis_carolinensis
ENSRNOG00000020782	Pspc1	100	97.897	ENSANAG00000000059	PSPC1	100	97.897	Aotus_nancymaae
ENSRNOG00000020782	Pspc1	99	58.071	ENSACLG00000027220	pspc1	100	53.775	Astatotilapia_calliptera
ENSRNOG00000020782	Pspc1	99	68.776	ENSAMXG00000036881	pspc1	88	67.480	Astyanax_mexicanus
ENSRNOG00000020782	Pspc1	100	95.220	ENSBTAG00000003934	PSPC1	100	94.646	Bos_taurus
ENSRNOG00000020782	Pspc1	100	97.706	ENSCJAG00000004554	PSPC1	100	97.706	Callithrix_jacchus
ENSRNOG00000020782	Pspc1	100	97.323	ENSCAFG00020002009	PSPC1	100	97.323	Canis_lupus_dingo
ENSRNOG00000020782	Pspc1	100	95.220	ENSCHIG00000016708	PSPC1	100	94.646	Capra_hircus
ENSRNOG00000020782	Pspc1	80	87.678	ENSTSYG00000032882	PSPC1	93	85.036	Carlito_syrichta
ENSRNOG00000020782	Pspc1	99	96.537	ENSCPOG00000000395	PSPC1	100	94.837	Cavia_porcellus
ENSRNOG00000020782	Pspc1	100	97.706	ENSCCAG00000033498	PSPC1	100	97.706	Cebus_capucinus
ENSRNOG00000020782	Pspc1	100	97.132	ENSCATG00000036434	PSPC1	100	97.132	Cercocebus_atys
ENSRNOG00000020782	Pspc1	88	87.473	ENSCLAG00000005241	PSPC1	99	87.473	Chinchilla_lanigera
ENSRNOG00000020782	Pspc1	100	90.631	ENSCHOG00000008913	PSPC1	100	90.440	Choloepus_hoffmanni
ENSRNOG00000020782	Pspc1	99	86.857	ENSCPBG00000020859	PSPC1	99	85.985	Chrysemys_picta_bellii
ENSRNOG00000020782	Pspc1	66	58.766	ENSCSAVG00000003533	-	57	58.882	Ciona_savignyi
ENSRNOG00000020782	Pspc1	78	84.691	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSRNOG00000020782	Pspc1	100	98.851	ENSCGRG00001018368	Pspc1	100	98.851	Cricetulus_griseus_chok1gshd
ENSRNOG00000020782	Pspc1	100	98.851	ENSCGRG00000011724	Pspc1	100	98.851	Cricetulus_griseus_crigri
ENSRNOG00000020782	Pspc1	85	69.873	ENSCVAG00000007679	-	92	62.986	Cyprinodon_variegatus
ENSRNOG00000020782	Pspc1	99	67.735	ENSDARG00000006621	pspc1	100	68.116	Danio_rerio
ENSRNOG00000020782	Pspc1	100	95.985	ENSDNOG00000011078	PSPC1	100	96.176	Dasypus_novemcinctus
ENSRNOG00000020782	Pspc1	100	94.264	ENSDORG00000016050	Pspc1	100	94.264	Dipodomys_ordii
ENSRNOG00000020782	Pspc1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSRNOG00000020782	Pspc1	86	66.169	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSRNOG00000020782	Pspc1	65	46.341	ENSEBUG00000010133	pspc1	78	48.822	Eptatretus_burgeri
ENSRNOG00000020782	Pspc1	100	96.935	ENSEASG00005000119	PSPC1	100	96.935	Equus_asinus_asinus
ENSRNOG00000020782	Pspc1	100	96.935	ENSECAG00000017286	PSPC1	100	96.935	Equus_caballus
ENSRNOG00000020782	Pspc1	73	95.082	ENSEEUG00000011288	-	88	81.620	Erinaceus_europaeus
ENSRNOG00000020782	Pspc1	99	68.365	ENSELUG00000003746	pspc1	100	66.422	Esox_lucius
ENSRNOG00000020782	Pspc1	100	97.323	ENSFCAG00000027841	PSPC1	100	97.323	Felis_catus
ENSRNOG00000020782	Pspc1	99	87.380	ENSFALG00000008750	PSPC1	99	87.380	Ficedula_albicollis
ENSRNOG00000020782	Pspc1	100	94.253	ENSFDAG00000002617	PSPC1	100	94.253	Fukomys_damarensis
ENSRNOG00000020782	Pspc1	86	70.823	ENSGMOG00000015074	pspc1	92	63.232	Gadus_morhua
ENSRNOG00000020782	Pspc1	99	86.907	ENSGALG00000017142	PSPC1	99	86.441	Gallus_gallus
ENSRNOG00000020782	Pspc1	74	74.785	ENSGAFG00000006327	pspc1	72	74.785	Gambusia_affinis
ENSRNOG00000020782	Pspc1	86	69.479	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSRNOG00000020782	Pspc1	99	85.795	ENSGAGG00000019164	PSPC1	99	85.795	Gopherus_agassizii
ENSRNOG00000020782	Pspc1	92	58.848	ENSGAGG00000017325	-	58	66.580	Gopherus_agassizii
ENSRNOG00000020782	Pspc1	100	97.323	ENSGGOG00000003414	PSPC1	100	97.323	Gorilla_gorilla
ENSRNOG00000020782	Pspc1	99	66.387	ENSHBUG00000001139	pspc1	100	62.894	Haplochromis_burtoni
ENSRNOG00000020782	Pspc1	100	95.793	ENSHGLG00000018811	PSPC1	100	94.837	Heterocephalus_glaber_female
ENSRNOG00000020782	Pspc1	75	92.550	ENSHGLG00100007962	PSPC1	100	92.550	Heterocephalus_glaber_male
ENSRNOG00000020782	Pspc1	90	65.877	ENSHCOG00000013251	pspc1	93	64.762	Hippocampus_comes
ENSRNOG00000020782	Pspc1	98	71.121	ENSIPUG00000013192	pspc1	91	72.727	Ictalurus_punctatus
ENSRNOG00000020782	Pspc1	100	97.514	ENSSTOG00000026833	PSPC1	100	97.514	Ictidomys_tridecemlineatus
ENSRNOG00000020782	Pspc1	100	97.510	ENSJJAG00000018334	Pspc1	100	97.510	Jaculus_jaculus
ENSRNOG00000020782	Pspc1	88	55.292	ENSKMAG00000013525	-	96	50.192	Kryptolebias_marmoratus
ENSRNOG00000020782	Pspc1	88	71.671	ENSLBEG00000004474	pspc1	72	75.510	Labrus_bergylta
ENSRNOG00000020782	Pspc1	99	77.684	ENSLACG00000010762	PSPC1	99	77.444	Latimeria_chalumnae
ENSRNOG00000020782	Pspc1	86	86.500	ENSLOCG00000010832	pspc1	91	84.165	Lepisosteus_oculatus
ENSRNOG00000020782	Pspc1	100	95.977	ENSLAFG00000010968	PSPC1	100	95.977	Loxodonta_africana
ENSRNOG00000020782	Pspc1	100	97.132	ENSMFAG00000032728	PSPC1	100	97.132	Macaca_fascicularis
ENSRNOG00000020782	Pspc1	100	97.132	ENSMMUG00000020262	PSPC1	100	97.132	Macaca_mulatta
ENSRNOG00000020782	Pspc1	100	97.132	ENSMNEG00000027401	PSPC1	100	97.132	Macaca_nemestrina
ENSRNOG00000020782	Pspc1	100	98.496	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSRNOG00000020782	Pspc1	86	72.953	ENSMAMG00000004333	pspc1	87	62.047	Mastacembelus_armatus
ENSRNOG00000020782	Pspc1	99	58.071	ENSMZEG00005005726	pspc1	100	53.775	Maylandia_zebra
ENSRNOG00000020782	Pspc1	78	92.857	ENSMGAG00000015134	PSPC1	100	92.857	Meleagris_gallopavo
ENSRNOG00000020782	Pspc1	99	93.305	ENSMAUG00000021067	Pspc1	99	93.492	Mesocricetus_auratus
ENSRNOG00000020782	Pspc1	100	97.318	ENSMICG00000013970	PSPC1	100	97.318	Microcebus_murinus
ENSRNOG00000020782	Pspc1	100	99.042	ENSMOCG00000006060	Pspc1	100	99.042	Microtus_ochrogaster
ENSRNOG00000020782	Pspc1	93	43.429	ENSMMOG00000004352	pspc1	62	51.453	Mola_mola
ENSRNOG00000020782	Pspc1	99	96.537	ENSMODG00000008029	PSPC1	78	95.876	Monodelphis_domestica
ENSRNOG00000020782	Pspc1	86	72.208	ENSMALG00000008914	pspc1	88	67.597	Monopterus_albus
ENSRNOG00000020782	Pspc1	100	99.044	MGP_CAROLIEiJ_G0019341	Pspc1	100	99.044	Mus_caroli
ENSRNOG00000020782	Pspc1	100	99.235	ENSMUSG00000021938	Pspc1	100	99.235	Mus_musculus
ENSRNOG00000020782	Pspc1	100	99.044	MGP_PahariEiJ_G0030359	Pspc1	100	99.044	Mus_pahari
ENSRNOG00000020782	Pspc1	100	99.044	MGP_SPRETEiJ_G0020232	Pspc1	100	99.044	Mus_spretus
ENSRNOG00000020782	Pspc1	100	97.137	ENSMPUG00000013347	PSPC1	100	97.137	Mustela_putorius_furo
ENSRNOG00000020782	Pspc1	100	95.627	ENSMLUG00000017663	PSPC1	100	95.627	Myotis_lucifugus
ENSRNOG00000020782	Pspc1	100	97.701	ENSNGAG00000011271	Pspc1	100	97.701	Nannospalax_galili
ENSRNOG00000020782	Pspc1	83	64.250	ENSNBRG00000014059	pspc1	92	61.084	Neolamprologus_brichardi
ENSRNOG00000020782	Pspc1	100	97.514	ENSNLEG00000001294	PSPC1	100	97.514	Nomascus_leucogenys
ENSRNOG00000020782	Pspc1	84	95.312	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSRNOG00000020782	Pspc1	99	87.500	ENSODEG00000019012	-	100	84.877	Octodon_degus
ENSRNOG00000020782	Pspc1	100	84.512	ENSODEG00000007817	-	100	81.096	Octodon_degus
ENSRNOG00000020782	Pspc1	99	66.597	ENSONIG00000012010	pspc1	99	62.385	Oreochromis_niloticus
ENSRNOG00000020782	Pspc1	99	66.811	ENSOANG00000011381	-	99	63.740	Ornithorhynchus_anatinus
ENSRNOG00000020782	Pspc1	76	96.992	ENSOANG00000009017	-	100	96.992	Ornithorhynchus_anatinus
ENSRNOG00000020782	Pspc1	100	97.323	ENSOCUG00000006153	PSPC1	100	97.323	Oryctolagus_cuniculus
ENSRNOG00000020782	Pspc1	86	74.065	ENSORLG00000004232	-	90	62.475	Oryzias_latipes
ENSRNOG00000020782	Pspc1	86	71.960	ENSORLG00020000578	PSPC1	90	65.164	Oryzias_latipes_hni
ENSRNOG00000020782	Pspc1	86	74.194	ENSORLG00015017480	pspc1	90	65.574	Oryzias_latipes_hsok
ENSRNOG00000020782	Pspc1	100	97.897	ENSOGAG00000012643	PSPC1	100	97.897	Otolemur_garnettii
ENSRNOG00000020782	Pspc1	100	90.840	ENSOARG00000014163	PSPC1	100	90.840	Ovis_aries
ENSRNOG00000020782	Pspc1	89	92.043	ENSPPAG00000009836	PSPC1	97	96.522	Pan_paniscus
ENSRNOG00000020782	Pspc1	100	97.323	ENSPPRG00000008833	PSPC1	100	97.323	Panthera_pardus
ENSRNOG00000020782	Pspc1	100	82.184	ENSPTIG00000016917	PSPC1	100	82.184	Panthera_tigris_altaica
ENSRNOG00000020782	Pspc1	99	97.619	ENSPTRG00000005677	PSPC1	99	97.531	Pan_troglodytes
ENSRNOG00000020782	Pspc1	100	97.323	ENSPANG00000001992	PSPC1	100	97.323	Papio_anubis
ENSRNOG00000020782	Pspc1	87	79.208	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSRNOG00000020782	Pspc1	99	86.629	ENSPSIG00000005168	PSPC1	99	86.038	Pelodiscus_sinensis
ENSRNOG00000020782	Pspc1	70	68.405	ENSPMGG00000015135	pspc1	89	68.308	Periophthalmus_magnuspinnatus
ENSRNOG00000020782	Pspc1	100	99.425	ENSPEMG00000015214	Pspc1	100	99.425	Peromyscus_maniculatus_bairdii
ENSRNOG00000020782	Pspc1	60	44.755	ENSPMAG00000004618	pspc1	87	44.755	Petromyzon_marinus
ENSRNOG00000020782	Pspc1	99	96.746	ENSPCIG00000017680	PSPC1	100	96.169	Phascolarctos_cinereus
ENSRNOG00000020782	Pspc1	90	70.302	ENSPFOG00000003362	pspc1	93	65.517	Poecilia_formosa
ENSRNOG00000020782	Pspc1	79	64.770	ENSPLAG00000004407	-	51	64.770	Poecilia_latipinna
ENSRNOG00000020782	Pspc1	90	70.302	ENSPLAG00000011540	pspc1	92	65.517	Poecilia_latipinna
ENSRNOG00000020782	Pspc1	90	69.838	ENSPMEG00000008322	pspc1	92	65.112	Poecilia_mexicana
ENSRNOG00000020782	Pspc1	79	64.770	ENSPMEG00000001025	-	53	60.367	Poecilia_mexicana
ENSRNOG00000020782	Pspc1	90	69.606	ENSPREG00000007786	pspc1	92	65.112	Poecilia_reticulata
ENSRNOG00000020782	Pspc1	100	97.318	ENSPPYG00000005186	PSPC1	100	97.318	Pongo_abelii
ENSRNOG00000020782	Pspc1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSRNOG00000020782	Pspc1	100	93.499	ENSPCOG00000014364	PSPC1	100	93.499	Propithecus_coquereli
ENSRNOG00000020782	Pspc1	100	92.912	ENSPVAG00000005036	PSPC1	100	93.295	Pteropus_vampyrus
ENSRNOG00000020782	Pspc1	99	58.071	ENSPNYG00000008893	pspc1	100	53.591	Pundamilia_nyererei
ENSRNOG00000020782	Pspc1	99	70.236	ENSPNAG00000016511	pspc1	100	66.790	Pygocentrus_nattereri
ENSRNOG00000020782	Pspc1	93	97.331	ENSRBIG00000036057	PSPC1	100	97.331	Rhinopithecus_bieti
ENSRNOG00000020782	Pspc1	100	97.323	ENSRROG00000036334	PSPC1	100	97.323	Rhinopithecus_roxellana
ENSRNOG00000020782	Pspc1	79	87.893	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSRNOG00000020782	Pspc1	100	90.857	ENSSHAG00000004696	PSPC1	100	90.857	Sarcophilus_harrisii
ENSRNOG00000020782	Pspc1	86	80.846	ENSSFOG00015001395	pspc1	90	78.372	Scleropages_formosus
ENSRNOG00000020782	Pspc1	86	71.883	ENSSMAG00000001761	pspc1	86	74.571	Scophthalmus_maximus
ENSRNOG00000020782	Pspc1	86	75.931	ENSSDUG00000010651	pspc1	76	74.005	Seriola_dumerili
ENSRNOG00000020782	Pspc1	86	66.667	ENSSLDG00000004284	pspc1	81	61.663	Seriola_lalandi_dorsalis
ENSRNOG00000020782	Pspc1	100	89.080	ENSSARG00000000888	PSPC1	100	89.272	Sorex_araneus
ENSRNOG00000020782	Pspc1	99	74.480	ENSSPUG00000008550	PSPC1	99	75.048	Sphenodon_punctatus
ENSRNOG00000020782	Pspc1	90	53.571	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSRNOG00000020782	Pspc1	88	74.576	ENSSPAG00000001921	pspc1	82	69.690	Stegastes_partitus
ENSRNOG00000020782	Pspc1	100	95.594	ENSSSCG00000009569	PSPC1	100	95.038	Sus_scrofa
ENSRNOG00000020782	Pspc1	89	94.004	ENSTGUG00000011295	PSPC1	100	94.004	Taeniopygia_guttata
ENSRNOG00000020782	Pspc1	86	66.998	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSRNOG00000020782	Pspc1	86	67.494	ENSTNIG00000010358	pspc1	84	66.271	Tetraodon_nigroviridis
ENSRNOG00000020782	Pspc1	99	80.043	ENSTBEG00000002361	PSPC1	100	76.245	Tupaia_belangeri
ENSRNOG00000020782	Pspc1	100	95.977	ENSTTRG00000003343	PSPC1	100	95.977	Tursiops_truncatus
ENSRNOG00000020782	Pspc1	75	97.151	ENSUAMG00000012309	PSPC1	100	97.151	Ursus_americanus
ENSRNOG00000020782	Pspc1	93	97.125	ENSUMAG00000013993	PSPC1	100	97.125	Ursus_maritimus
ENSRNOG00000020782	Pspc1	76	98.246	ENSVPAG00000010029	PSPC1	100	98.246	Vicugna_pacos
ENSRNOG00000020782	Pspc1	100	97.323	ENSVVUG00000006414	PSPC1	100	97.668	Vulpes_vulpes
ENSRNOG00000020782	Pspc1	74	73.926	ENSXCOG00000017438	pspc1	83	73.926	Xiphophorus_couchianus
ENSRNOG00000020782	Pspc1	74	74.212	ENSXMAG00000007929	pspc1	83	74.212	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000976	transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0002218	activation of innate immune response	-	IEA	Process
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0016363	nuclear matrix	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0042382	paraspeckles	-	IEA	Component
GO:0042382	paraspeckles	-	ISO	Component
GO:0042752	regulation of circadian rhythm	-	ISO	Process
GO:0042752	regulation of circadian rhythm	-	ISS	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISS	Process
GO:0048511	rhythmic process	-	IEA	Process
GO:0070888	E-box binding	-	ISO	Function
GO:0070888	E-box binding	-	ISS	Function